Rh6BG272400

Mechanosensitive ion channel protein 10-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
49181440 .. 49182453
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG272400.1

Sequence Viewer

Length: 417 bp
ATGAAGTTCATGACTAAGGAAGAGGTGAAGCTTGTGTGGCCGCTGATTGACGTAGCAAAGACTGGACAAATTGATAAAAATGATTTAACAGATTACGTGGTAAAGGCCTACAAAGATCGCGAAGCATTAGCTTATGCTTTACAAGACACCAAAACAGCTGAAAAGCAATTTGACAGACTTGTGACTGGCATCCTGATTGTTATTACCGTTATAGTGTGGCTTCTGTTGTTGGAAATTGCGAACACCAAAGTACTTGTTTTACTCTCATCACAGATCGTATTAGCAGCTTTTATGTTCGGAAACACATGCAAGAATATATTTGAAGCTATCGTCTTTCTATTTGTAATACATCCGTTTGATGTTGGTGACCGCTGTGTTGTTGATGACGTTCCGGTGACTTGCCTAACTCTTACTTAA

Protein Analysis

138

Amino Acids

15.57

Weight (kDa)

5.08

Isoelectric Point (pI)

21.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 120
AciI CCGC 2 cut(s) 41, 370
AcoI YGGCCR 1 cut(s) 38
AfaI GTAC 1 cut(s) 252
AgsI TTSAA 1 cut(s) 323
AluBI AGCT 5 cut(s) 31, 131, 158, 287, 326
AluI AGCT 5 cut(s) 31, 131, 158, 287, 326
AoxI GGCC 2 cut(s) 38, 105
ApeKI GCWGC 1 cut(s) 284
AsuHPI GGTGA 3 cut(s) 37, 377, 406
BbvI GCAGC 1 cut(s) 296
BisI GCNGC 2 cut(s) 41, 285
BlsI GCNGC 2 cut(s) 42, 286
BmcAI AGTACT 1 cut(s) 252
BmsI GCATC 1 cut(s) 198
BsaAI YACGTR 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 391
Bse1I ACTGG 2 cut(s) 67, 190
BseGI GGATG 2 cut(s) 189, 349
BseNI ACTGG 2 cut(s) 67, 190
BseXI GCAGC 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 2 cut(s) 40, 107
BsiSI CCGG 1 cut(s) 392
BsnI GGCC 2 cut(s) 40, 107
Bsp143I GATC 2 cut(s) 115, 273
Bsp68I TCGCGA 1 cut(s) 120
BspACI CCGC 2 cut(s) 41, 370
BspANI GGCC 2 cut(s) 40, 107
BspFNI CGCG 1 cut(s) 120
BspHI TCATGA 1 cut(s) 9
BsrI ACTGG 2 cut(s) 67, 190
BssMI GATC 2 cut(s) 115, 273
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 15
BstBAI YACGTR 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 15
BstEII GGTNACC 1 cut(s) 365
BstF5I GGATG 2 cut(s) 189, 349
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 2 cut(s) 118, 276
BstMBI GATC 2 cut(s) 115, 273
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 309
BstPI GGTNACC 1 cut(s) 365
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 296
BsuRI GGCC 2 cut(s) 40, 107
BtsCI GGATG 2 cut(s) 189, 349
BtuMI TCGCGA 1 cut(s) 120
CciI TCATGA 1 cut(s) 9
Csp6I GTAC 1 cut(s) 251
CviAII CATG 2 cut(s) 10, 306
CviJI RGCY 8 cut(s) 31, 40, 107, 131, 158, 220, 287, 326
CviKI_1 RGCY 8 cut(s) 31, 40, 107, 131, 158, 220, 287, 326
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 1 cut(s) 15
DpnI GATC 2 cut(s) 117, 275
DpnII GATC 2 cut(s) 115, 273
EaeI YGGCCR 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco147I AGGCCT 1 cut(s) 107
Eco91I GGTNACC 1 cut(s) 365
EcoO65I GGTNACC 1 cut(s) 365
FaeI CATG 2 cut(s) 13, 309
FaiI YATR 6 cut(s) 11, 135, 212, 293, 307, 317
FatI CATG 2 cut(s) 9, 305
Fnu4HI GCNGC 2 cut(s) 41, 285
FokI GGATG 2 cut(s) 176, 336
Fsp4HI GCNGC 2 cut(s) 41, 285
GluI GCNGC 2 cut(s) 41, 285
HaeIII GGCC 2 cut(s) 40, 107
HapII CCGG 1 cut(s) 392
Hin1II CATG 2 cut(s) 13, 309
HindIII AAGCTT 1 cut(s) 29
HpaII CCGG 1 cut(s) 392
HphI GGTGA 3 cut(s) 37, 377, 406
Hpy188I TCNGA 1 cut(s) 299
Hpy188III TCNNGA 3 cut(s) 10, 119, 193
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 3 cut(s) 51, 96, 387
HpyCH4V TGCA 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 3 cut(s) 51, 96, 387
Hsp92II CATG 2 cut(s) 13, 309
Kzo9I GATC 2 cut(s) 115, 273
LpnPI CCDG 4 cut(s) 48, 171, 206, 405
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 1 cut(s) 198
MaeII ACGT 3 cut(s) 51, 96, 387
MaeIII GTNAC 3 cut(s) 181, 365, 394
MalI GATC 2 cut(s) 117, 275
MboI GATC 2 cut(s) 115, 273
MboII GAAGA 1 cut(s) 32
MluCI AATT 3 cut(s) 69, 167, 234
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 1 cut(s) 16
MseI TTAA 2 cut(s) 86, 415
MspA1I CMGCKG 3 cut(s) 43, 158, 372
MspI CCGG 1 cut(s) 392
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeII GATC 2 cut(s) 115, 273
NlaIII CATG 2 cut(s) 13, 309
NmuCI GTSAC 3 cut(s) 181, 365, 394
NruI TCGCGA 1 cut(s) 120
NspI RCATGY 1 cut(s) 309
PagI TCATGA 1 cut(s) 9
PceI AGGCCT 1 cut(s) 107
PkrI GCNGC 2 cut(s) 42, 286
Ppu21I YACGTR 1 cut(s) 97
PspEI GGTNACC 1 cut(s) 365
PvuII CAGCTG 1 cut(s) 158
RruI TCGCGA 1 cut(s) 120
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SaqAI TTAA 2 cut(s) 86, 415
SatI GCNGC 2 cut(s) 41, 285
Sau3AI GATC 2 cut(s) 115, 273
ScaI AGTACT 1 cut(s) 252
SetI ASST 9 cut(s) 27, 33, 54, 99, 133, 160, 289, 328, 390
SfaNI GCATC 1 cut(s) 198
Sse9I AATT 3 cut(s) 69, 167, 234
SseBI AGGCCT 1 cut(s) 107
SsiI CCGC 2 cut(s) 41, 370
StuI AGGCCT 1 cut(s) 107
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 3 cut(s) 54, 99, 390
TasI AATT 3 cut(s) 69, 167, 234
TatI WGTACW 1 cut(s) 250
TauI GCSGC 1 cut(s) 43
Tru1I TTAA 2 cut(s) 86, 415
Tru9I TTAA 2 cut(s) 86, 415
TseFI GTSAC 3 cut(s) 181, 365, 394
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 3 cut(s) 181, 365, 394
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 342
XceI RCATGY 1 cut(s) 309
ZrmI AGTACT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.