Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000828

Physical Location & Seq

Genomic Coordinates Reverse (-)

53410792 .. 53413287

Gene Structure 2496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0389900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCCTATGCTCTCTACTCAGCTCCTTTAAGTTCCTTCAAGGCCACACCAGCACCAGGTATTCATAGCAGTAACCAGAAGCTCAGTCATATAAACTACTTCATAAATAGTTCTCCAGCTGCTAAAGTCTTCCATGTGAAGGCTAAGGCTGCCAAAAGTGATGAAAGCACAAAGCGAAACAGCATGGTTTGTTCTGATTGTGAGGGAAATGGTGCAGTTCTCTGCTCTCAATGCAAAGGCAGTGGAGTAAACTCCGATGATCTGTTTAGTGGACAGTTTAAAGCTGGGGATTCATGCTGGCTTTGCGGTGGCAGAAAGGAGATGTTGTGCGGAAATTGCAATGGAGCCGGCTTTCTTGGAGGTTTCATGAGCACTTCTGATACTACGTCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

131

Amino Acids

13.68

Weight (kDa)

8.12

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSD2_CRD	PF25436	60 - 127	1.6e-37	BSD2 cysteine rich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12080 AT5G12080 AT5G12080 AT5G19520 AT5G19520
fragaria_vesca	FvH4_2g31211 FvH4_2g31220 FvH4_2g31230 FvH4_2g31240
malus_domestica	MD08G1070000.v1.1 MD15G1052100.v1.1
prunus_persica	Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1
pyrus_communis	pycom08g05800 pycom15g04990 pycom16g12570
rosa_chinensis	RchiOBHm_Chr1g0326931 RchiOBHm_Chr1g0326941 RchiOBHm_Chr6g0276141 RchiOBHm_Chr6g0283901 RchiOBHm_Chr6g0311561 RchiOBHm_Chr6g0311571 RchiOBHm_Chr6g0311581 RchiOBHm_Chr6g0311591
rosa_laevigata	RLG00000010389 RLG00000010390 RLG00000010391 RLG00000010393 RLG00000012788 RLG00000030050
rosa_multiflora	Rmu_sc0003315.1_g000003 Rmu_sc0006781.1_g000009 Rmu_sc0007556.1_g000006 Rmu_sc0018059.1_g000002 Rmu_sc0018059.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323490 Rroxscaffold_7G00157470 Rroxscaffold_7G00157480 Rroxscaffold_7G00157490 Rroxscaffold_7G00185080
rosa_rugosa	Rorug01G0062100 Rorug01G0062300 Rorug06G0158200 Rorug06G0158300 Rorug06G0389800.1 Rorug06G0389900
rosa_samantha	Rh1AG079400 Rh1BG063600 Rh1CG077000 Rh1DG083500 Rh6AG504700 Rh6AG504800 Rh6AG504900 Rh6BG272400 Rh6BG515600 Rh6BG515700 Rh6BG515800 Rh6CG521400 Rh6CG521600 Rh6DG266500 Rh6DG507300 Rh6DG507400
rosa_wichuraiana	Rw1G006300 Rw6G018310 Rw6G023400 Rw6G043960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	306, 330
AfiI	CCNNNNNNNGG	2 cut(s)	56, 139
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	4 cut(s)	23, 82, 119, 284
AluI	AGCT	4 cut(s)	23, 82, 119, 284
Alw21I	GWGCWC	1 cut(s)	374
AoxI	GGCC	2 cut(s)	3, 42
ApeKI	GCWGC	2 cut(s)	119, 149
BbsI	GAAGAC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	2 cut(s)	106, 136
BciT130I	CCWGG	1 cut(s)	57
BisI	GCNGC	2 cut(s)	120, 150
BlsI	GCNGC	2 cut(s)	121, 151
Bme1390I	CCNGG	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	121
BpmI	CTGGAG	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 139
Bse118I	RCCGGY	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	56, 139
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	2 cut(s)	33, 97
BseXI	GCAGC	2 cut(s)	106, 136
BseYI	CCCAGC	1 cut(s)	284
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	5, 44
BsiHKAI	GWGCWC	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	56, 139
BsnI	GGCC	2 cut(s)	5, 44
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	2 cut(s)	306, 330
BspANI	GGCC	2 cut(s)	5, 44
BspCNI	CTCAG	2 cut(s)	32, 96
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	346
BsrFI	RCCGGY	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	347
BssMI	GATC	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	276
BstC8I	GCNNGC	2 cut(s)	299, 349
BstDEI	CTNAG	3 cut(s)	19, 83, 144
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 149, 231, 303, 336
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	106, 136
BstV2I	GAAGAC	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	5, 44
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	299, 349
CciI	TCATGA	1 cut(s)	366
Cfr10I	RCCGGY	1 cut(s)	347
CsiI	ACCWGGT	1 cut(s)	55
CspCI	CAANNNNNGTGG	2 cut(s)	223, 258
CviAII	CATG	4 cut(s)	134, 184, 294, 367
DdeI	CTNAG	3 cut(s)	19, 83, 144
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
DraI	TTTAAA	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	55
FaeI	CATG	4 cut(s)	137, 187, 297, 370
FaiI	YATR	9 cut(s)	9, 66, 90, 92, 104, 135, 185, 295, 368
FatI	CATG	4 cut(s)	133, 183, 293, 366
Fnu4HI	GCNGC	2 cut(s)	120, 150
Fsp4HI	GCNGC	2 cut(s)	120, 150
GluI	GCNGC	2 cut(s)	120, 150
GsaI	CCCAGC	1 cut(s)	288
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	5, 44
HapII	CCGG	1 cut(s)	348
Hin1II	CATG	4 cut(s)	137, 187, 297, 370
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	1 cut(s)	348
Hpy166II	GTNNAC	2 cut(s)	250, 272
Hpy188I	TCNGA	4 cut(s)	196, 256, 379, 391
Hpy188III	TCNNGA	1 cut(s)	367
Hpy8I	GTNNAC	2 cut(s)	250, 272
HpyAV	CCTTC	2 cut(s)	46, 133
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	3 cut(s)	215, 234, 339
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 149, 231, 303, 336
HpyF3I	CTNAG	3 cut(s)	19, 83, 144
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	4 cut(s)	137, 187, 297, 370
KroI	GCCGGC	1 cut(s)	347
KroNI	GCCGGC	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	2 cut(s)	28, 344
LpnPI	CCDG	8 cut(s)	42, 63, 69, 89, 129, 270, 283, 361
Lsp1109I	GCAGC	2 cut(s)	106, 136
MabI	ACCWGGT	1 cut(s)	55
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	1 cut(s)	334
MnlI	CCTC	2 cut(s)	196, 353
MroNI	GCCGGC	1 cut(s)	347
MseI	TTAA	2 cut(s)	29, 279
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	5 cut(s)	50, 149, 231, 303, 336
NaeI	GCCGGC	1 cut(s)	349
NdeII	GATC	1 cut(s)	259
NgoMIV	GCCGGC	1 cut(s)	347
NlaIII	CATG	4 cut(s)	137, 187, 297, 370
NlaIV	GGNNCC	1 cut(s)	346
PagI	TCATGA	1 cut(s)	366
PdiI	GCCGGC	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	121, 151
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	29, 279
SatI	GCNGC	2 cut(s)	120, 150
Sau3AI	GATC	1 cut(s)	259
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	7 cut(s)	25, 61, 84, 121, 286, 364, 389
SexAI	ACCWGGT	1 cut(s)	55
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	2 cut(s)	306, 330
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	1 cut(s)	389
TasI	AATT	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	29, 279
Tru9I	TTAA	2 cut(s)	29, 279
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	2 cut(s)	119, 149
TspDTI	ATGAA	5 cut(s)	53, 91, 177, 282, 355
TspRI	CASTG	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.