Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000828

Physical Location & Seq

Genomic Coordinates Forward (+)

45852545 .. 45854470

Gene Structure 1926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G023400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAAGTTCATGACTAAGGAAGAGGTGAAGCTTGTGTGGCCGCTGATTGACGTAGCAAAGACTGGACAAATTGGCAAAAATGATTTAACAGATTACGTGGTAAAGGCCTACAAAGATCGCGAAGCATTAGCTTACGCTTTACAAGACACCAAAACAGCTGAAAAGCAATTTGACAGAATTGTGACTGGCATCCTGATTGTTATTACCGTTATAGTGTGGCTTCTGTTGTTGGAAATTGCGAACACCAAAGTACTTGTTTTACTCTCATCACAGATCGTATTAGCAGCTTTTATGTTCGGAAACACATGCAAGAATATATTTGAAGCTATCGTCTTTGTATTTGTAATACATCCGTTTGATGTTGGTGACCGCTGTGTTGTTGATGACGTTCCGTTGATAGTTGAGGAGATGAACATCTTTACCACAGTCTTCTTGAAGTCTAACAATGAGAAGGTATACTATCCGAATTCAGTTTTATCCACAAAAACCATCAGCAATTATTACAGAAGTTCAGATATGAAAGATACTGTGGAGTTCTCGATTGCTTTGACACCTGTGGAGAAGATAGTCAAGCTCAAAGAGAGAATTAAGGAGTATTTGGAGAGGAACCCTCAGTATTGGCATCCAAAGCATAATGTGGCGGTGATCGATTTCGAAGATGTGAACAAGTTAAAGATGGCAGTGTATTTTCATCACACTATGAACTTTCAAGAATTTGAAGAAAAGAATGTGCGCAGAGCCGAGCTAGTTTTCGAATTGCTGAAAATTCTTGAAGAGCTAAATATCACATACTCTATGCCGCCCCAAGAAGTCCACCTCAAAACTAAATCAGAAGCAATTGCTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

282

Amino Acids

32.67

Weight (kDa)

5.94

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MS_channel_2nd	PF00924	103 - 168	4.2e-10	Mechanosensitive ion channel, beta-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12080 AT5G12080 AT5G12080 AT5G19520 AT5G19520
fragaria_vesca	FvH4_2g31211 FvH4_2g31220 FvH4_2g31230 FvH4_2g31240
malus_domestica	MD08G1070000.v1.1 MD15G1052100.v1.1
prunus_persica	Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1
pyrus_communis	pycom08g05800 pycom15g04990 pycom16g12570
rosa_chinensis	RchiOBHm_Chr1g0326931 RchiOBHm_Chr1g0326941 RchiOBHm_Chr6g0276141 RchiOBHm_Chr6g0283901 RchiOBHm_Chr6g0311561 RchiOBHm_Chr6g0311571 RchiOBHm_Chr6g0311581 RchiOBHm_Chr6g0311591
rosa_laevigata	RLG00000010389 RLG00000010390 RLG00000010391 RLG00000010393 RLG00000012788 RLG00000030050
rosa_multiflora	Rmu_sc0003315.1_g000003 Rmu_sc0006781.1_g000009 Rmu_sc0007556.1_g000006 Rmu_sc0018059.1_g000002 Rmu_sc0018059.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323490 Rroxscaffold_7G00157470 Rroxscaffold_7G00157480 Rroxscaffold_7G00157490 Rroxscaffold_7G00185080
rosa_rugosa	Rorug01G0062100 Rorug01G0062300 Rorug06G0158200 Rorug06G0158300 Rorug06G0389800.1 Rorug06G0389900
rosa_samantha	Rh1AG079400 Rh1BG063600 Rh1CG077000 Rh1DG083500 Rh6AG504700 Rh6AG504800 Rh6AG504900 Rh6BG272400 Rh6BG515600 Rh6BG515700 Rh6BG515800 Rh6CG521400 Rh6CG521600 Rh6DG266500 Rh6DG507300 Rh6DG507400
rosa_wichuraiana	Rw1G006300 Rw6G018310 Rw6G023400 Rw6G043960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	734
AccI	GTMKAC	1 cut(s)	456
AccII	CGCG	1 cut(s)	120
AciI	CCGC	4 cut(s)	41, 370, 641, 800
AcoI	YGGCCR	1 cut(s)	38
AcsI	RAATTY	3 cut(s)	466, 713, 765
AfaI	GTAC	1 cut(s)	252
AgsI	TTSAA	5 cut(s)	323, 436, 710, 719, 773
AluBI	AGCT	8 cut(s)	31, 131, 158, 287, 326, 574, 745, 778
AluI	AGCT	8 cut(s)	31, 131, 158, 287, 326, 574, 745, 778
AoxI	GGCC	2 cut(s)	38, 105
ApeKI	GCWGC	2 cut(s)	284, 842
ApoI	RAATTY	3 cut(s)	466, 713, 765
AspLEI	GCGC	1 cut(s)	735
AsuHPI	GGTGA	3 cut(s)	37, 377, 655
AsuII	TTCGAA	2 cut(s)	654, 753
BbsI	GAAGAC	1 cut(s)	421
BbvI	GCAGC	2 cut(s)	296, 829
BccI	CCATC	2 cut(s)	497, 670
BfaI	CTAG	1 cut(s)	746
BisI	GCNGC	4 cut(s)	41, 285, 800, 843
BlsI	GCNGC	4 cut(s)	42, 286, 801, 844
BmcAI	AGTACT	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	608
BmsI	GCATC	2 cut(s)	198, 631
BpiI	GAAGAC	1 cut(s)	421
BplI	GAGNNNNNCTC	2 cut(s)	595, 627
Bpu14I	TTCGAA	2 cut(s)	654, 753
Bsa29I	ATCGAT	1 cut(s)	648
BsaAI	YACGTR	1 cut(s)	97
BsaBI	GATNNNNATC	1 cut(s)	413
Bse1I	ACTGG	2 cut(s)	67, 190
Bse8I	GATNNNNATC	1 cut(s)	413
BseCI	ATCGAT	1 cut(s)	648
BseGI	GGATG	3 cut(s)	189, 349, 622
BseJI	GATNNNNATC	1 cut(s)	413
BseMII	CTCAG	1 cut(s)	626
BseNI	ACTGG	2 cut(s)	67, 190
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	2 cut(s)	296, 829
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	2 cut(s)	40, 107
BshVI	ATCGAT	1 cut(s)	648
BsnI	GGCC	2 cut(s)	40, 107
Bsp119I	TTCGAA	2 cut(s)	654, 753
Bsp143I	GATC	3 cut(s)	115, 273, 645
Bsp68I	TCGCGA	1 cut(s)	120
BspACI	CCGC	4 cut(s)	41, 370, 641, 800
BspANI	GGCC	2 cut(s)	40, 107
BspCNI	CTCAG	1 cut(s)	625
BspDI	ATCGAT	1 cut(s)	648
BspFNI	CGCG	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	608
BspQI	GCTCTTC	1 cut(s)	768
BspT104I	TTCGAA	2 cut(s)	654, 753
BsrI	ACTGG	2 cut(s)	67, 190
BssMI	GATC	3 cut(s)	115, 273, 645
BssNAI	GTATAC	1 cut(s)	457
Bst1107I	GTATAC	1 cut(s)	457
Bst4CI	ACNGT	3 cut(s)	208, 427, 529
Bst6I	CTCTTC	2 cut(s)	15, 768
BstAPI	GCANNNNNTGC	1 cut(s)	842
BstBAI	YACGTR	1 cut(s)	97
BstBI	TTCGAA	2 cut(s)	654, 753
BstDEI	CTNAG	2 cut(s)	15, 612
BstEII	GGTNACC	1 cut(s)	365
BstF5I	GGATG	3 cut(s)	189, 349, 622
BstFNI	CGCG	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	735
BstKTI	GATC	3 cut(s)	118, 276, 648
BstMBI	GATC	3 cut(s)	115, 273, 645
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 628, 842
BstNSI	RCATGY	1 cut(s)	309
BstPI	GGTNACC	1 cut(s)	365
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	296, 829
BstV2I	GAAGAC	1 cut(s)	421
BstZ17I	GTATAC	1 cut(s)	457
Bsu15I	ATCGAT	1 cut(s)	648
BsuRI	GGCC	2 cut(s)	40, 107
BsuTUI	ATCGAT	1 cut(s)	648
BtsCI	GGATG	3 cut(s)	189, 349, 622
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	1 cut(s)	687
BtuMI	TCGCGA	1 cut(s)	120
CciI	TCATGA	1 cut(s)	9
CfoI	GCGC	1 cut(s)	735
ClaI	ATCGAT	1 cut(s)	648
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	2 cut(s)	10, 306
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	2 cut(s)	15, 612
DpnI	GATC	3 cut(s)	117, 275, 647
DpnII	GATC	3 cut(s)	115, 273, 645
EaeI	YGGCCR	1 cut(s)	38
Eam1104I	CTCTTC	2 cut(s)	15, 768
EarI	CTCTTC	2 cut(s)	15, 768
Eco147I	AGGCCT	1 cut(s)	107
Eco91I	GGTNACC	1 cut(s)	365
EcoO65I	GGTNACC	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	466
FaeI	CATG	2 cut(s)	13, 309
FatI	CATG	2 cut(s)	9, 305
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	4 cut(s)	41, 285, 800, 843
FokI	GGATG	3 cut(s)	176, 336, 609
Fsp4HI	GCNGC	4 cut(s)	41, 285, 800, 843
FspBI	CTAG	1 cut(s)	746
FspI	TGCGCA	1 cut(s)	734
GlaI	GCGC	1 cut(s)	734
GluI	GCNGC	4 cut(s)	41, 285, 800, 843
HaeIII	GGCC	2 cut(s)	40, 107
HhaI	GCGC	1 cut(s)	735
Hin1II	CATG	2 cut(s)	13, 309
Hin6I	GCGC	1 cut(s)	733
HinP1I	GCGC	1 cut(s)	733
HindIII	AAGCTT	1 cut(s)	29
HphI	GGTGA	3 cut(s)	37, 377, 655
Hpy166II	GTNNAC	3 cut(s)	457, 664, 814
Hpy188I	TCNGA	4 cut(s)	299, 465, 514, 832
Hpy188III	TCNNGA	7 cut(s)	10, 119, 193, 433, 538, 710, 770
Hpy8I	GTNNAC	3 cut(s)	457, 664, 814
HpyAV	CCTTC	1 cut(s)	445
HpyCH4III	ACNGT	3 cut(s)	208, 427, 529
HpyCH4IV	ACGT	3 cut(s)	51, 96, 387
HpyCH4V	TGCA	1 cut(s)	309
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 628, 842
HpyF3I	CTNAG	2 cut(s)	15, 612
HpySE526I	ACGT	3 cut(s)	51, 96, 387
Hsp92II	CATG	2 cut(s)	13, 309
HspAI	GCGC	1 cut(s)	733
Kzo9I	GATC	3 cut(s)	115, 273, 645
LguI	GCTCTTC	1 cut(s)	768
LpnPI	CCDG	4 cut(s)	48, 171, 206, 567
Lsp1109I	GCAGC	2 cut(s)	296, 829
LweI	GCATC	2 cut(s)	198, 631
MaeI	CTAG	1 cut(s)	746
MaeII	ACGT	3 cut(s)	51, 96, 387
MaeIII	GTNAC	2 cut(s)	181, 365
MalI	GATC	3 cut(s)	117, 275, 647
MboI	GATC	3 cut(s)	115, 273, 645
MboII	GAAGA	6 cut(s)	32, 421, 574, 668, 731, 785
MfeI	CAATTG	1 cut(s)	837
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	5 cut(s)	16, 397, 597, 621, 827
MseI	TTAA	3 cut(s)	86, 588, 671
MspA1I	CMGCKG	3 cut(s)	43, 158, 372
MunI	CAATTG	1 cut(s)	837
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	3 cut(s)	37, 628, 842
NdeII	GATC	3 cut(s)	115, 273, 645
NlaIII	CATG	2 cut(s)	13, 309
NlaIV	GGNNCC	1 cut(s)	608
NmeAIII	GCCGAG	1 cut(s)	766
NmuCI	GTSAC	2 cut(s)	181, 365
NruI	TCGCGA	1 cut(s)	120
NsbI	TGCGCA	1 cut(s)	734
NspI	RCATGY	1 cut(s)	309
NspV	TTCGAA	2 cut(s)	654, 753
PagI	TCATGA	1 cut(s)	9
PceI	AGGCCT	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	768
PkrI	GCNGC	4 cut(s)	42, 286, 801, 844
Ppu21I	YACGTR	1 cut(s)	97
PspEI	GGTNACC	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	608
PvuII	CAGCTG	1 cut(s)	158
RruI	TCGCGA	1 cut(s)	120
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	768
SaqAI	TTAA	3 cut(s)	86, 588, 671
SatI	GCNGC	4 cut(s)	41, 285, 800, 843
Sau3AI	GATC	3 cut(s)	115, 273, 645
ScaI	AGTACT	1 cut(s)	252
SfaNI	GCATC	2 cut(s)	198, 631
SfuI	TTCGAA	2 cut(s)	654, 753
SseBI	AGGCCT	1 cut(s)	107
SsiI	CCGC	4 cut(s)	41, 370, 641, 800
SspMI	CTAG	1 cut(s)	746
StuI	AGGCCT	1 cut(s)	107
TaaI	ACNGT	3 cut(s)	208, 427, 529
TaiI	ACGT	3 cut(s)	54, 99, 390
TaqI	TCGA	4 cut(s)	539, 648, 654, 753
TatI	WGTACW	1 cut(s)	250
TauI	GCSGC	2 cut(s)	43, 802
Tru1I	TTAA	3 cut(s)	86, 588, 671
Tru9I	TTAA	3 cut(s)	86, 588, 671
TscAI	CASTG	1 cut(s)	687
TseFI	GTSAC	2 cut(s)	181, 365
TseI	GCWGC	2 cut(s)	284, 842
Tsp45I	GTSAC	2 cut(s)	181, 365
TspDTI	ATGAA	5 cut(s)	17, 425, 533, 680, 716
TspGWI	ACGGA	2 cut(s)	342, 381
TspRI	CASTG	1 cut(s)	687
XapI	RAATTY	3 cut(s)	466, 713, 765
XceI	RCATGY	1 cut(s)	309
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	1 cut(s)	746
ZrmI	AGTACT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.