Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000828

Physical Location & Seq

Genomic Coordinates Forward (+)

67697700 .. 67698914

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG521400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGAAGCCGCAGAGAAAGGCTTAAAAGGAAGTAGAGTAAGAATGTCGAAAAATCGATCTGGGAATGATGGAGGTGATGAAGTTGTAGTGGTGGTTCAAAGCGAAGAGATGGAAGATGAAGCAAAAGGGTCTTGTTCGAAAGGGTTAGAATCTTCAGCTCCCAATCAAATTAGCAAAGTGGAATTGCAGGTTGGCTCTCATTCCCCTGAGATTACAGGATCCAGCAACGCCCCCATCCCCAATGAGACCCTCACTAGGAGAAAGTCATCTATTAGTCTTGGTCAACAGTCGATGCGCATTGATTCTGATATTCTTGAAGAGGACACTAATTTAGAGCAGGATGGTTCCCCCGCAAATAAATCAGCATATAAAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGATTTACGAGAAGGTTAACTCTAGCAGGAAAGTGAACAAGAAAATGCTGATGGAGTATATTGTTTTCGCATGCAGTTTGGGCGTTATAGTAGCTAGTTTTACCGTCGAGAAACTAGAGAATCTTAAGGTGTGGGGATTGGAGATGTGGAAATGGTGTGTGCTTGTTATGCTCATATTCTGTGGAATGCTGGTTACGAATTGTGTTTTGACTCTGTTAGTTTTTGTGATTGAGAGGAACTTTCTGCTTACGAGGAAGAAGGAGGTGTTGTATTTGGTTTATGGAATGAAAAAGAGTGTTCAGGTTTTCCTGTGGTTCGGTATGGTGCTTCTCACATGGCTAGTGTTTTTCAAATTCAATCGTGGCAATGAGAGATCAAAGACTTCCACCAAGATTTTGGATCATATTACGTGGACTCTTGTTTCGCTGCTTATTGGTGCCTTTTTGTGGATGTTATCAACTTTGTTGTTTAAGACCTTAGCATCTAAATTCATGGCCGTCGCCTATTTTGATAGGATTCAAGAATCTTTGTTCCATCAGTACGTTATTGAGACACTTTTGGGGCCTCCGTTAGTAGAGGAGGATGCCAAGATTAGGAGATCACCCAGCACAGGGTTTGCGAGTCTCAGGAGGATAAACAATGTGGAAAAGAAGGTCACTGGTAAGGTGAATCCTGCAAGGAAGGTTTCAGTTGAGACCATGGATACGTTGGTGGGTGCAGTTTCTAGTAAAGATACAGAGATTAGAAGTGAGTGGGAAGCCAAAGCTGCTGCCTTCAAAATATTTCGAAACGTTGCTAAGCATGGTAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0080167 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

404

Amino Acids

45.57

Weight (kDa)

8.11

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Msy1	PF25886	153 - 297	5e-07	Mechanosensitive ion channel protein Msy1-like, transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12080 AT5G12080 AT5G12080 AT5G19520 AT5G19520
fragaria_vesca	FvH4_2g31211 FvH4_2g31220 FvH4_2g31230 FvH4_2g31240
malus_domestica	MD08G1070000.v1.1 MD15G1052100.v1.1
prunus_persica	Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1
pyrus_communis	pycom08g05800 pycom15g04990 pycom16g12570
rosa_chinensis	RchiOBHm_Chr1g0326931 RchiOBHm_Chr1g0326941 RchiOBHm_Chr6g0276141 RchiOBHm_Chr6g0283901 RchiOBHm_Chr6g0311561 RchiOBHm_Chr6g0311571 RchiOBHm_Chr6g0311581 RchiOBHm_Chr6g0311591
rosa_laevigata	RLG00000010389 RLG00000010390 RLG00000010391 RLG00000010393 RLG00000012788 RLG00000030050
rosa_multiflora	Rmu_sc0003315.1_g000003 Rmu_sc0006781.1_g000009 Rmu_sc0007556.1_g000006 Rmu_sc0018059.1_g000002 Rmu_sc0018059.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323490 Rroxscaffold_7G00157470 Rroxscaffold_7G00157480 Rroxscaffold_7G00157490 Rroxscaffold_7G00185080
rosa_rugosa	Rorug01G0062100 Rorug01G0062300 Rorug06G0158200 Rorug06G0158300 Rorug06G0389800.1 Rorug06G0389900
rosa_samantha	Rh1AG079400 Rh1BG063600 Rh1CG077000 Rh1DG083500 Rh6AG504700 Rh6AG504800 Rh6AG504900 Rh6BG272400 Rh6BG515600 Rh6BG515700 Rh6BG515800 Rh6CG521400 Rh6CG521600 Rh6DG266500 Rh6DG507300 Rh6DG507400
rosa_wichuraiana	Rw1G006300 Rw6G018310 Rw6G023400 Rw6G043960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	836
AciI	CCGC	2 cut(s)	9, 351
AclI	AACGTT	1 cut(s)	1191
AclWI	GGATC	3 cut(s)	213, 226, 807
AcoI	YGGCCR	1 cut(s)	894
AcsI	RAATTY	2 cut(s)	752, 887
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	1 cut(s)	941
AfiI	CCNNNNNNNGG	5 cut(s)	255, 846, 993, 1010, 1011
AflII	CTTAAG	1 cut(s)	524
AgsI	TTSAA	6 cut(s)	98, 317, 751, 757, 920, 1177
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	3 cut(s)	158, 494, 1166
AluI	AGCT	3 cut(s)	158, 494, 1166
Alw26I	GTCTC	4 cut(s)	239, 944, 1028, 1088
AlwI	GGATC	3 cut(s)	213, 226, 807
AoxI	GGCC	2 cut(s)	894, 962
ApeKI	GCWGC	3 cut(s)	826, 1166, 1169
ApoI	RAATTY	2 cut(s)	752, 887
ArsI	GACNNNNNNTTYG	2 cut(s)	805, 837
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	962
AsuHPI	GGTGA	3 cut(s)	86, 993, 1078
AsuII	TTCGAA	2 cut(s)	137, 1186
BaeI	ACNNNNGTAYC	2 cut(s)	1095, 1128
BamHI	GGATCC	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	836
BbvI	GCAGC	3 cut(s)	813, 1153, 1156
BccI	CCATC	6 cut(s)	62, 103, 242, 335, 445, 942
BceAI	ACGGC	1 cut(s)	881
BciVI	GTATCC	1 cut(s)	1096
BcoDI	GTCTC	4 cut(s)	239, 944, 1028, 1088
BfaI	CTAG	6 cut(s)	255, 423, 495, 515, 740, 1125
BfrI	CTTAAG	1 cut(s)	524
BfuAI	ACCTGC	1 cut(s)	178
BfuI	GTATCC	1 cut(s)	1096
BisI	GCNGC	4 cut(s)	9, 827, 1167, 1170
BlpI	GCTNAGC	1 cut(s)	1197
BlsI	GCNGC	4 cut(s)	10, 828, 1168, 1171
BmgT120I	GGNCC	1 cut(s)	962
BmiI	GGNNCC	4 cut(s)	220, 346, 838, 963
BmsI	GCATC	3 cut(s)	282, 890, 973
Bpu10I	CCTNAGC	1 cut(s)	877
Bpu1102I	GCTNAGC	1 cut(s)	1197
Bpu14I	TTCGAA	2 cut(s)	137, 1186
Bsa29I	ATCGAT	1 cut(s)	55
BsaAI	YACGTR	1 cut(s)	810
BsaI	GGTCTC	2 cut(s)	239, 1088
BsaJI	CCNNGG	1 cut(s)	1098
BsaXI	ACNNNNNCTCC	2 cut(s)	653, 683
Bsc4I	CCNNNNNNNGG	5 cut(s)	255, 846, 993, 1010, 1011
Bse1I	ACTGG	1 cut(s)	1063
Bse3DI	GCAATG	1 cut(s)	772
BseCI	ATCGAT	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	1098
BseGI	GGATG	4 cut(s)	234, 346, 855, 988
BseLI	CCNNNNNNNGG	5 cut(s)	255, 846, 993, 1010, 1011
BseMI	GCAATG	1 cut(s)	772
BseMII	CTCAG	2 cut(s)	198, 1039
BseNI	ACTGG	1 cut(s)	1063
BseRI	GAGGAG	9 cut(s)	392, 395, 398, 401, 404, 407, 410, 413, 992
BseXI	GCAGC	3 cut(s)	813, 1153, 1156
BseYI	CCCAGC	1 cut(s)	1004
BsgI	GTGCAG	1 cut(s)	1137
BshFI	GGCC	2 cut(s)	896, 964
BshNI	GGYRCC	1 cut(s)	836
BshVI	ATCGAT	1 cut(s)	55
BslI	CCNNNNNNNGG	5 cut(s)	255, 846, 993, 1010, 1011
BsmAI	GTCTC	4 cut(s)	239, 944, 1028, 1088
BsmI	GAATGC	1 cut(s)	591
BsnI	GGCC	2 cut(s)	896, 964
Bso31I	GGTCTC	2 cut(s)	239, 1088
Bsp119I	TTCGAA	2 cut(s)	137, 1186
Bsp143I	GATC	5 cut(s)	56, 218, 773, 799, 998
Bsp1720I	GCTNAGC	1 cut(s)	1197
Bsp19I	CCATGG	1 cut(s)	1098
BspACI	CCGC	2 cut(s)	9, 351
BspANI	GGCC	2 cut(s)	896, 964
BspCNI	CTCAG	2 cut(s)	199, 1038
BspDI	ATCGAT	1 cut(s)	55
BspLI	GGNNCC	4 cut(s)	220, 346, 838, 963
BspMI	ACCTGC	1 cut(s)	178
BspPI	GGATC	3 cut(s)	213, 226, 807
BspT104I	TTCGAA	2 cut(s)	137, 1186
BspT107I	GGYRCC	1 cut(s)	836
BspTI	CTTAAG	1 cut(s)	524
BspTNI	GGTCTC	2 cut(s)	239, 1088
BsrDI	GCAATG	1 cut(s)	772
BsrI	ACTGG	1 cut(s)	1063
BssECI	CCNNGG	1 cut(s)	1098
BssMI	GATC	5 cut(s)	56, 218, 773, 799, 998
BssT1I	CCWWGG	1 cut(s)	1098
Bst4CI	ACNGT	2 cut(s)	288, 505
Bst6I	CTCTTC	2 cut(s)	99, 312
BstAFI	CTTAAG	1 cut(s)	524
BstBAI	YACGTR	1 cut(s)	810
BstBI	TTCGAA	2 cut(s)	137, 1186
BstC8I	GCNNGC	1 cut(s)	472
BstDEI	CTNAG	4 cut(s)	207, 877, 1025, 1197
BstDSI	CCRYGG	1 cut(s)	1098
BstF5I	GGATG	4 cut(s)	234, 346, 855, 988
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	5 cut(s)	59, 221, 776, 802, 1001
BstMAI	GTCTC	4 cut(s)	239, 944, 1028, 1088
BstMBI	GATC	5 cut(s)	56, 218, 773, 799, 998
BstMWI	GCNNNNNNNGC	3 cut(s)	480, 568, 1166
BstNSI	RCATGY	1 cut(s)	474
BstV1I	GCAGC	3 cut(s)	813, 1153, 1156
BstX2I	RGATCY	1 cut(s)	218
BstXI	CCANNNNNNTGG	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	218
Bsu15I	ATCGAT	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	1096
BsuRI	GGCC	2 cut(s)	896, 964
BsuTUI	ATCGAT	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	1098
BtsCI	GGATG	4 cut(s)	234, 346, 855, 988
BtsIMutI	CAGTG	1 cut(s)	1056
BveI	ACCTGC	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	472
CfoI	GCGC	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	962
ClaI	ATCGAT	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	940
CviAII	CATG	5 cut(s)	471, 735, 892, 1099, 1202
CviQI	GTAC	1 cut(s)	940
DdeI	CTNAG	4 cut(s)	207, 877, 1025, 1197
DpnI	GATC	5 cut(s)	58, 220, 775, 801, 1000
DpnII	GATC	5 cut(s)	56, 218, 773, 799, 998
EaeI	YGGCCR	1 cut(s)	894
Eam1104I	CTCTTC	2 cut(s)	99, 312
EarI	CTCTTC	2 cut(s)	99, 312
Eco130I	CCWWGG	1 cut(s)	1098
Eco31I	GGTCTC	2 cut(s)	239, 1088
Eco57I	CTGAAG	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	962
EcoT14I	CCWWGG	1 cut(s)	1098
ErhI	CCWWGG	1 cut(s)	1098
FaeI	CATG	5 cut(s)	474, 738, 895, 1102, 1205
FatI	CATG	5 cut(s)	470, 734, 891, 1098, 1201
FauI	CCCGC	1 cut(s)	358
Fnu4HI	GCNGC	4 cut(s)	9, 827, 1167, 1170
FokI	GGATG	4 cut(s)	221, 353, 862, 995
Fsp4HI	GCNGC	4 cut(s)	9, 827, 1167, 1170
FspAI	RTGCGCAY	1 cut(s)	296
FspBI	CTAG	6 cut(s)	255, 423, 495, 515, 740, 1125
FspI	TGCGCA	1 cut(s)	296
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	4 cut(s)	9, 827, 1167, 1170
GsaI	CCCAGC	1 cut(s)	1008
HaeIII	GGCC	2 cut(s)	896, 964
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	5 cut(s)	474, 738, 895, 1102, 1205
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	2 cut(s)	284, 418
HindII	GTYRAC	2 cut(s)	284, 418
HinfI	GANTC	9 cut(s)	149, 302, 520, 610, 814, 916, 923, 1021, 1069
HpaI	GTTAAC	1 cut(s)	418
HphI	GGTGA	3 cut(s)	86, 993, 1078
Hpy166II	GTNNAC	4 cut(s)	284, 418, 436, 813
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	4 cut(s)	314, 508, 920, 1027
Hpy8I	GTNNAC	4 cut(s)	284, 418, 436, 813
Hpy99I	CGWCG	2 cut(s)	509, 902
HpyAV	CCTTC	5 cut(s)	406, 652, 1045, 1075, 1183
HpyCH4III	ACNGT	2 cut(s)	288, 505
HpyCH4IV	ACGT	4 cut(s)	809, 942, 1106, 1191
HpyCH4V	TGCA	4 cut(s)	187, 474, 1076, 1118
HpyF10VI	GCNNNNNNNGC	3 cut(s)	480, 568, 1166
HpyF3I	CTNAG	4 cut(s)	207, 877, 1025, 1197
HpySE526I	ACGT	4 cut(s)	809, 942, 1106, 1191
Hsp92II	CATG	5 cut(s)	474, 738, 895, 1102, 1205
HspAI	GCGC	1 cut(s)	295
KspAI	GTTAAC	1 cut(s)	418
Kzo9I	GATC	5 cut(s)	56, 218, 773, 799, 998
LmnI	GCTCC	1 cut(s)	163
Lsp1109I	GCAGC	3 cut(s)	813, 1153, 1156
LweI	GCATC	3 cut(s)	282, 890, 973
MaeI	CTAG	6 cut(s)	255, 423, 495, 515, 740, 1125
MaeII	ACGT	4 cut(s)	809, 942, 1106, 1191
MaeIII	GTNAC	3 cut(s)	592, 1054, 1205
MalI	GATC	5 cut(s)	58, 220, 775, 801, 1000
MboI	GATC	5 cut(s)	56, 218, 773, 799, 998
MboII	GAAGA	5 cut(s)	116, 125, 144, 329, 667
MflI	RGATCY	1 cut(s)	218
MluCI	AATT	6 cut(s)	168, 182, 328, 598, 752, 887
MlyI	GAGTC	3 cut(s)	604, 808, 1030
MseI	TTAA	4 cut(s)	23, 417, 525, 870
MspCI	CTTAAG	1 cut(s)	524
Mva1269I	GAATGC	1 cut(s)	591
MwoI	GCNNNNNNNGC	3 cut(s)	480, 568, 1166
NcoI	CCATGG	1 cut(s)	1098
NdeII	GATC	5 cut(s)	56, 218, 773, 799, 998
NlaIII	CATG	5 cut(s)	474, 738, 895, 1102, 1205
NlaIV	GGNNCC	4 cut(s)	220, 346, 838, 963
NmuCI	GTSAC	1 cut(s)	1054
NsbI	TGCGCA	1 cut(s)	296
NspI	RCATGY	1 cut(s)	474
NspV	TTCGAA	2 cut(s)	137, 1186
PaeI	GCATGC	1 cut(s)	474
PctI	GAATGC	1 cut(s)	591
PfeI	GAWTC	6 cut(s)	149, 302, 520, 916, 923, 1069
PkrI	GCNGC	4 cut(s)	10, 828, 1168, 1171
PleI	GAGTC	3 cut(s)	604, 808, 1029
PpsI	GAGTC	3 cut(s)	604, 808, 1029
Ppu21I	YACGTR	1 cut(s)	810
Psp1406I	AACGTT	1 cut(s)	1191
PspFI	CCCAGC	1 cut(s)	1004
PspN4I	GGNNCC	4 cut(s)	220, 346, 838, 963
PspPI	GGNCC	1 cut(s)	962
PsrI	GAACNNNNNNTAC	2 cut(s)	78, 110
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	1 cut(s)	941
RsaNI	GTAC	1 cut(s)	940
SaqAI	TTAA	4 cut(s)	23, 417, 525, 870
SatI	GCNGC	4 cut(s)	9, 827, 1167, 1170
Sau3AI	GATC	5 cut(s)	56, 218, 773, 799, 998
Sau96I	GGNCC	1 cut(s)	962
SchI	GAGTC	3 cut(s)	604, 808, 1030
SfaNI	GCATC	3 cut(s)	282, 890, 973
SfuI	TTCGAA	2 cut(s)	137, 1186
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SphI	GCATGC	1 cut(s)	474
Sse9I	AATT	6 cut(s)	168, 182, 328, 598, 752, 887
SsiI	CCGC	2 cut(s)	9, 351
SspI	AATATT	1 cut(s)	1182
SspMI	CTAG	6 cut(s)	255, 423, 495, 515, 740, 1125
StyI	CCWWGG	1 cut(s)	1098
TaaI	ACNGT	2 cut(s)	288, 505
TaiI	ACGT	4 cut(s)	812, 945, 1109, 1194
TaqI	TCGA	6 cut(s)	47, 55, 137, 290, 507, 1186
TasI	AATT	6 cut(s)	168, 182, 328, 598, 752, 887
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	6 cut(s)	149, 302, 520, 916, 923, 1069
Tru1I	TTAA	4 cut(s)	23, 417, 525, 870
Tru9I	TTAA	4 cut(s)	23, 417, 525, 870
TscAI	CASTG	1 cut(s)	1063
TseFI	GTSAC	1 cut(s)	1054
TseI	GCWGC	3 cut(s)	826, 1166, 1169
Tsp45I	GTSAC	1 cut(s)	1054
TspDTI	ATGAA	4 cut(s)	93, 132, 701, 880
TspGWI	ACGGA	1 cut(s)	957
TspRI	CASTG	1 cut(s)	1063
Vha464I	CTTAAG	1 cut(s)	524
XapI	RAATTY	2 cut(s)	752, 887
XceI	RCATGY	1 cut(s)	474
XcmI	CCANNNNNNNNNTGG	2 cut(s)	793, 1105
XspI	CTAG	6 cut(s)	255, 423, 495, 515, 740, 1125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.