RchiOBHm_Chr6g0311591

Mechanosensitive ion channel protein 10-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
68461268 .. 68461796
529 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28024

Sequence Viewer

Length: 474 bp
ATGGTTTGGGAATTGGAGATTTGGAAATGGTGTGTGCTTGTCATGGTGATATTTAGTGGTATGTTGGTTACCAATTGGAGTTTTTGTGATCGAGTTGTTCAGGTTTTCTTGTGGTTGTCTCTGGTTCTTCTCACATGGTTACTGTTGTTCAATCATGGGGTTAAGCGGTCAAAAACTTCCACCAAGATTTTAAGTTATATGACATGGACTATTGTTTCAGTTCTCATTGGGGCATTTTTATGGTTGTTAAAAACATTGTTGCTTAAGATCTTAGCATCTAGTTTCCATGTGAACACCTTATTTGATAGAATTCAAGAATCAATCTTCCATCAGTACGTGCTTCAGAAACTTTCCGGGCATCCACTTATGGAGGAGGGTGATGGGAATGGTGGGAGATCTCCGAGGACTAGCAAACTGAGTTACAGAGCGACCAAAAAGGCAAAAGCAGGGAAGGAGAAGAGGTCATTGACATGA

Protein Analysis

157

Amino Acids

18.15

Weight (kDa)

10.01

Isoelectric Point (pI)

30.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 166
AcsI RAATTY 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 326
AfaI GTAC 1 cut(s) 335
AflII CTTAAG 1 cut(s) 263
AgsI TTSAA 2 cut(s) 151, 314
Alw26I GTCTC 1 cut(s) 123
ApoI RAATTY 1 cut(s) 309
AsuC2I CCSGG 1 cut(s) 355
AsuHPI GGTGA 2 cut(s) 58, 389
BccI CCATC 2 cut(s) 336, 374
BcnI CCSGG 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 2 cut(s) 279, 408
BfrI CTTAAG 1 cut(s) 263
BglII AGATCT 2 cut(s) 267, 395
Bme1390I CCNGG 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 355
BmsI GCATC 2 cut(s) 284, 367
BpuMI CCSGG 1 cut(s) 355
BsaAI YACGTR 1 cut(s) 337
BsaJI CCNNGG 1 cut(s) 401
BsaXI ACNNNNNCTCC 3 cut(s) 70, 100, 446
BseDI CCNNGG 1 cut(s) 401
BseGI GGATG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 407
BseRI GAGGAG 1 cut(s) 386
BsiSI CCGG 1 cut(s) 354
BsmAI GTCTC 1 cut(s) 123
Bsp143I GATC 3 cut(s) 88, 267, 395
BspACI CCGC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 408
BspTI CTTAAG 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 401
BssMI GATC 3 cut(s) 88, 267, 395
Bst4CI ACNGT 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 452
BstAFI CTTAAG 1 cut(s) 263
BstBAI YACGTR 1 cut(s) 337
BstDEI CTNAG 2 cut(s) 271, 416
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 3 cut(s) 91, 270, 398
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 3 cut(s) 88, 267, 395
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 353
BstX2I RGATCY 2 cut(s) 267, 395
BstYI RGATCY 2 cut(s) 267, 395
BtsCI GGATG 1 cut(s) 358
Csp6I GTAC 1 cut(s) 334
CviAII CATG 6 cut(s) 43, 135, 155, 204, 287, 471
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 2 cut(s) 271, 416
DpnI GATC 3 cut(s) 90, 269, 397
DpnII GATC 3 cut(s) 88, 267, 395
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
Eco57I CTGAAG 1 cut(s) 326
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 309
FaeI CATG 6 cut(s) 46, 138, 158, 207, 290, 474
FatI CATG 6 cut(s) 42, 134, 154, 203, 286, 470
FokI GGATG 1 cut(s) 345
FspBI CTAG 2 cut(s) 279, 408
HapII CCGG 1 cut(s) 354
Hin1II CATG 6 cut(s) 46, 138, 158, 207, 290, 474
HinfI GANTC 1 cut(s) 317
HpaII CCGG 1 cut(s) 354
HphI GGTGA 2 cut(s) 58, 389
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 2 cut(s) 345, 402
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 1 cut(s) 144
HpyCH4IV ACGT 1 cut(s) 336
HpyF3I CTNAG 2 cut(s) 271, 416
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 6 cut(s) 46, 138, 158, 207, 290, 474
Kzo9I GATC 3 cut(s) 88, 267, 395
LpnPI CCDG 4 cut(s) 86, 107, 367, 432
LweI GCATC 2 cut(s) 284, 367
MaeI CTAG 2 cut(s) 279, 408
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 3 cut(s) 67, 138, 419
MalI GATC 3 cut(s) 90, 269, 397
MboI GATC 3 cut(s) 88, 267, 395
MboII GAAGA 3 cut(s) 119, 316, 469
MfeI CAATTG 1 cut(s) 73
MflI RGATCY 2 cut(s) 267, 395
MluCI AATT 3 cut(s) 11, 73, 309
MnlI CCTC 4 cut(s) 364, 367, 396, 453
MseI TTAA 4 cut(s) 162, 191, 248, 264
MslI CAYNNNNRTG 2 cut(s) 238, 469
MspCI CTTAAG 1 cut(s) 263
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 355
MunI CAATTG 1 cut(s) 73
NciI CCSGG 1 cut(s) 355
NdeII GATC 3 cut(s) 88, 267, 395
NlaIII CATG 6 cut(s) 46, 138, 158, 207, 290, 474
PfeI GAWTC 1 cut(s) 317
Ppu21I YACGTR 1 cut(s) 337
PspEI GGTNACC 1 cut(s) 67
PsuI RGATCY 2 cut(s) 267, 395
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 2 cut(s) 238, 469
SaqAI TTAA 4 cut(s) 162, 191, 248, 264
Sau3AI GATC 3 cut(s) 88, 267, 395
ScrFI CCNGG 1 cut(s) 355
SetI ASST 4 cut(s) 105, 299, 339, 464
SfaNI GCATC 2 cut(s) 284, 367
SmiMI CAYNNNNRTG 2 cut(s) 238, 469
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 3 cut(s) 11, 73, 309
SsiI CCGC 1 cut(s) 166
SspMI CTAG 2 cut(s) 279, 408
StyD4I CCNGG 1 cut(s) 353
TaaI ACNGT 1 cut(s) 144
TaiI ACGT 1 cut(s) 339
TaqI TCGA 1 cut(s) 91
TasI AATT 3 cut(s) 11, 73, 309
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 4 cut(s) 162, 191, 248, 264
Tru9I TTAA 4 cut(s) 162, 191, 248, 264
Vha464I CTTAAG 1 cut(s) 263
XapI RAATTY 1 cut(s) 309
XspI CTAG 2 cut(s) 279, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.