Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000828

Physical Location & Seq

Genomic Coordinates Reverse (-)

1330106 .. 1331368

Gene Structure 1263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00157490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGTCGGAGAAGCAGCAATCTCCTAATGGAGGTGAAGTTGTAGTGGAAGTTGGAAGGGAAAAGAGCAATGAACTAAAGGGCTCAGACTCTTCAGCTAGCCAGACCCTCACTAAGAGAAGGTCATTCAGTAGGTCAGTCCTCTCCAAACCCAAGTCGAGATTCGGTGATCCATTGCCCTTTGTGTATGAAGAGACTAGTTTGGATCAGGCAGCTGTTGCAAATTCCCTCAATGCTTCTTCATTCAATAGGGAGTCCCCGAATGAAATCTCATTGGATAGGACTGAATCGCGATCCTCCTCTGCGAAAAATGCCCCGCCGTCTCCAGGCAGAACACAAGTTGAGGAGGTTGAAGAGGTTTACAAGACGGCTAATGCGAAGAATGCACCGCCGTTTCCAGGTAGAACAGAAGATGAGGAGGATGAAGACTTTTACAAGCCGGCATATAAGCGTAGAAGAGTGAGAAAGAAGATCTCGATTGAGTGGATTATTTTTCTATCCATTTTGGGTTTTTTAGTGGCTAGCTTGACTGTCCATAAGCTAAAGAATCTTATGGTTTGGGGATTGGAGGTTTGGAAATGGTGTGCGCTTGTAATGGTGATATCATGTGGCATGCTGATGACAAATTGGGTTATGGGTTTCATATTTTTGGTGATCGAGCGCAACTTTTTGCTTAGGAAGAAGGTGTTGTATTTTGTTTATGGAATGAAGAAGGGTATTCAGTTTCTCATGTGGGGGAGTCTGATTCTTCTCACATGGCTACTCTTGATCAAACGCGGGCATCAGCAATCGAAAGTTTCCACTAGGATTCTGGCTTACATCACGCGAAGTATCGTTGCAGTTGTTATTGGGGCATTTTTGTGGTTGTTAAAGACTTTGTTGGTTCTGATCTTAGCATCTAAATTCGAGGCGGTCACCTATTTTGATAGAATTCAAGAATCGATATTCATTCAATATGTTCTTCAGACACTTTCAGGACCGCCGTTGATGGAGGAGGCTTATGAAATATCACGAGAAGGGAAGGAGAAAGAGGTCATTGACATGACAAAGCTTCAAAAGATAAAGCAAGAGAAGGTTTCTTCTTGGACCTTGAAGGTATTGATGGATGCAGTAACTAGTTCAGGGCTATCCACCATCTCTCATACAATGGAGGGGATAGAGGATCTAAATGAACAGAGAGATAAAGAGATCACCAGTGAGATGGAAGCAACTGCTGCTGCACATGACATTTTCCTTAACGTCGCTCCGCGTGGTTCTAACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

420

Amino Acids

47.63

Weight (kDa)

9.02

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12080 AT5G12080 AT5G12080 AT5G19520 AT5G19520
fragaria_vesca	FvH4_2g31211 FvH4_2g31220 FvH4_2g31230 FvH4_2g31240
malus_domestica	MD08G1070000.v1.1 MD15G1052100.v1.1
prunus_persica	Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1
pyrus_communis	pycom08g05800 pycom15g04990 pycom16g12570
rosa_chinensis	RchiOBHm_Chr1g0326931 RchiOBHm_Chr1g0326941 RchiOBHm_Chr6g0276141 RchiOBHm_Chr6g0283901 RchiOBHm_Chr6g0311561 RchiOBHm_Chr6g0311571 RchiOBHm_Chr6g0311581 RchiOBHm_Chr6g0311591
rosa_laevigata	RLG00000010389 RLG00000010390 RLG00000010391 RLG00000010393 RLG00000012788 RLG00000030050
rosa_multiflora	Rmu_sc0003315.1_g000003 Rmu_sc0006781.1_g000009 Rmu_sc0007556.1_g000006 Rmu_sc0018059.1_g000002 Rmu_sc0018059.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323490 Rroxscaffold_7G00157470 Rroxscaffold_7G00157480 Rroxscaffold_7G00157490 Rroxscaffold_7G00185080
rosa_rugosa	Rorug01G0062100 Rorug01G0062300 Rorug06G0158200 Rorug06G0158300 Rorug06G0389800.1 Rorug06G0389900
rosa_samantha	Rh1AG079400 Rh1BG063600 Rh1CG077000 Rh1DG083500 Rh6AG504700 Rh6AG504800 Rh6AG504900 Rh6BG272400 Rh6BG515600 Rh6BG515700 Rh6BG515800 Rh6CG521400 Rh6CG521600 Rh6DG266500 Rh6DG507300 Rh6DG507400
rosa_wichuraiana	Rw1G006300 Rw6G018310 Rw6G023400 Rw6G043960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	289, 774, 823, 1246
AciI	CCGC	6 cut(s)	314, 386, 774, 908, 977, 1244
AclWI	GGATC	4 cut(s)	161, 210, 285, 1167
AcsI	RAATTY	3 cut(s)	220, 899, 927
AcuI	CTGAAG	2 cut(s)	75, 944
AfiI	CCNNNNNNNGG	3 cut(s)	29, 323, 395
AgsI	TTSAA	6 cut(s)	244, 350, 932, 950, 1052, 1090
AhlI	ACTAGT	2 cut(s)	194, 1112
AjnI	CCWGG	2 cut(s)	322, 394
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	5 cut(s)	95, 212, 522, 538, 1048
AluI	AGCT	5 cut(s)	95, 212, 522, 538, 1048
Alw26I	GTCTC	2 cut(s)	185, 324
AlwI	GGATC	4 cut(s)	161, 210, 285, 1167
ApeKI	GCWGC	4 cut(s)	13, 209, 1211, 1214
ApoI	RAATTY	3 cut(s)	220, 899, 927
AspLEI	GCGC	2 cut(s)	586, 660
AspS9I	GGNCC	2 cut(s)	974, 1083
AsuHPI	GGTGA	6 cut(s)	44, 176, 607, 661, 904, 1180
AsuNHI	GCTAGC	2 cut(s)	95, 518
AvaII	GGWCC	2 cut(s)	974, 1083
BanII	GRGCYC	1 cut(s)	83
BauI	CACGAG	1 cut(s)	1008
BbsI	GAAGAC	1 cut(s)	429
BbvI	GCAGC	4 cut(s)	25, 221, 1198, 1201
BccI	CCATC	4 cut(s)	979, 1093, 1139, 1192
BceAI	ACGGC	4 cut(s)	301, 373, 381, 964
BciT130I	CCWGG	2 cut(s)	324, 396
BclI	TGATCA	1 cut(s)	765
BcoDI	GTCTC	2 cut(s)	185, 324
BcuI	ACTAGT	2 cut(s)	194, 1112
BfaI	CTAG	5 cut(s)	96, 195, 519, 801, 1113
BglII	AGATCT	1 cut(s)	468
BisI	GCNGC	4 cut(s)	14, 210, 1212, 1215
BlsI	GCNGC	4 cut(s)	15, 211, 1213, 1216
Bme1390I	CCNGG	2 cut(s)	324, 396
Bme18I	GGWCC	2 cut(s)	974, 1083
BmgT120I	GGNCC	2 cut(s)	974, 1083
BmrFI	CCNGG	2 cut(s)	324, 396
BmsI	GCATC	3 cut(s)	787, 902, 1093
BmtI	GCTAGC	2 cut(s)	99, 522
BpiI	GAAGAC	1 cut(s)	429
BpmI	CTGGAG	1 cut(s)	306
Bpu10I	CCTNAGC	1 cut(s)	671
Bsa29I	ATCGAT	1 cut(s)	938
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 323, 395
Bse118I	RCCGGY	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	1191
Bse3DI	GCAATG	2 cut(s)	73, 170
BseBI	CCWGG	2 cut(s)	324, 396
BseCI	ATCGAT	1 cut(s)	938
BseGI	GGATG	2 cut(s)	424, 1108
BseLI	CCNNNNNNNGG	3 cut(s)	29, 323, 395
BseMI	GCAATG	2 cut(s)	73, 170
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	1191
BseRI	GAGGAG	4 cut(s)	286, 356, 428, 1004
BseXI	GCAGC	4 cut(s)	25, 221, 1198, 1201
BsgI	GTGCAG	1 cut(s)	1200
Bsh1236I	CGCG	4 cut(s)	289, 774, 823, 1246
BshVI	ATCGAT	1 cut(s)	938
BsiSI	CCGG	1 cut(s)	437
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	3 cut(s)	29, 323, 395
BsmAI	GTCTC	2 cut(s)	185, 324
BsmBI	CGTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	9 cut(s)	166, 202, 290, 468, 651, 765, 885, 1159, 1185
Bsp68I	TCGCGA	1 cut(s)	289
BspACI	CCGC	6 cut(s)	314, 386, 774, 908, 977, 1244
BspCNI	CTCAG	1 cut(s)	95
BspDI	ATCGAT	1 cut(s)	938
BspFNI	CGCG	4 cut(s)	289, 774, 823, 1246
BspOI	GCTAGC	2 cut(s)	99, 522
BspPI	GGATC	4 cut(s)	161, 210, 285, 1167
BsrDI	GCAATG	2 cut(s)	73, 170
BsrFI	RCCGGY	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	1191
BssAI	RCCGGY	1 cut(s)	436
BssMI	GATC	9 cut(s)	166, 202, 290, 468, 651, 765, 885, 1159, 1185
BssSI	CACGAG	1 cut(s)	1008
Bst2BI	CACGAG	1 cut(s)	1008
Bst2UI	CCWGG	2 cut(s)	324, 396
Bst4CI	ACNGT	1 cut(s)	529
Bst6I	CTCTTC	4 cut(s)	94, 183, 345, 448
BstAPI	GCANNNNNTGC	2 cut(s)	215, 1211
BstC8I	GCNNGC	5 cut(s)	97, 438, 520, 611, 776
BstDEI	CTNAG	4 cut(s)	82, 111, 671, 889
BstEII	GGTNACC	1 cut(s)	910
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	424, 1108
BstFNI	CGCG	4 cut(s)	289, 774, 823, 1246
BstHHI	GCGC	2 cut(s)	586, 660
BstKTI	GATC	9 cut(s)	169, 205, 293, 471, 654, 768, 888, 1162, 1188
BstMAI	GTCTC	2 cut(s)	185, 324
BstMBI	GATC	9 cut(s)	166, 202, 290, 468, 651, 765, 885, 1159, 1185
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 308, 380, 1211
BstNI	CCWGG	2 cut(s)	324, 396
BstNSI	RCATGY	1 cut(s)	613
BstPI	GGTNACC	1 cut(s)	910
BstSCI	CCNGG	2 cut(s)	322, 394
BstUI	CGCG	4 cut(s)	289, 774, 823, 1246
BstV1I	GCAGC	4 cut(s)	25, 221, 1198, 1201
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	2 cut(s)	468, 1159
BstXI	CCANNNNNNTGG	1 cut(s)	1198
BstYI	RGATCY	2 cut(s)	468, 1159
Bsu15I	ATCGAT	1 cut(s)	938
BsuTUI	ATCGAT	1 cut(s)	938
BtsCI	GGATG	2 cut(s)	424, 1108
BtsIMutI	CAGTG	1 cut(s)	1198
BtuMI	TCGCGA	1 cut(s)	289
Cac8I	GCNNGC	5 cut(s)	97, 438, 520, 611, 776
CfoI	GCGC	2 cut(s)	586, 660
Cfr10I	RCCGGY	1 cut(s)	436
Cfr13I	GGNCC	2 cut(s)	974, 1083
ClaI	ATCGAT	1 cut(s)	938
CviAII	CATG	6 cut(s)	603, 610, 727, 753, 1039, 1220
DdeI	CTNAG	4 cut(s)	82, 111, 671, 889
DpnI	GATC	9 cut(s)	168, 204, 292, 470, 653, 767, 887, 1161, 1187
DpnII	GATC	9 cut(s)	166, 202, 290, 468, 651, 765, 885, 1159, 1185
Eam1104I	CTCTTC	4 cut(s)	94, 183, 345, 448
EarI	CTCTTC	4 cut(s)	94, 183, 345, 448
Eco24I	GRGCYC	1 cut(s)	83
Eco32I	GATATC	1 cut(s)	600
Eco47I	GGWCC	2 cut(s)	974, 1083
Eco57I	CTGAAG	2 cut(s)	75, 944
Eco91I	GGTNACC	1 cut(s)	910
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoO65I	GGTNACC	1 cut(s)	910
EcoRI	GAATTC	1 cut(s)	927
EcoRII	CCWGG	2 cut(s)	322, 394
EcoRV	GATATC	1 cut(s)	600
EcoT38I	GRGCYC	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	324
FaeI	CATG	6 cut(s)	606, 613, 730, 756, 1042, 1223
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	6 cut(s)	602, 609, 726, 752, 1038, 1219
FauI	CCCGC	2 cut(s)	321, 767
FbaI	TGATCA	1 cut(s)	765
Fnu4HI	GCNGC	4 cut(s)	14, 210, 1212, 1215
FokI	GGATG	2 cut(s)	431, 1115
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	4 cut(s)	14, 210, 1212, 1215
FspBI	CTAG	5 cut(s)	96, 195, 519, 801, 1113
GlaI	GCGC	2 cut(s)	585, 659
GluI	GCNGC	4 cut(s)	14, 210, 1212, 1215
GsuI	CTGGAG	1 cut(s)	306
HapII	CCGG	1 cut(s)	437
HhaI	GCGC	2 cut(s)	586, 660
Hin1II	CATG	6 cut(s)	606, 613, 730, 756, 1042, 1223
Hin6I	GCGC	2 cut(s)	584, 658
HinP1I	GCGC	2 cut(s)	584, 658
HindIII	AAGCTT	1 cut(s)	1046
HinfI	GANTC	9 cut(s)	86, 159, 251, 284, 544, 736, 742, 805, 935
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	6 cut(s)	44, 176, 607, 661, 904, 1180
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	5 cut(s)	7, 85, 741, 885, 963
Hpy188III	TCNNGA	7 cut(s)	156, 288, 472, 763, 932, 972, 1008
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	1 cut(s)	1241
HpyAV	CCTTC	8 cut(s)	48, 111, 673, 703, 1007, 1012, 1063, 1084
HpyCH4III	ACNGT	1 cut(s)	529
HpyCH4IV	ACGT	1 cut(s)	1236
HpyCH4V	TGCA	5 cut(s)	218, 383, 836, 1106, 1217
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 308, 380, 1211
HpyF3I	CTNAG	4 cut(s)	82, 111, 671, 889
HpySE526I	ACGT	1 cut(s)	1236
Hsp92II	CATG	6 cut(s)	606, 613, 730, 756, 1042, 1223
HspAI	GCGC	2 cut(s)	584, 658
KroI	GCCGGC	1 cut(s)	436
KroNI	GCCGGC	1 cut(s)	438
Ksp22I	TGATCA	1 cut(s)	765
Kzo9I	GATC	9 cut(s)	166, 202, 290, 468, 651, 765, 885, 1159, 1185
LmnI	GCTCC	1 cut(s)	1246
Lsp1109I	GCAGC	4 cut(s)	25, 221, 1198, 1201
LweI	GCATC	3 cut(s)	787, 902, 1093
MaeI	CTAG	5 cut(s)	96, 195, 519, 801, 1113
MaeII	ACGT	1 cut(s)	1236
MaeIII	GTNAC	2 cut(s)	910, 1108
MalI	GATC	9 cut(s)	168, 204, 292, 470, 653, 767, 887, 1161, 1187
MboI	GATC	9 cut(s)	166, 202, 290, 468, 651, 765, 885, 1159, 1185
MflI	RGATCY	2 cut(s)	468, 1159
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	4 cut(s)	220, 622, 899, 927
MlyI	GAGTC	3 cut(s)	80, 260, 745
MmeI	TCCRAC	1 cut(s)	31
MroNI	GCCGGC	1 cut(s)	436
MseI	TTAA	2 cut(s)	866, 1233
MslI	CAYNNNNRTG	3 cut(s)	614, 856, 1037
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	2 cut(s)	324, 396
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	2 cut(s)	324, 396
MvnI	CGCG	4 cut(s)	289, 774, 823, 1246
MwoI	GCNNNNNNNGC	4 cut(s)	215, 308, 380, 1211
NaeI	GCCGGC	1 cut(s)	438
NdeII	GATC	9 cut(s)	166, 202, 290, 468, 651, 765, 885, 1159, 1185
NgoMIV	GCCGGC	1 cut(s)	436
NheI	GCTAGC	2 cut(s)	95, 518
NlaIII	CATG	6 cut(s)	606, 613, 730, 756, 1042, 1223
NmuCI	GTSAC	1 cut(s)	910
NruI	TCGCGA	1 cut(s)	289
NspI	RCATGY	1 cut(s)	613
PaeI	GCATGC	1 cut(s)	613
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PctI	GAATGC	1 cut(s)	385
PdiI	GCCGGC	1 cut(s)	438
PfeI	GAWTC	6 cut(s)	159, 284, 544, 742, 805, 935
PkrI	GCNGC	4 cut(s)	15, 211, 1213, 1216
PleI	GAGTC	3 cut(s)	80, 259, 744
PpsI	GAGTC	3 cut(s)	80, 259, 744
Psp6I	CCWGG	2 cut(s)	322, 394
PspEI	GGTNACC	1 cut(s)	910
PspGI	CCWGG	2 cut(s)	322, 394
PspPI	GGNCC	2 cut(s)	974, 1083
PsuI	RGATCY	2 cut(s)	468, 1159
PvuII	CAGCTG	1 cut(s)	212
RruI	TCGCGA	1 cut(s)	289
RseI	CAYNNNNRTG	3 cut(s)	614, 856, 1037
SaqAI	TTAA	2 cut(s)	866, 1233
SatI	GCNGC	4 cut(s)	14, 210, 1212, 1215
Sau3AI	GATC	9 cut(s)	166, 202, 290, 468, 651, 765, 885, 1159, 1185
Sau96I	GGNCC	2 cut(s)	974, 1083
SchI	GAGTC	3 cut(s)	80, 260, 745
ScrFI	CCNGG	2 cut(s)	324, 396
SduI	GDGCHC	1 cut(s)	83
SfaNI	GCATC	3 cut(s)	787, 902, 1093
SinI	GGWCC	2 cut(s)	974, 1083
SmiMI	CAYNNNNRTG	3 cut(s)	614, 856, 1037
SpeI	ACTAGT	2 cut(s)	194, 1112
SphI	GCATGC	1 cut(s)	613
Sse9I	AATT	4 cut(s)	220, 622, 899, 927
SsiI	CCGC	6 cut(s)	314, 386, 774, 908, 977, 1244
SspMI	CTAG	5 cut(s)	96, 195, 519, 801, 1113
StyD4I	CCNGG	2 cut(s)	322, 394
TaaI	ACNGT	1 cut(s)	529
TaiI	ACGT	1 cut(s)	1239
TaqI	TCGA	6 cut(s)	155, 473, 654, 788, 903, 938
TasI	AATT	4 cut(s)	220, 622, 899, 927
TfiI	GAWTC	6 cut(s)	159, 284, 544, 742, 805, 935
Tru1I	TTAA	2 cut(s)	866, 1233
Tru9I	TTAA	2 cut(s)	866, 1233
TscAI	CASTG	1 cut(s)	1198
TseFI	GTSAC	1 cut(s)	910
TseI	GCWGC	4 cut(s)	13, 209, 1211, 1214
Tsp45I	GTSAC	1 cut(s)	910
TspRI	CASTG	1 cut(s)	1198
VpaK11BI	GGWCC	2 cut(s)	974, 1083
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	3 cut(s)	220, 899, 927
XceI	RCATGY	1 cut(s)	613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	805
XspI	CTAG	5 cut(s)	96, 195, 519, 801, 1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.