Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000828

Physical Location & Seq

Genomic Coordinates Forward (+)

15499110 .. 15500099

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55650

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCAAAGCGAAGAGGGAAATGAAGCAGCAGACGGTTCTTCTTCAGCTCCAAAGCAAGGCTCAATGGACTCTCCCAACAAATTGCCAGCTGAAATTTCCAATGAGACTCAAACTACCAGAAAGTCATTCAATCGGTCACTTATCTCCAAACCCAAGTCCAGAAAGTCGTTCAACAGGTCAGTTCTCTCCAAGCCCAAGTCCAGATTTGGGGAACCGTCAGTGCCCATTGACTCTGATTTGTTTGAAGAGAGCATTAGCGTGGAAAATTCACCTTCTAATAGTAATATGGGTTCATTCAATAGGCCCACTAATAATTCCCCTGATTTTAGAACTGTCTCCATCAGCTCTGCATGGAACCCAGTAATGGCGTCTCCAGGCAGGGCCAAAGCTGAAGAGGAGGACGAAAAGTTTTACAAGGTGATCAGGGTATTGATTGAGTGGACTGTTTTCCTTTGCATTTTGGGTGTTTTAGTGGCTAGCTTGACTGTCGAGAAACTCGAGAAGCTTAAGGTTTGGGGGCTGGAGTTTTGGAAATGGTGTGTGCTTCTGATGGTAGTATTCGGTGGCACGCTGCTCACATATTGTTTCACGCATTTCGTAGTCCTTTTCACCAAGAGGAACATACTGCTCAGGAAAAAGCTGTTGTACTATGTTTATGGAGTGAAGAAGAGTGTTCAGGTTTTCATGTGGTTGGCTTTGGTTCTTCTAACGTGGTTACTATTGTTCAATCCTAGTCGTCATGAGATTAAGCGATCAAAGACTCGTACCAACATTTTGAAATATGTTACTTGGACTCTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

267

Amino Acids

30.43

Weight (kDa)

9.68

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12080 AT5G12080 AT5G12080 AT5G19520 AT5G19520
fragaria_vesca	FvH4_2g31211 FvH4_2g31220 FvH4_2g31230 FvH4_2g31240
malus_domestica	MD08G1070000.v1.1 MD15G1052100.v1.1
prunus_persica	Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1
pyrus_communis	pycom08g05800 pycom15g04990 pycom16g12570
rosa_chinensis	RchiOBHm_Chr1g0326931 RchiOBHm_Chr1g0326941 RchiOBHm_Chr6g0276141 RchiOBHm_Chr6g0283901 RchiOBHm_Chr6g0311561 RchiOBHm_Chr6g0311571 RchiOBHm_Chr6g0311581 RchiOBHm_Chr6g0311591
rosa_laevigata	RLG00000010389 RLG00000010390 RLG00000010391 RLG00000010393 RLG00000012788 RLG00000030050
rosa_multiflora	Rmu_sc0003315.1_g000003 Rmu_sc0006781.1_g000009 Rmu_sc0007556.1_g000006 Rmu_sc0018059.1_g000002 Rmu_sc0018059.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323490 Rroxscaffold_7G00157470 Rroxscaffold_7G00157480 Rroxscaffold_7G00157490 Rroxscaffold_7G00185080
rosa_rugosa	Rorug01G0062100 Rorug01G0062300 Rorug06G0158200 Rorug06G0158300 Rorug06G0389800.1 Rorug06G0389900
rosa_samantha	Rh1AG079400 Rh1BG063600 Rh1CG077000 Rh1DG083500 Rh6AG504700 Rh6AG504800 Rh6AG504900 Rh6BG272400 Rh6BG515600 Rh6BG515700 Rh6BG515800 Rh6CG521400 Rh6CG521600 Rh6DG266500 Rh6DG507300 Rh6DG507400
rosa_wichuraiana	Rw1G006300 Rw6G018310 Rw6G023400 Rw6G043960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	93, 265
AcuI	CTGAAG	2 cut(s)	27, 411
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	2 cut(s)	647, 766
AfiI	CCNNNNNNNGG	3 cut(s)	56, 207, 364
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	6 cut(s)	130, 172, 245, 298, 727, 778
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	7 cut(s)	47, 89, 345, 389, 480, 505, 640
AluI	AGCT	7 cut(s)	47, 89, 345, 389, 480, 505, 640
Alw26I	GTCTC	3 cut(s)	98, 340, 375
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	2 cut(s)	302, 381
ApeKI	GCWGC	2 cut(s)	26, 571
ApoI	RAATTY	2 cut(s)	93, 265
AspS9I	GGNCC	2 cut(s)	303, 381
AsuHPI	GGTGA	3 cut(s)	261, 430, 601
AsuNHI	GCTAGC	1 cut(s)	476
AvaI	CYCGRG	1 cut(s)	497
BaeGI	GKGCMC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	38, 558
BccI	CCATC	2 cut(s)	347, 544
BciT130I	CCWGG	1 cut(s)	375
BclI	TGATCA	1 cut(s)	420
BcoDI	GTCTC	3 cut(s)	98, 340, 375
BfaI	CTAG	2 cut(s)	477, 732
BfrI	CTTAAG	1 cut(s)	506
BisI	GCNGC	2 cut(s)	27, 572
BlsI	GCNGC	2 cut(s)	28, 573
Bme1390I	CCNGG	1 cut(s)	375
BmeT110I	CYCGRG	1 cut(s)	497
BmgT120I	GGNCC	2 cut(s)	303, 381
BmiI	GGNNCC	2 cut(s)	213, 356
BmrFI	CCNGG	1 cut(s)	375
BmrI	ACTGGG	1 cut(s)	353
BmtI	GCTAGC	1 cut(s)	480
BmuI	ACTGGG	1 cut(s)	353
BpmI	CTGGAG	2 cut(s)	357, 542
Bpu10I	CCTNAGC	1 cut(s)	629
BsaHI	GRCGYC	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 207, 364
Bse1I	ACTGG	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	375
BseLI	CCNNNNNNNGG	3 cut(s)	56, 207, 364
BseMII	CTCAG	1 cut(s)	643
BseNI	ACTGG	1 cut(s)	359
BseRI	GAGGAG	1 cut(s)	410
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	38, 558
BshFI	GGCC	2 cut(s)	304, 383
BsiHKCI	CYCGRG	1 cut(s)	497
BslI	CCNNNNNNNGG	3 cut(s)	56, 207, 364
BsmAI	GTCTC	3 cut(s)	98, 340, 375
BsmBI	CGTCTC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	304, 383
BsoBI	CYCGRG	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	420, 752
BspANI	GGCC	2 cut(s)	304, 383
BspCNI	CTCAG	1 cut(s)	642
BspHI	TCATGA	1 cut(s)	739
BspLI	GGNNCC	2 cut(s)	213, 356
BspOI	GCTAGC	1 cut(s)	480
BspTI	CTTAAG	1 cut(s)	506
BsrI	ACTGG	1 cut(s)	359
BssMI	GATC	2 cut(s)	420, 752
BssNI	GRCGYC	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	5 cut(s)	35, 216, 334, 445, 487
Bst6I	CTCTTC	4 cut(s)	6, 240, 387, 662
BstACI	GRCGYC	1 cut(s)	368
BstAFI	CTTAAG	1 cut(s)	506
BstC8I	GCNNGC	3 cut(s)	87, 478, 569
BstDEI	CTNAG	2 cut(s)	629, 801
BstKTI	GATC	2 cut(s)	423, 755
BstMAI	GTCTC	3 cut(s)	98, 340, 375
BstMBI	GATC	2 cut(s)	420, 752
BstNI	CCWGG	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	373
BstSLI	GKGCMC	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	38, 558
BsuRI	GGCC	2 cut(s)	304, 383
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	3 cut(s)	87, 478, 569
CciI	TCATGA	1 cut(s)	739
Cfr13I	GGNCC	2 cut(s)	303, 381
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	2 cut(s)	646, 765
CviAII	CATG	3 cut(s)	351, 685, 740
CviQI	GTAC	2 cut(s)	646, 765
DdeI	CTNAG	2 cut(s)	629, 801
DpnI	GATC	2 cut(s)	422, 754
DpnII	GATC	2 cut(s)	420, 752
Eam1104I	CTCTTC	4 cut(s)	6, 240, 387, 662
EarI	CTCTTC	4 cut(s)	6, 240, 387, 662
Eco57I	CTGAAG	2 cut(s)	27, 411
Eco88I	CYCGRG	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	373
Esp3I	CGTCTC	1 cut(s)	375
FaeI	CATG	3 cut(s)	354, 688, 743
FaiI	YATR	9 cut(s)	287, 352, 580, 623, 651, 657, 686, 741, 783
FatI	CATG	3 cut(s)	350, 684, 739
FbaI	TGATCA	1 cut(s)	420
Fnu4HI	GCNGC	2 cut(s)	27, 572
Fsp4HI	GCNGC	2 cut(s)	27, 572
FspBI	CTAG	2 cut(s)	477, 732
GluI	GCNGC	2 cut(s)	27, 572
GsuI	CTGGAG	2 cut(s)	357, 542
HaeIII	GGCC	2 cut(s)	304, 383
HgaI	GACGC	1 cut(s)	357
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	3 cut(s)	354, 688, 743
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	5 cut(s)	68, 106, 230, 760, 793
HphI	GGTGA	3 cut(s)	261, 430, 601
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	2 cut(s)	235, 549
Hpy188III	TCNNGA	6 cut(s)	159, 201, 490, 499, 631, 740
Hpy8I	GTNNAC	1 cut(s)	441
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	5 cut(s)	35, 216, 334, 445, 487
HpyCH4IV	ACGT	1 cut(s)	710
HpyCH4V	TGCA	3 cut(s)	4, 350, 456
HpyF3I	CTNAG	2 cut(s)	629, 801
HpySE526I	ACGT	1 cut(s)	710
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	3 cut(s)	354, 688, 743
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	2 cut(s)	420, 752
LmnI	GCTCC	1 cut(s)	52
Lsp1109I	GCAGC	2 cut(s)	38, 558
MaeI	CTAG	2 cut(s)	477, 732
MaeII	ACGT	1 cut(s)	710
MaeIII	GTNAC	3 cut(s)	135, 714, 784
MalI	GATC	2 cut(s)	422, 754
MboI	GATC	2 cut(s)	420, 752
MboII	GAAGA	8 cut(s)	23, 30, 33, 257, 404, 676, 679, 695
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	4 cut(s)	80, 93, 265, 313
MlyI	GAGTC	5 cut(s)	62, 100, 224, 754, 787
MnlI	CCTC	4 cut(s)	7, 388, 391, 609
MseI	TTAA	2 cut(s)	507, 747
MslI	CAYNNNNRTG	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	89
MspCI	CTTAAG	1 cut(s)	506
MspR9I	CCNGG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	375
NdeII	GATC	2 cut(s)	420, 752
NheI	GCTAGC	1 cut(s)	476
NlaIII	CATG	3 cut(s)	354, 688, 743
NlaIV	GGNNCC	2 cut(s)	213, 356
NmuCI	GTSAC	1 cut(s)	135
PaeR7I	CTCGAG	1 cut(s)	497
PagI	TCATGA	1 cut(s)	739
PcsI	WCGNNNNNNNCGW	1 cut(s)	495
PkrI	GCNGC	2 cut(s)	28, 573
PleI	GAGTC	5 cut(s)	62, 100, 224, 754, 787
PpsI	GAGTC	5 cut(s)	62, 100, 224, 754, 787
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	213, 356
PspPI	GGNCC	2 cut(s)	303, 381
PsrI	GAACNNNNNNTAC	2 cut(s)	274, 306
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	2 cut(s)	647, 766
RsaNI	GTAC	2 cut(s)	646, 765
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	507, 747
SatI	GCNGC	2 cut(s)	27, 572
Sau3AI	GATC	2 cut(s)	420, 752
Sau96I	GGNCC	2 cut(s)	303, 381
SchI	GAGTC	5 cut(s)	62, 100, 224, 754, 787
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	225
Sfr274I	CTCGAG	1 cut(s)	497
SlaI	CTCGAG	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	497, 506
SmoI	CTYRAG	2 cut(s)	497, 506
Sse9I	AATT	4 cut(s)	80, 93, 265, 313
SspMI	CTAG	2 cut(s)	477, 732
StyD4I	CCNGG	1 cut(s)	373
TaaI	ACNGT	5 cut(s)	35, 216, 334, 445, 487
TaiI	ACGT	1 cut(s)	713
TaqI	TCGA	2 cut(s)	489, 498
TaqII	GACCGA	1 cut(s)	123
TasI	AATT	4 cut(s)	80, 93, 265, 313
TatI	WGTACW	1 cut(s)	645
Tru1I	TTAA	2 cut(s)	507, 747
Tru9I	TTAA	2 cut(s)	507, 747
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	135
TseI	GCWGC	2 cut(s)	26, 571
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	3 cut(s)	36, 282, 673
TspRI	CASTG	1 cut(s)	225
Vha464I	CTTAAG	1 cut(s)	506
XapI	RAATTY	2 cut(s)	93, 265
XhoI	CTCGAG	1 cut(s)	497
XspI	CTAG	2 cut(s)	477, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.