Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000828

Physical Location & Seq

Genomic Coordinates Forward (+)

70985521 .. 70986540

Gene Structure 1020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG515700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGACTGACACCAAAACAGTTCTAAAGCAATTTGAGAAATTTTTTACTAGCTTGGTGATTGTTATTACCATCGTAGTGTGGCTACTGTTGGTGGGAATTGCAAGTACAAACCTAGTTGTTTTCCTCTCAACACAGTTCTTATTGGCAGCTTTTATGTTTGGAAACACTTGCAAGAATGTATTTGAAGCTATCGTGTTCATGTTTGTGACACATCCATTTGATGTTGGTGATCGCATTGTTGTTGATGATGTTTCGTTGATGGTTGAAGAGATGAACGTCTTAACTACCACCTTCTTGAAACCAAATAATGAAAAGGTGTACTATCCAAATTCAGTTTTGTGCTCCAAAATCATCAGCAATTATTACAGAAGTCCAGATATGGGAGATACAGTGGAATTCTCAATTATTTTGACACCAGTGGAGAAGATAGACATGCTGAGAAAGAGAATAAAGGAATACTTGGAGAGCAAACCGCAGCATTGGCGTCCAGGCCACAGTGTGGTGGTGATTGATATCGAAGATGTGAATAAGTTAAAGATGGCACTCAATATTTGTCACACTATGAACTTTCAAGAAATTGGTGAAAGGAATAAACGGCGAACCGAGCTAGTCATCGAATTGATGAGAACTTTGGAAGACCTAAACATCACATACAGTCTGCTGCCCCAAGAAGTTCACCTCACTCAAAATAAAGCAGATGCAACCGTTTCCTTCAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

240

Amino Acids

27.72

Weight (kDa)

6.23

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MS_channel_2nd	PF00924	57 - 122	1.2e-11	Mechanosensitive ion channel, beta-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12080 AT5G12080 AT5G12080 AT5G19520 AT5G19520
fragaria_vesca	FvH4_2g31211 FvH4_2g31220 FvH4_2g31230 FvH4_2g31240
malus_domestica	MD08G1070000.v1.1 MD15G1052100.v1.1
prunus_persica	Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1
pyrus_communis	pycom08g05800 pycom15g04990 pycom16g12570
rosa_chinensis	RchiOBHm_Chr1g0326931 RchiOBHm_Chr1g0326941 RchiOBHm_Chr6g0276141 RchiOBHm_Chr6g0283901 RchiOBHm_Chr6g0311561 RchiOBHm_Chr6g0311571 RchiOBHm_Chr6g0311581 RchiOBHm_Chr6g0311591
rosa_laevigata	RLG00000010389 RLG00000010390 RLG00000010391 RLG00000010393 RLG00000012788 RLG00000030050
rosa_multiflora	Rmu_sc0003315.1_g000003 Rmu_sc0006781.1_g000009 Rmu_sc0007556.1_g000006 Rmu_sc0018059.1_g000002 Rmu_sc0018059.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323490 Rroxscaffold_7G00157470 Rroxscaffold_7G00157480 Rroxscaffold_7G00157490 Rroxscaffold_7G00185080
rosa_rugosa	Rorug01G0062100 Rorug01G0062300 Rorug06G0158200 Rorug06G0158300 Rorug06G0389800.1 Rorug06G0389900
rosa_samantha	Rh1AG079400 Rh1BG063600 Rh1CG077000 Rh1DG083500 Rh6AG504700 Rh6AG504800 Rh6AG504900 Rh6BG272400 Rh6BG515600 Rh6BG515700 Rh6BG515800 Rh6CG521400 Rh6CG521600 Rh6DG266500 Rh6DG507300 Rh6DG507400
rosa_wichuraiana	Rw1G006300 Rw6G018310 Rw6G023400 Rw6G043960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	499
AciI	CCGC	1 cut(s)	473
AcsI	RAATTY	3 cut(s)	38, 328, 395
AcyI	GRCGYC	1 cut(s)	484
AdeI	CACNNNGTG	1 cut(s)	499
AfaI	GTAC	2 cut(s)	106, 320
AfiI	CCNNNNNNNGG	2 cut(s)	380, 499
AgsI	TTSAA	5 cut(s)	185, 266, 298, 572, 715
AjnI	CCWGG	1 cut(s)	487
AluBI	AGCT	4 cut(s)	51, 149, 188, 607
AluI	AGCT	4 cut(s)	51, 149, 188, 607
Alw21I	GWGCWC	1 cut(s)	344
AoxI	GGCC	1 cut(s)	490
ApeKI	GCWGC	3 cut(s)	146, 475, 661
ApoI	RAATTY	3 cut(s)	38, 328, 395
AsuHPI	GGTGA	5 cut(s)	67, 239, 517, 593, 668
BbsI	GAAGAC	1 cut(s)	642
Bbv12I	GWGCWC	1 cut(s)	344
BbvI	GCAGC	3 cut(s)	158, 487, 648
BccI	CCATC	3 cut(s)	77, 253, 532
BceAI	ACGGC	1 cut(s)	611
BciT130I	CCWGG	1 cut(s)	489
BfaI	CTAG	3 cut(s)	48, 113, 608
BisI	GCNGC	3 cut(s)	147, 476, 662
BlsI	GCNGC	3 cut(s)	148, 477, 663
Bme1390I	CCNGG	1 cut(s)	489
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	1 cut(s)	688
BpiI	GAAGAC	1 cut(s)	642
BsaBI	GATNNNNATC	1 cut(s)	512
BsaHI	GRCGYC	1 cut(s)	484
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	380, 499
Bse1I	ACTGG	1 cut(s)	416
Bse8I	GATNNNNATC	1 cut(s)	512
BseBI	CCWGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	211
BseJI	GATNNNNATC	1 cut(s)	512
BseLI	CCNNNNNNNGG	2 cut(s)	380, 499
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	416
BseXI	GCAGC	3 cut(s)	158, 487, 648
BshFI	GGCC	1 cut(s)	492
BsiHKAI	GWGCWC	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	380, 499
BsnI	GGCC	1 cut(s)	492
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	1 cut(s)	492
BspCNI	CTCAG	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	416
BssMI	GATC	1 cut(s)	229
BssNI	GRCGYC	1 cut(s)	484
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	7 cut(s)	19, 87, 135, 391, 497, 656, 706
Bst6I	CTCTTC	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	484
BstDEI	CTNAG	1 cut(s)	437
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	2 cut(s)	481, 604
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	1 cut(s)	487
BstV1I	GCAGC	3 cut(s)	158, 487, 648
BstV2I	GAAGAC	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	3 cut(s)	396, 423, 502
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	2 cut(s)	105, 319
CviAII	CATG	2 cut(s)	199, 433
CviJI	RGCY	6 cut(s)	51, 82, 149, 188, 492, 607
CviKI_1	RGCY	6 cut(s)	51, 82, 149, 188, 492, 607
CviQI	GTAC	2 cut(s)	105, 319
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
DraIII	CACNNNGTG	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco32I	GATATC	1 cut(s)	514
EcoRI	GAATTC	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	487
EcoRV	GATATC	1 cut(s)	514
FaeI	CATG	2 cut(s)	202, 436
FaiI	YATR	6 cut(s)	155, 200, 380, 434, 563, 652
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FatI	CATG	2 cut(s)	198, 432
Fnu4HI	GCNGC	3 cut(s)	147, 476, 662
FokI	GGATG	1 cut(s)	198
Fsp4HI	GCNGC	3 cut(s)	147, 476, 662
FspBI	CTAG	3 cut(s)	48, 113, 608
GluI	GCNGC	3 cut(s)	147, 476, 662
HaeIII	GGCC	1 cut(s)	492
HgaI	GACGC	1 cut(s)	473
Hin1I	GRCGYC	1 cut(s)	484
Hin1II	CATG	2 cut(s)	202, 436
HphI	GGTGA	5 cut(s)	67, 239, 517, 593, 668
Hpy166II	GTNNAC	2 cut(s)	319, 676
Hpy188III	TCNNGA	4 cut(s)	295, 374, 572, 715
Hpy8I	GTNNAC	2 cut(s)	319, 676
HpyAV	CCTTC	2 cut(s)	301, 721
HpyCH4III	ACNGT	7 cut(s)	19, 87, 135, 391, 497, 656, 706
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	3 cut(s)	101, 171, 701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	481, 604
HpyF3I	CTNAG	1 cut(s)	437
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	484
Hsp92II	CATG	2 cut(s)	202, 436
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	4 cut(s)	387, 429, 474, 501
Lsp1109I	GCAGC	3 cut(s)	158, 487, 648
LweI	GCATC	1 cut(s)	688
MaeI	CTAG	3 cut(s)	48, 113, 608
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	2 cut(s)	205, 554
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	4 cut(s)	278, 436, 530, 647
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	9 cut(s)	29, 38, 96, 328, 358, 395, 402, 576, 617
MnlI	CCTC	2 cut(s)	134, 689
MseI	TTAA	2 cut(s)	281, 533
MslI	CAYNNNNRTG	2 cut(s)	74, 203
MspR9I	CCNGG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	2 cut(s)	481, 604
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	2 cut(s)	202, 436
NmuCI	GTSAC	2 cut(s)	205, 554
NspI	RCATGY	1 cut(s)	436
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	3 cut(s)	148, 477, 663
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
RsaI	GTAC	2 cut(s)	106, 320
RsaNI	GTAC	2 cut(s)	105, 319
RseI	CAYNNNNRTG	2 cut(s)	74, 203
SaqAI	TTAA	2 cut(s)	281, 533
SatI	GCNGC	3 cut(s)	147, 476, 662
Sau3AI	GATC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	489
SduI	GDGCHC	1 cut(s)	344
SfaNI	GCATC	1 cut(s)	688
SmiMI	CAYNNNNRTG	2 cut(s)	74, 203
Sse9I	AATT	9 cut(s)	29, 38, 96, 328, 358, 395, 402, 576, 617
SsiI	CCGC	1 cut(s)	473
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	3 cut(s)	48, 113, 608
StyD4I	CCNGG	1 cut(s)	487
TaaI	ACNGT	7 cut(s)	19, 87, 135, 391, 497, 656, 706
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	2 cut(s)	516, 615
TasI	AATT	9 cut(s)	29, 38, 96, 328, 358, 395, 402, 576, 617
TatI	WGTACW	2 cut(s)	104, 318
Tru1I	TTAA	2 cut(s)	281, 533
Tru9I	TTAA	2 cut(s)	281, 533
TscAI	CASTG	3 cut(s)	396, 423, 502
TseFI	GTSAC	2 cut(s)	205, 554
TseI	GCWGC	3 cut(s)	146, 475, 661
Tsp45I	GTSAC	2 cut(s)	205, 554
TspDTI	ATGAA	4 cut(s)	187, 287, 324, 578
TspRI	CASTG	3 cut(s)	396, 423, 502
Van91I	CCANNNNNTGG	1 cut(s)	499
XapI	RAATTY	3 cut(s)	38, 328, 395
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	3 cut(s)	48, 113, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.