Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000828

Physical Location & Seq

Genomic Coordinates Forward (+)

45872388 .. 45882681

Gene Structure 10294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG266500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGATACCCGCCCTCAATGAGACCCTCACTAGGAGAAAGTCCTTGCAGATATTAGCTTACTCTAAATCCAAGTCACGATTTGGTGAACTACCATATCACGCTGAATTGGAAATGTTATTTGAAGACACTAGTAGTTTAGATGAGCCGGTTGGTGCAAGTTTTCATGGTAATAGCGGCTCATTCACTAGGACTGTCTCCAGCAGTTCTTCCAAGTCCCCAGAGATGCTGTCTCCGGAGAGGCCGAAGAAAAAGGATAAAAAGCTCAACAAGAAGGCTAAATTGCTGTCTCCGGAGAAGCTGAAGTATAAGGATAAAGAGCTCTACAAGAAGGCTAAATTGAAAAGAGATAAGCAGTGGAAAGCATTTAACAAGAAGATCTTGATTAAGTCGACTGTTTTTCTGTGCATTTTGGTTTGTTTAGTGGCTAGCTTCACTTATGAGAAACTAAAGAATCTTATGGTTTGGGGATTGGGGATTTGGAAATGGTGTGTGCTTGTAATGTTGATAGTTGAGGAGATGAACATCTTTACTACAATCTTCTTGAAGTCTAACAATGAGAAGGTATACTATCTGAATTCAGTTTTATCCACAAAAACCATCAGCAATTATTACAGAAGTTCAGATATGAAAGATATTGTGGAGTTCTCGATTGCTTTGACACCTGTGGAGAAGATAGTCAAGCTCAAAGAGAGAATTAAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0080167 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

234

Amino Acids

27.09

Weight (kDa)

9.72

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12080 AT5G12080 AT5G12080 AT5G19520 AT5G19520
fragaria_vesca	FvH4_2g31211 FvH4_2g31220 FvH4_2g31230 FvH4_2g31240
malus_domestica	MD08G1070000.v1.1 MD15G1052100.v1.1
prunus_persica	Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1
pyrus_communis	pycom08g05800 pycom15g04990 pycom16g12570
rosa_chinensis	RchiOBHm_Chr1g0326931 RchiOBHm_Chr1g0326941 RchiOBHm_Chr6g0276141 RchiOBHm_Chr6g0283901 RchiOBHm_Chr6g0311561 RchiOBHm_Chr6g0311571 RchiOBHm_Chr6g0311581 RchiOBHm_Chr6g0311591
rosa_laevigata	RLG00000010389 RLG00000010390 RLG00000010391 RLG00000010393 RLG00000012788 RLG00000030050
rosa_multiflora	Rmu_sc0003315.1_g000003 Rmu_sc0006781.1_g000009 Rmu_sc0007556.1_g000006 Rmu_sc0018059.1_g000002 Rmu_sc0018059.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323490 Rroxscaffold_7G00157470 Rroxscaffold_7G00157480 Rroxscaffold_7G00157490 Rroxscaffold_7G00185080
rosa_rugosa	Rorug01G0062100 Rorug01G0062300 Rorug06G0158200 Rorug06G0158300 Rorug06G0389800.1 Rorug06G0389900
rosa_samantha	Rh1AG079400 Rh1BG063600 Rh1CG077000 Rh1DG083500 Rh6AG504700 Rh6AG504800 Rh6AG504900 Rh6BG272400 Rh6BG515600 Rh6BG515700 Rh6BG515800 Rh6CG521400 Rh6CG521600 Rh6DG266500 Rh6DG507300 Rh6DG507400
rosa_wichuraiana	Rw1G006300 Rw6G018310 Rw6G023400 Rw6G043960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	389, 564
AccIII	TCCGGA	2 cut(s)	232, 289
AciI	CCGC	2 cut(s)	9, 174
AcsI	RAATTY	1 cut(s)	574
AcuI	CTGAAG	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	30
AgsI	TTSAA	3 cut(s)	122, 340, 544
AhlI	ACTAGT	1 cut(s)	128
AluBI	AGCT	6 cut(s)	56, 262, 298, 319, 429, 682
AluI	AGCT	6 cut(s)	56, 262, 298, 319, 429, 682
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	4 cut(s)	14, 199, 234, 291
Aor13HI	TCCGGA	2 cut(s)	232, 289
AoxI	GGCC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	574
AsuHPI	GGTGA	1 cut(s)	95
AsuNHI	GCTAGC	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	321
BccI	CCATC	1 cut(s)	605
BcoDI	GTCTC	4 cut(s)	14, 199, 234, 291
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	4 cut(s)	30, 129, 186, 426
BglII	AGATCT	1 cut(s)	375
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
BmsI	GCATC	1 cut(s)	213
BmtI	GCTAGC	1 cut(s)	429
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	521
BsaI	GGTCTC	1 cut(s)	14
BsaWI	WCCGGW	2 cut(s)	232, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse118I	RCCGGY	1 cut(s)	145
Bse8I	GATNNNNATC	1 cut(s)	521
BseAI	TCCGGA	2 cut(s)	232, 289
BseJI	GATNNNNATC	1 cut(s)	521
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	527
BshFI	GGCC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	3 cut(s)	146, 233, 290
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmAI	GTCTC	4 cut(s)	14, 199, 234, 291
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	241
Bso31I	GGTCTC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp13I	TCCGGA	2 cut(s)	232, 289
Bsp143I	GATC	1 cut(s)	375
BspACI	CCGC	2 cut(s)	9, 174
BspANI	GGCC	1 cut(s)	241
BspEI	TCCGGA	2 cut(s)	232, 289
BspOI	GCTAGC	1 cut(s)	429
BspTNI	GGTCTC	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	145
BssMI	GATC	1 cut(s)	375
BssNAI	GTATAC	1 cut(s)	565
Bst1107I	GTATAC	1 cut(s)	565
Bst4CI	ACNGT	2 cut(s)	193, 394
BstC8I	GCNNGC	1 cut(s)	427
BstKTI	GATC	1 cut(s)	378
BstMAI	GTCTC	4 cut(s)	14, 199, 234, 291
BstMBI	GATC	1 cut(s)	375
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BstZ17I	GTATAC	1 cut(s)	565
BsuRI	GGCC	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	145
CviAII	CATG	1 cut(s)	164
DpnI	GATC	1 cut(s)	377
DpnII	GATC	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	574
EcoT38I	GRGCYC	1 cut(s)	321
FaeI	CATG	1 cut(s)	167
FaiI	YATR	7 cut(s)	94, 165, 306, 438, 458, 565, 626
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	1 cut(s)	163
FauI	CCCGC	1 cut(s)	16
FblI	GTMKAC	2 cut(s)	389, 564
Fnu4HI	GCNGC	1 cut(s)	175
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	4 cut(s)	30, 129, 186, 426
GluI	GCNGC	1 cut(s)	175
GsuI	CTGGAG	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	3 cut(s)	146, 233, 290
Hin1II	CATG	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	1 cut(s)	451
HpaII	CCGG	3 cut(s)	146, 233, 290
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	3 cut(s)	86, 390, 565
Hpy188I	TCNGA	2 cut(s)	573, 622
Hpy188III	TCNNGA	6 cut(s)	75, 233, 290, 379, 541, 646
Hpy8I	GTNNAC	3 cut(s)	86, 390, 565
HpyAV	CCTTC	3 cut(s)	265, 322, 553
HpyCH4III	ACNGT	2 cut(s)	193, 394
HpyCH4V	TGCA	3 cut(s)	46, 155, 405
Hsp92II	CATG	1 cut(s)	167
Kpn2I	TCCGGA	2 cut(s)	232, 289
Kzo9I	GATC	1 cut(s)	375
LpnPI	CCDG	6 cut(s)	159, 211, 231, 246, 303, 675
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	4 cut(s)	30, 129, 186, 426
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	1 cut(s)	377
MboI	GATC	1 cut(s)	375
MboII	GAAGA	6 cut(s)	134, 198, 256, 385, 529, 682
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	6 cut(s)	104, 278, 335, 574, 604, 693
MnlI	CCTC	4 cut(s)	23, 35, 231, 505
MroI	TCCGGA	2 cut(s)	232, 289
MseI	TTAA	3 cut(s)	366, 384, 696
MspI	CCGG	3 cut(s)	146, 233, 290
NdeII	GATC	1 cut(s)	375
NheI	GCTAGC	1 cut(s)	425
NlaIII	CATG	1 cut(s)	167
NmuCI	GTSAC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	451
PkrI	GCNGC	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	321
PsuI	RGATCY	1 cut(s)	375
SacI	GAGCTC	1 cut(s)	321
SalI	GTCGAC	1 cut(s)	388
SaqAI	TTAA	3 cut(s)	366, 384, 696
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	8 cut(s)	58, 264, 300, 321, 431, 564, 664, 684
SfaNI	GCATC	1 cut(s)	213
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	6 cut(s)	104, 278, 335, 574, 604, 693
SsiI	CCGC	2 cut(s)	9, 174
SspMI	CTAG	4 cut(s)	30, 129, 186, 426
SstI	GAGCTC	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	193, 394
TaqI	TCGA	2 cut(s)	389, 647
TasI	AATT	6 cut(s)	104, 278, 335, 574, 604, 693
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	451
Tru1I	TTAA	3 cut(s)	366, 384, 696
Tru9I	TTAA	3 cut(s)	366, 384, 696
TscAI	CASTG	1 cut(s)	359
TseFI	GTSAC	1 cut(s)	72
Tsp45I	GTSAC	1 cut(s)	72
TspDTI	ATGAA	3 cut(s)	152, 533, 641
TspRI	CASTG	1 cut(s)	359
XapI	RAATTY	1 cut(s)	574
XmiI	GTMKAC	2 cut(s)	389, 564
XspI	CTAG	4 cut(s)	30, 129, 186, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.