Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000828

Physical Location & Seq

Genomic Coordinates Reverse (-)

10158925 .. 10159446

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0062100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGCAAGGGCAAGGACAAGTACAAGAGCAAGGCCATTGGCCGTCAACGCCAGTTCTCTAACACCGAAGATCTTCTTATTGACAGTACCTGCACCTATTCAAAGCCAGAAGCTGAACATTATGAAGCCGATGAAGTAGAATTTGCAGAAGGATCAGAAGAGGAGGCGTTGAGTGAAGAAGAATCTGAAAACAAGAAAAGCAAAGGCGTTGAAGGCATTATTGAGATTCAAAATCCTAATTTGCTAAAGCAGAAGAAGGCGTTGAAAGCTAGAGACATTGACATTGGAAAAACAACTGAACTGTCAAGGCGTGAAAGAGAAGAAATAGAGAAAGAGAGAAGCCATGAGAAATATATGAAGCAGCAGGAACAGGGAAAGACTGAACAAGCAAGGAAAGATTTAGAGCGCCTAGCGCTTATACGACAACAAAGGGAGGAGGCTGCTAAGAAGCGAGAAGAAGAAAAAGCTGCCCAAGTACAGAAGAAGATGGTTCAACCCCGCAAACCATTACCTAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

173

Amino Acids

20.16

Weight (kDa)

8.44

Isoelectric Point (pI)

67.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP28	PF10252	78 - 156	8.8e-27	Casein kinase substrate phosphoprotein PP28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0000828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12080 AT5G12080 AT5G12080 AT5G19520 AT5G19520
fragaria_vesca	FvH4_2g31211 FvH4_2g31220 FvH4_2g31230 FvH4_2g31240
malus_domestica	MD08G1070000.v1.1 MD15G1052100.v1.1
prunus_persica	Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1
pyrus_communis	pycom08g05800 pycom15g04990 pycom16g12570
rosa_chinensis	RchiOBHm_Chr1g0326931 RchiOBHm_Chr1g0326941 RchiOBHm_Chr6g0276141 RchiOBHm_Chr6g0283901 RchiOBHm_Chr6g0311561 RchiOBHm_Chr6g0311571 RchiOBHm_Chr6g0311581 RchiOBHm_Chr6g0311591
rosa_laevigata	RLG00000010389 RLG00000010390 RLG00000010391 RLG00000010393 RLG00000012788 RLG00000030050
rosa_multiflora	Rmu_sc0003315.1_g000003 Rmu_sc0006781.1_g000009 Rmu_sc0007556.1_g000006 Rmu_sc0018059.1_g000002 Rmu_sc0018059.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323490 Rroxscaffold_7G00157470 Rroxscaffold_7G00157480 Rroxscaffold_7G00157490 Rroxscaffold_7G00185080
rosa_rugosa	Rorug01G0062100 Rorug01G0062300 Rorug06G0158200 Rorug06G0158300 Rorug06G0389800.1 Rorug06G0389900
rosa_samantha	Rh1AG079400 Rh1BG063600 Rh1CG077000 Rh1DG083500 Rh6AG504700 Rh6AG504800 Rh6AG504900 Rh6BG272400 Rh6BG515600 Rh6BG515700 Rh6BG515800 Rh6CG521400 Rh6CG521600 Rh6DG266500 Rh6DG507300 Rh6DG507400
rosa_wichuraiana	Rw1G006300 Rw6G018310 Rw6G023400 Rw6G043960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	98
AciI	CCGC	1 cut(s)	499
AclWI	GGATC	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	140
AfaI	GTAC	3 cut(s)	23, 88, 477
AfeI	AGCGCT	1 cut(s)	414
AgsI	TTSAA	5 cut(s)	102, 212, 230, 265, 494
AluBI	AGCT	3 cut(s)	113, 269, 467
AluI	AGCT	3 cut(s)	113, 269, 467
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	160
AlwNI	CAGNNNCTG	2 cut(s)	90, 113
Aor51HI	AGCGCT	1 cut(s)	414
AoxI	GGCC	2 cut(s)	33, 40
ApeKI	GCWGC	3 cut(s)	361, 440, 467
ApoI	RAATTY	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	72
AspLEI	GCGC	2 cut(s)	408, 415
BbvI	GCAGC	3 cut(s)	373, 427, 454
BccI	CCATC	1 cut(s)	481
BceAI	ACGGC	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	2 cut(s)	270, 410
BfoI	RGCGCY	2 cut(s)	409, 416
BfuAI	ACCTGC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	3 cut(s)	362, 441, 468
BlsI	GCNGC	3 cut(s)	363, 442, 469
Bse1I	ACTGG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	2 cut(s)	176, 449
BseXI	GCAGC	3 cut(s)	373, 427, 454
BsgI	GTGCAG	1 cut(s)	76
BshFI	GGCC	2 cut(s)	35, 42
BsmAI	GTCTC	1 cut(s)	267
BsnI	GGCC	2 cut(s)	35, 42
Bsp143I	GATC	2 cut(s)	70, 152
BspACI	CCGC	1 cut(s)	499
BspANI	GGCC	2 cut(s)	35, 42
BspMI	ACCTGC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	52
BssMI	GATC	2 cut(s)	70, 152
Bst4CI	ACNGT	2 cut(s)	86, 303
Bst6I	CTCTTC	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	444, 513
BstH2I	RGCGCY	2 cut(s)	409, 416
BstHHI	GCGC	2 cut(s)	408, 415
BstKTI	GATC	2 cut(s)	73, 155
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	70, 152
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 213, 266, 412
BstV1I	GCAGC	3 cut(s)	373, 427, 454
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	35, 42
BveI	ACCTGC	1 cut(s)	98
CaiI	CAGNNNCTG	2 cut(s)	90, 113
CfoI	GCGC	2 cut(s)	408, 415
Csp6I	GTAC	3 cut(s)	22, 87, 476
CviAII	CATG	1 cut(s)	344
CviJI	RGCY	9 cut(s)	35, 42, 106, 113, 128, 269, 342, 440, 467
CviKI_1	RGCY	9 cut(s)	35, 42, 106, 113, 128, 269, 342, 440, 467
CviQI	GTAC	3 cut(s)	22, 87, 476
DdeI	CTNAG	2 cut(s)	444, 513
DpnI	GATC	2 cut(s)	72, 154
DpnII	GATC	2 cut(s)	70, 152
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco47III	AGCGCT	1 cut(s)	414
FaeI	CATG	1 cut(s)	347
FaiI	YATR	5 cut(s)	123, 345, 354, 356, 419
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	1 cut(s)	343
FauI	CCCGC	1 cut(s)	506
Fnu4HI	GCNGC	3 cut(s)	362, 441, 468
Fsp4HI	GCNGC	3 cut(s)	362, 441, 468
FspBI	CTAG	2 cut(s)	270, 410
GlaI	GCGC	2 cut(s)	407, 414
GluI	GCNGC	3 cut(s)	362, 441, 468
HaeII	RGCGCY	2 cut(s)	409, 416
HaeIII	GGCC	2 cut(s)	35, 42
HhaI	GCGC	2 cut(s)	408, 415
Hin1II	CATG	1 cut(s)	347
Hin6I	GCGC	2 cut(s)	406, 413
HinP1I	GCGC	2 cut(s)	406, 413
HincII	GTYRAC	1 cut(s)	47
HindII	GTYRAC	1 cut(s)	47
HinfI	GANTC	2 cut(s)	182, 226
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	2 cut(s)	157, 187
Hpy8I	GTNNAC	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	143, 206, 250
HpyCH4III	ACNGT	2 cut(s)	86, 303
HpyCH4V	TGCA	2 cut(s)	93, 146
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 213, 266, 412
HpyF3I	CTNAG	2 cut(s)	444, 513
Hsp92II	CATG	1 cut(s)	347
HspAI	GCGC	2 cut(s)	406, 413
Kzo9I	GATC	2 cut(s)	70, 152
LpnPI	CCDG	5 cut(s)	65, 103, 120, 350, 356
Lsp1109I	GCAGC	3 cut(s)	373, 427, 454
MaeI	CTAG	2 cut(s)	270, 410
MalI	GATC	2 cut(s)	72, 154
MboI	GATC	2 cut(s)	70, 152
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	2 cut(s)	140, 238
MnlI	CCTC	4 cut(s)	154, 157, 427, 430
MroXI	GAANNNNTTC	1 cut(s)	72
MwoI	GCNNNNNNNGC	4 cut(s)	48, 213, 266, 412
NdeII	GATC	2 cut(s)	70, 152
NlaIII	CATG	1 cut(s)	347
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	182, 226
PkrI	GCNGC	3 cut(s)	363, 442, 469
PstNI	CAGNNNCTG	2 cut(s)	90, 113
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	3 cut(s)	23, 88, 477
RsaNI	GTAC	3 cut(s)	22, 87, 476
SatI	GCNGC	3 cut(s)	362, 441, 468
Sau3AI	GATC	2 cut(s)	70, 152
SetI	ASST	6 cut(s)	92, 98, 115, 271, 469, 514
Sse9I	AATT	2 cut(s)	140, 238
SsiI	CCGC	1 cut(s)	499
SspMI	CTAG	2 cut(s)	270, 410
TaaI	ACNGT	2 cut(s)	86, 303
TasI	AATT	2 cut(s)	140, 238
TatI	WGTACW	2 cut(s)	21, 475
TfiI	GAWTC	2 cut(s)	182, 226
TseI	GCWGC	3 cut(s)	361, 440, 467
TspDTI	ATGAA	3 cut(s)	138, 147, 371
XapI	RAATTY	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	2 cut(s)	270, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.