Rw6G043960

Mechanosensitive ion channel protein 10-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
67097918 .. 67100475
2558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G043960.1

Sequence Viewer

Length: 1710 bp
ATGAACAAGAGAATCTTGACTGAGTTATTTGTTTTCCTGTGCATTTTGGGTTGTTTAGTGGCTAGCTTGACTGTGGAGAAACTAGAGAATTATATGGTTTGGGGCTTGGAGATTTGGAAATGGTGTGTGCTTGTCATGGTGATATTCAGTGGCATGTTGGTTACCAATTGGGTTATGCATTTGATAGTTTTTCTGATCGAGTGCAATTTTTTGCTTCGGAAGAAGGTTTTGTATTTTGTTCATGGAATGAAGAAGAGTGTTCAGGTTTTCTTGTGGTTGTCTCTGGTTCTTCTCACATGGCTACTGTTGTTCAATCGTGGGGTTAAGCGGTCAAAGACTACCACCATGATTTTAAATTATGTTACATGGACTATTGTCTCACTTCTCATTGGGGCATTTTTATGGTTGTTAAAAACATTGTTGCTTAAGATCTTAGCATCTAGTTTCCATGTGAATACCTTCTTTGATAGAATTCAAGAATCAATCTTCCATCAGTACGTGCTTCAGACACTTTCGGGGCATCCGCTCATGGAGGAGGCTGATAGGAACGGTGGGAAATCACCGAGCACTAGCAAACTGAGTTACAGAGCGACAAAGAAGGCAAAGGCTGGAAAGGAAAAAGAGGTCATTGACATGACAAAGCTTCAACAGATAAAGCAAGAGAAGGTTTCTTCTTGGACCATGAAGGTCTTGGTGGATGCAGTAACTAGTTCAGGGCTGTCCACGATCTCCCATACATTGGATGAGATGGAGGGTCAGAATGAGCAGAGAGATAAGGAGATTACCAGTGAGATGGAAGCAACTGCTGCTGCCTATGACATATTCCTTAACGTTGCTCCGCTGGGTGCTAATTACATTGAGGAGTGGGACCTCTTGAGGTTCATGATCGAGGAAGAAGTGGAGCTTGTGTGGCCGCTAATTGACGTAAAAAAGACTGGACAAGTTGATAGAAAAACTCTAACAGAGTGGGTGGTGAAGGTCTACAATGGTCGCAAAGCATTAGCTCATTCATTAACCGACACCAAAACAGCCGTAAAACAATTGAACAAACTTGTGACTAGTGTCCTGTTTATTATTACCATTATAGTGTGGCTTCTGTTGATGGAAATTGCAACTACAAAAGTACTTGTCTTCCTCTCATCACAGCTCGTAGTGGCAGCTTTTATGTTTGGAAACACTTGCAAGACTATATTCGAAGCTATTATCTTCGTTTTTGTAATGCATCCATATGACGTTGGTGACCGCTGCGTTATTGATGGCGTTCAGTTAATGGTTGAGGAGATGAACATCTTAACTACAGTCTTCTTAAAACTCAATCAAGAAAAGGTATACTATCCCAATTCAGTTTTATCCACAAAACCGATCAGCAATTATTACAGAAGTTCAAATATGGGTGATAATGTGGAGTTCTCAATTGCTTTTACTACACCAGTGAAGAAGATAGGCGAGCTGAGAGAGAAAGTAAAGGAGTATGTGGAGGGGAATCCGACGCTTTGGCATCCAAACCACCAAATTGTGGTGCTTGAGATCGAAAATGTGAATAAGTTAAAGCTGGCACTCTACTTTAGTCACACGATGAACTTTCAAGACTGGGGAGAAAAGCAAAAGCGGAGAAGTGAAATGGTCATGGCATTGAAGAAATGTTTGGAGGACCTACACATTACATACTATCTGCTGCCCCTAGAAGTTCGTCTCACTGAAACTAAATGA

Protein Analysis

569

Amino Acids

65.66

Weight (kDa)

8.66

Isoelectric Point (pI)

33.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MS_channel_2nd PF00924 402 - 459 9.2e-09 Mechanosensitive ion channel, beta-domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 739, 1516
AccBSI CCGCTC 1 cut(s) 526
AccI GTMKAC 2 cut(s) 981, 1329
AciI CCGC 6 cut(s) 328, 524, 839, 914, 1243, 1609
AclI AACGTT 1 cut(s) 831
AcoI YGGCCR 1 cut(s) 911
AcsI RAATTY 1 cut(s) 471
AcuI CTGAAG 1 cut(s) 488
AfaI GTAC 2 cut(s) 497, 1125
AfiI CCNNNNNNNGG 2 cut(s) 739, 1516
AflII CTTAAG 1 cut(s) 425
AgsI TTSAA 7 cut(s) 313, 476, 647, 1045, 1386, 1586, 1636
AhlI ACTAGT 2 cut(s) 707, 1058
AjuI GAANNNNNNNTTGG 2 cut(s) 1628, 1660
AluBI AGCT 9 cut(s) 66, 643, 904, 1004, 1147, 1160, 1199, 1450, 1552
AluI AGCT 9 cut(s) 66, 643, 904, 1004, 1147, 1160, 1199, 1450, 1552
Alw21I GWGCWC 1 cut(s) 569
Alw26I GTCTC 3 cut(s) 285, 382, 1697
AoxI GGCC 1 cut(s) 911
ApeKI GCWGC 5 cut(s) 806, 809, 1157, 1245, 1675
ApoI RAATTY 1 cut(s) 471
Asp700I GAANNNNTTC 1 cut(s) 458
AspS9I GGNCC 3 cut(s) 678, 868, 1651
AsuHPI GGTGA 5 cut(s) 151, 552, 985, 1250, 1406
AsuII TTCGAA 1 cut(s) 1194
AsuNHI GCTAGC 1 cut(s) 62
AvaII GGWCC 3 cut(s) 678, 868, 1651
BbsI GAAGAC 2 cut(s) 1123, 1294
Bbv12I GWGCWC 1 cut(s) 569
BbvI GCAGC 5 cut(s) 793, 796, 1169, 1232, 1662
BccI CCATC 5 cut(s) 498, 742, 787, 1096, 1250
BceAI ACGGC 1 cut(s) 1016
BcoDI GTCTC 3 cut(s) 285, 382, 1697
BcuI ACTAGT 2 cut(s) 707, 1058
BfaI CTAG 7 cut(s) 63, 83, 441, 570, 708, 1059, 1682
BfmI CTRYAG 1 cut(s) 1296
BfrI CTTAAG 1 cut(s) 425
BglII AGATCT 1 cut(s) 429
BisI GCNGC 6 cut(s) 807, 810, 914, 1158, 1246, 1676
BlsI GCNGC 6 cut(s) 808, 811, 915, 1159, 1247, 1677
BmcAI AGTACT 1 cut(s) 1125
Bme18I GGWCC 3 cut(s) 678, 868, 1651
BmgT120I GGNCC 3 cut(s) 678, 868, 1651
BmiI GGNNCC 1 cut(s) 869
BmrI ACTGGG 1 cut(s) 1600
BmsI GCATC 5 cut(s) 446, 529, 688, 1231, 1507
BmtI GCTAGC 1 cut(s) 66
BmuI ACTGGG 1 cut(s) 1600
BoxI GACNNNNGTC 2 cut(s) 374, 1061
BpiI GAAGAC 2 cut(s) 1123, 1294
Bpu14I TTCGAA 1 cut(s) 1194
BpuEI CTTGAG 2 cut(s) 895, 1544
BsaAI YACGTR 1 cut(s) 499
BsaBI GATNNNNATC 1 cut(s) 1286
BsaXI ACNNNNNCTCC 2 cut(s) 893, 923
Bsc4I CCNNNNNNNGG 2 cut(s) 739, 1516
Bse1I ACTGG 4 cut(s) 786, 940, 1430, 1595
Bse8I GATNNNNATC 1 cut(s) 1286
BseGI GGATG 5 cut(s) 520, 703, 748, 1222, 1498
BseJI GATNNNNATC 1 cut(s) 1286
BseLI CCNNNNNNNGG 2 cut(s) 739, 1516
BseMII CTCAG 3 cut(s) 12, 569, 1442
BseNI ACTGG 4 cut(s) 786, 940, 1430, 1595
BseRI GAGGAG 3 cut(s) 548, 875, 1292
BseXI GCAGC 5 cut(s) 793, 796, 1169, 1232, 1662
BseYI CCCAGC 1 cut(s) 841
BshFI GGCC 1 cut(s) 913
BsiHKAI GWGCWC 1 cut(s) 569
BslFI GGGAC 1 cut(s) 881
BslI CCNNNNNNNGG 2 cut(s) 739, 1516
BsmAI GTCTC 3 cut(s) 285, 382, 1697
BsmBI CGTCTC 1 cut(s) 1697
BsmFI GGGAC 1 cut(s) 881
BsnI GGCC 1 cut(s) 913
Bsp119I TTCGAA 1 cut(s) 1194
Bsp1286I GDGCHC 1 cut(s) 569
Bsp143I GATC 6 cut(s) 195, 429, 726, 885, 1362, 1527
BspACI CCGC 6 cut(s) 328, 524, 839, 914, 1243, 1609
BspANI GGCC 1 cut(s) 913
BspCNI CTCAG 3 cut(s) 13, 570, 1443
BspHI TCATGA 1 cut(s) 882
BspLI GGNNCC 1 cut(s) 869
BspOI GCTAGC 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 1194
BspTI CTTAAG 1 cut(s) 425
BsrBI CCGCTC 1 cut(s) 526
BsrI ACTGG 4 cut(s) 786, 940, 1430, 1595
BssMI GATC 6 cut(s) 195, 429, 726, 885, 1362, 1527
BssNAI GTATAC 1 cut(s) 1330
Bst1107I GTATAC 1 cut(s) 1330
Bst4CI ACNGT 4 cut(s) 73, 306, 551, 1300
Bst6I CTCTTC 1 cut(s) 248
BstAFI CTTAAG 1 cut(s) 425
BstAPI GCANNNNNTGC 1 cut(s) 806
BstBAI YACGTR 1 cut(s) 499
BstBI TTCGAA 1 cut(s) 1194
BstC8I GCNNGC 3 cut(s) 64, 1448, 1554
BstDEI CTNAG 4 cut(s) 21, 433, 578, 1451
BstEII GGTNACC 2 cut(s) 160, 1238
BstF5I GGATG 5 cut(s) 520, 703, 748, 1222, 1498
BstKTI GATC 6 cut(s) 198, 432, 729, 888, 1365, 1530
BstMAI GTCTC 3 cut(s) 285, 382, 1697
BstMBI GATC 6 cut(s) 195, 429, 726, 885, 1362, 1527
BstMWI GCNNNNNNNGC 2 cut(s) 806, 910
BstNSI RCATGY 1 cut(s) 157
BstPAI GACNNNNGTC 2 cut(s) 374, 1061
BstPI GGTNACC 2 cut(s) 160, 1238
BstSFI CTRYAG 1 cut(s) 1296
BstV1I GCAGC 5 cut(s) 793, 796, 1169, 1232, 1662
BstV2I GAAGAC 2 cut(s) 1123, 1294
BstX2I RGATCY 1 cut(s) 429
BstXI CCANNNNNNTGG 1 cut(s) 793
BstYI RGATCY 1 cut(s) 429
BstZ17I GTATAC 1 cut(s) 1330
BsuRI GGCC 1 cut(s) 913
BtsCI GGATG 5 cut(s) 520, 703, 748, 1222, 1498
BtsIMutI CAGTG 4 cut(s) 154, 793, 1437, 1695
Cac8I GCNNGC 3 cut(s) 64, 1448, 1554
CciI TCATGA 1 cut(s) 882
Cfr13I GGNCC 3 cut(s) 678, 868, 1651
CseI GACGC 1 cut(s) 1498
Csp6I GTAC 2 cut(s) 496, 1124
CviQI GTAC 2 cut(s) 496, 1124
DdeI CTNAG 4 cut(s) 21, 433, 578, 1451
DpnI GATC 6 cut(s) 197, 431, 728, 887, 1364, 1529
DpnII GATC 6 cut(s) 195, 429, 726, 885, 1362, 1527
DraI TTTAAA 1 cut(s) 354
EaeI YGGCCR 1 cut(s) 911
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco47I GGWCC 3 cut(s) 678, 868, 1651
Eco57I CTGAAG 1 cut(s) 488
Eco91I GGTNACC 2 cut(s) 160, 1238
EcoO109I RGGNCCY 2 cut(s) 868, 1651
EcoO65I GGTNACC 2 cut(s) 160, 1238
EcoRI GAATTC 1 cut(s) 471
EcoT22I ATGCAT 2 cut(s) 180, 1224
Esp3I CGTCTC 1 cut(s) 1697
FalI AAGNNNNNCTT 3 cut(s) 31, 888, 920
FaqI GGGAC 1 cut(s) 881
FauNDI CATATG 1 cut(s) 1228
FblI GTMKAC 2 cut(s) 981, 1329
Fnu4HI GCNGC 6 cut(s) 807, 810, 914, 1158, 1246, 1676
FokI GGATG 5 cut(s) 507, 710, 755, 1209, 1485
Fsp4HI GCNGC 6 cut(s) 807, 810, 914, 1158, 1246, 1676
FspBI CTAG 7 cut(s) 63, 83, 441, 570, 708, 1059, 1682
GluI GCNGC 6 cut(s) 807, 810, 914, 1158, 1246, 1676
GsaI CCCAGC 1 cut(s) 845
HaeIII GGCC 1 cut(s) 913
HgaI GACGC 1 cut(s) 1498
HindIII AAGCTT 1 cut(s) 641
HinfI GANTC 3 cut(s) 12, 479, 1483
HphI GGTGA 5 cut(s) 151, 552, 985, 1250, 1406
Hpy166II GTNNAC 3 cut(s) 723, 982, 1330
Hpy188I TCNGA 5 cut(s) 195, 219, 507, 759, 1488
Hpy188III TCNNGA 6 cut(s) 16, 476, 874, 883, 1319, 1586
Hpy8I GTNNAC 3 cut(s) 723, 982, 1330
Hpy99I CGWCG 1 cut(s) 1492
HpyAV CCTTC 6 cut(s) 217, 469, 592, 658, 679, 970
HpyCH4III ACNGT 4 cut(s) 73, 306, 551, 1300
HpyCH4IV ACGT 4 cut(s) 498, 831, 924, 1233
HpyCH4V TGCA 7 cut(s) 42, 178, 204, 701, 1112, 1182, 1222
HpyF10VI GCNNNNNNNGC 2 cut(s) 806, 910
HpyF3I CTNAG 4 cut(s) 21, 433, 578, 1451
HpySE526I ACGT 4 cut(s) 498, 831, 924, 1233
Kzo9I GATC 6 cut(s) 195, 429, 726, 885, 1362, 1527
LmnI GCTCC 2 cut(s) 841, 901
Lsp1109I GCAGC 5 cut(s) 793, 796, 1169, 1232, 1662
LweI GCATC 5 cut(s) 446, 529, 688, 1231, 1507
MaeI CTAG 7 cut(s) 63, 83, 441, 570, 708, 1059, 1682
MaeII ACGT 4 cut(s) 498, 831, 924, 1233
MaeIII GTNAC 7 cut(s) 160, 361, 581, 703, 1054, 1238, 1568
MalI GATC 6 cut(s) 197, 431, 728, 887, 1364, 1529
MbiI CCGCTC 1 cut(s) 526
MboI GATC 6 cut(s) 195, 429, 726, 885, 1362, 1527
MfeI CAATTG 3 cut(s) 166, 1040, 1413
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 1 cut(s) 569
MmeI TCCRAC 1 cut(s) 1511
Mph1103I ATGCAT 2 cut(s) 180, 1224
MroXI GAANNNNTTC 1 cut(s) 458
MslI CAYNNNNRTG 4 cut(s) 400, 632, 1085, 1227
MspA1I CMGCKG 2 cut(s) 841, 1245
MspCI CTTAAG 1 cut(s) 425
MunI CAATTG 3 cut(s) 166, 1040, 1413
MwoI GCNNNNNNNGC 2 cut(s) 806, 910
NdeI CATATG 1 cut(s) 1228
NdeII GATC 6 cut(s) 195, 429, 726, 885, 1362, 1527
NheI GCTAGC 1 cut(s) 62
NlaIV GGNNCC 1 cut(s) 869
NmuCI GTSAC 3 cut(s) 1054, 1238, 1568
NsiI ATGCAT 2 cut(s) 180, 1224
NspI RCATGY 1 cut(s) 157
NspV TTCGAA 1 cut(s) 1194
PagI TCATGA 1 cut(s) 882
PdmI GAANNNNTTC 1 cut(s) 458
PfeI GAWTC 3 cut(s) 12, 479, 1483
PflMI CCANNNNNTGG 2 cut(s) 739, 1516
PkrI GCNGC 6 cut(s) 808, 811, 915, 1159, 1247, 1677
Ppu21I YACGTR 1 cut(s) 499
PpuMI RGGWCCY 2 cut(s) 868, 1651
PshAI GACNNNNGTC 2 cut(s) 374, 1061
Psp1406I AACGTT 1 cut(s) 831
Psp5II RGGWCCY 2 cut(s) 868, 1651
PspEI GGTNACC 2 cut(s) 160, 1238
PspFI CCCAGC 1 cut(s) 841
PspN4I GGNNCC 1 cut(s) 869
PspPI GGNCC 3 cut(s) 678, 868, 1651
PspPPI RGGWCCY 2 cut(s) 868, 1651
PsuI RGATCY 1 cut(s) 429
RsaI GTAC 2 cut(s) 497, 1125
RsaNI GTAC 2 cut(s) 496, 1124
RseI CAYNNNNRTG 4 cut(s) 400, 632, 1085, 1227
SatI GCNGC 6 cut(s) 807, 810, 914, 1158, 1246, 1676
Sau3AI GATC 6 cut(s) 195, 429, 726, 885, 1362, 1527
Sau96I GGNCC 3 cut(s) 678, 868, 1651
ScaI AGTACT 1 cut(s) 1125
SduI GDGCHC 1 cut(s) 569
SfaNI GCATC 5 cut(s) 446, 529, 688, 1231, 1507
SfcI CTRYAG 1 cut(s) 1296
SfuI TTCGAA 1 cut(s) 1194
SinI GGWCC 3 cut(s) 678, 868, 1651
SmiMI CAYNNNNRTG 4 cut(s) 400, 632, 1085, 1227
SmlI CTYRAG 3 cut(s) 425, 874, 1523
SmoI CTYRAG 3 cut(s) 425, 874, 1523
SpeI ACTAGT 2 cut(s) 707, 1058
SsiI CCGC 6 cut(s) 328, 524, 839, 914, 1243, 1609
SspMI CTAG 7 cut(s) 63, 83, 441, 570, 708, 1059, 1682
TaaI ACNGT 4 cut(s) 73, 306, 551, 1300
TaiI ACGT 4 cut(s) 501, 834, 927, 1236
TaqI TCGA 4 cut(s) 198, 888, 1194, 1530
TatI WGTACW 1 cut(s) 1123
TauI GCSGC 1 cut(s) 916
TfiI GAWTC 3 cut(s) 12, 479, 1483
TscAI CASTG 4 cut(s) 154, 793, 1437, 1702
TseFI GTSAC 3 cut(s) 1054, 1238, 1568
TseI GCWGC 5 cut(s) 806, 809, 1157, 1245, 1675
Tsp45I GTSAC 3 cut(s) 1054, 1238, 1568
TspDTI ATGAA 8 cut(s) 17, 230, 263, 698, 871, 999, 1298, 1592
TspRI CASTG 4 cut(s) 154, 793, 1437, 1702
Van91I CCANNNNNTGG 2 cut(s) 739, 1516
Vha464I CTTAAG 1 cut(s) 425
VpaK11BI GGWCC 3 cut(s) 678, 868, 1651
XapI RAATTY 1 cut(s) 471
XceI RCATGY 1 cut(s) 157
XcmI CCANNNNNNNNNTGG 1 cut(s) 688
XmiI GTMKAC 2 cut(s) 981, 1329
XmnI GAANNNNTTC 1 cut(s) 458
XspI CTAG 7 cut(s) 63, 83, 441, 570, 708, 1059, 1682
ZrmI AGTACT 1 cut(s) 1125
Zsp2I ATGCAT 2 cut(s) 180, 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.