pycom17g08270

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000303
Physical Location & Seq
Reverse (-)
6155960 .. 6156428
469 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 408 bp
ATGGCAACACCCACTCACCATTTTCTTCATCAAATCAAAATTCAAACACATCAAACAAACATCAGTTTTCATTACTTGCAATTTTCCATCAAGAGTTTTGTGTTAAAAATATATACAGAAGAAAATATGACTATTTCATCAGCAGCAGCAAGGAGAGGTTGGGTAGTGGCAGCAAGTGTTGGAGTTGTGGAGGCCTTGAAAGACCAGGGGATCTGCAGGTGGAATTATACTATGAGATTACTGCAGCAGCATGCCAAGAACCAACTTGGGTCGTTTTCTCAGGCCAACAAGTTCTCTTCCTCATGTTATGCTTTGGTCTCAACTAAAGTTAGACAAGATGAGAAGATAAAGCAGTCTGAGGAGTCTCTCAGGAAAGTCATGTACCTCAGCTGCTGGGGTCCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

136

Amino Acids

15.48

Weight (kDa)

9.64

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 56 - 134 6.9e-34 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 207
Acc36I ACCTGC 1 cut(s) 207
AclWI GGATC 1 cut(s) 218
AcsI RAATTY 1 cut(s) 39
AfaI GTAC 1 cut(s) 383
AgsI TTSAA 2 cut(s) 44, 199
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 1 cut(s) 390
AluI AGCT 1 cut(s) 390
Alw26I GTCTC 2 cut(s) 322, 369
AlwI GGATC 1 cut(s) 218
AlwNI CAGNNNCTG 1 cut(s) 393
AoxI GGCC 2 cut(s) 192, 282
ApeKI GCWGC 6 cut(s) 143, 146, 170, 244, 247, 390
ApoI RAATTY 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 398
AsuHPI GGTGA 1 cut(s) 8
AvaII GGWCC 1 cut(s) 398
BbvCI CCTCAGC 1 cut(s) 386
BbvI GCAGC 6 cut(s) 155, 158, 182, 256, 259, 377
BccI CCATC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 2 cut(s) 322, 369
BfmI CTRYAG 2 cut(s) 214, 242
BfuAI ACCTGC 1 cut(s) 207
BisI GCNGC 6 cut(s) 144, 147, 171, 245, 248, 391
BlsI GCNGC 6 cut(s) 145, 148, 172, 246, 249, 392
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 2 cut(s) 399, 400
BmrFI CCNGG 1 cut(s) 206
Bpu10I CCTNAGC 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 322
BsaJI CCNNGG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 205
BseMII CTCAG 4 cut(s) 293, 348, 382, 400
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 6 cut(s) 155, 158, 182, 256, 259, 377
BseYI CCCAGC 1 cut(s) 393
BshFI GGCC 2 cut(s) 194, 284
BslFI GGGAC 1 cut(s) 384
BsmAI GTCTC 2 cut(s) 322, 369
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 2 cut(s) 194, 284
Bso31I GGTCTC 1 cut(s) 322
Bsp143I GATC 1 cut(s) 210
BspANI GGCC 2 cut(s) 194, 284
BspCNI CTCAG 4 cut(s) 292, 349, 381, 399
BspLI GGNNCC 2 cut(s) 399, 400
BspMAI CTGCAG 2 cut(s) 218, 246
BspMI ACCTGC 1 cut(s) 207
BspPI GGATC 1 cut(s) 218
BspTNI GGTCTC 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 301
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 4 cut(s) 279, 357, 368, 386
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 2 cut(s) 322, 369
BstMBI GATC 1 cut(s) 210
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 2 cut(s) 214, 242
BstV1I GCAGC 6 cut(s) 155, 158, 182, 256, 259, 377
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
BsuRI GGCC 2 cut(s) 194, 284
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 252
CaiI CAGNNNCTG 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 398
Csp6I GTAC 1 cut(s) 382
CviAII CATG 3 cut(s) 251, 303, 379
CviJI RGCY 3 cut(s) 194, 284, 390
CviKI_1 RGCY 3 cut(s) 194, 284, 390
CviQI GTAC 1 cut(s) 382
DdeI CTNAG 4 cut(s) 279, 357, 368, 386
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
Eco147I AGGCCT 1 cut(s) 194
Eco31I GGTCTC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 204
FaeI CATG 3 cut(s) 254, 306, 382
FaiI YATR 9 cut(s) 112, 114, 128, 228, 233, 252, 304, 309, 380
FaqI GGGAC 1 cut(s) 384
FatI CATG 3 cut(s) 250, 302, 378
Fnu4HI GCNGC 6 cut(s) 144, 147, 171, 245, 248, 391
Fsp4HI GCNGC 6 cut(s) 144, 147, 171, 245, 248, 391
GluI GCNGC 6 cut(s) 144, 147, 171, 245, 248, 391
GsaI CCCAGC 1 cut(s) 397
HaeIII GGCC 2 cut(s) 194, 284
Hin1II CATG 3 cut(s) 254, 306, 382
HinfI GANTC 1 cut(s) 362
HphI GGTGA 1 cut(s) 8
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 2 cut(s) 91, 370
HpyCH4V TGCA 3 cut(s) 79, 216, 244
HpyF3I CTNAG 4 cut(s) 279, 357, 368, 386
Hsp92II CATG 3 cut(s) 254, 306, 382
KflI GGGWCCC 1 cut(s) 398
Kzo9I GATC 1 cut(s) 210
LpnPI CCDG 6 cut(s) 191, 202, 218, 266, 355, 379
Lsp1109I GCAGC 6 cut(s) 155, 158, 182, 256, 259, 377
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MboII GAAGA 4 cut(s) 17, 131, 288, 355
MfeI CAATTG 1 cut(s) 403
MflI RGATCY 1 cut(s) 210
MluCI AATT 4 cut(s) 39, 80, 223, 403
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 5 cut(s) 149, 184, 310, 352, 395
MseI TTAA 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 390
MspR9I CCNGG 1 cut(s) 206
MunI CAATTG 1 cut(s) 403
MvaI CCWGG 1 cut(s) 206
NdeII GATC 1 cut(s) 210
NlaIII CATG 3 cut(s) 254, 306, 382
NlaIV GGNNCC 2 cut(s) 399, 400
NspI RCATGY 1 cut(s) 254
PaeI GCATGC 1 cut(s) 254
PaqCI CACCTGC 1 cut(s) 207
PceI AGGCCT 1 cut(s) 194
PkrI GCNGC 6 cut(s) 145, 148, 172, 246, 249, 392
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PpuMI RGGWCCY 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 393
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 399, 400
PspPI GGNCC 1 cut(s) 398
PspPPI RGGWCCY 1 cut(s) 398
PstI CTGCAG 2 cut(s) 218, 246
PstNI CAGNNNCTG 1 cut(s) 393
PsuI RGATCY 1 cut(s) 210
PvuII CAGCTG 1 cut(s) 390
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 6 cut(s) 144, 147, 171, 245, 248, 391
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 206
SetI ASST 4 cut(s) 160, 221, 387, 392
SfcI CTRYAG 2 cut(s) 214, 242
SinI GGWCC 1 cut(s) 398
SphI GCATGC 1 cut(s) 254
Sse9I AATT 4 cut(s) 39, 80, 223, 403
SseBI AGGCCT 1 cut(s) 194
StuI AGGCCT 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 204
TasI AATT 4 cut(s) 39, 80, 223, 403
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TseI GCWGC 6 cut(s) 143, 146, 170, 244, 247, 390
TspDTI ATGAA 3 cut(s) 17, 59, 126
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 1 cut(s) 39
XceI RCATGY 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.