pycom17g08290

Wound induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000303
Physical Location & Seq
Reverse (-)
6167187 .. 6167456
270 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGAGTTCAAGTGCAAGCAAGGCTATAGTGGCAGCAAGTGTTGGAGTTGTGGAGGCACTCAAGGACCAAGGGATTTGCAGATGGAACTCTGCTTTGAGATATGCAGGCCAACAAGCCAAGAGCCAAGTGAGGTCCTTTTCTCAGGCCAAAAGCAAGCTCTCTTCTCCTTCTTCTTCAGCTCTGAGTAAAGTGAGAGATGAGAAGCTCAAGAAATCAGAGGAGTCTTTGAGGACAGTCATGTTTTTGAGCTGCTGGGGTCCCAACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

90

Amino Acids

9.58

Weight (kDa)

10.02

Isoelectric Point (pI)

62.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 10 - 87 2.4e-32 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 159
AgsI TTSAA 1 cut(s) 9
AluBI AGCT 4 cut(s) 157, 179, 205, 249
AluI AGCT 4 cut(s) 157, 179, 205, 249
AoxI GGCC 2 cut(s) 106, 144
ApeKI GCWGC 2 cut(s) 32, 249
AspS9I GGNCC 3 cut(s) 64, 132, 257
AvaII GGWCC 3 cut(s) 64, 132, 257
BbvI GCAGC 2 cut(s) 44, 236
BccI CCATC 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 2 cut(s) 33, 250
BlsI GCNGC 2 cut(s) 34, 251
Bme18I GGWCC 3 cut(s) 64, 132, 257
BmgT120I GGNCC 3 cut(s) 64, 132, 257
BmiI GGNNCC 2 cut(s) 258, 259
BpuEI CTTGAG 2 cut(s) 44, 191
BsaJI CCNNGG 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 67
BseMII CTCAG 2 cut(s) 155, 173
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 2 cut(s) 44, 236
BseYI CCCAGC 1 cut(s) 252
BshFI GGCC 2 cut(s) 108, 146
BslFI GGGAC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 2 cut(s) 108, 146
BspANI GGCC 2 cut(s) 108, 146
BspCNI CTCAG 2 cut(s) 154, 174
BspLI GGNNCC 2 cut(s) 258, 259
BssECI CCNNGG 1 cut(s) 67
BssT1I CCWWGG 1 cut(s) 67
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 166
BstC8I GCNNGC 3 cut(s) 16, 106, 155
BstDEI CTNAG 2 cut(s) 141, 182
BstMWI GCNNNNNNNGC 2 cut(s) 20, 29
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 44, 236
BsuRI GGCC 2 cut(s) 108, 146
Cac8I GCNNGC 3 cut(s) 16, 106, 155
Cfr13I GGNCC 3 cut(s) 64, 132, 257
CviAII CATG 1 cut(s) 238
CviJI RGCY 9 cut(s) 23, 108, 116, 123, 146, 157, 179, 205, 249
CviKI_1 RGCY 9 cut(s) 23, 108, 116, 123, 146, 157, 179, 205, 249
DdeI CTNAG 2 cut(s) 141, 182
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 67
Eco47I GGWCC 3 cut(s) 64, 132, 257
Eco57I CTGAAG 1 cut(s) 159
EcoO109I RGGNCCY 2 cut(s) 132, 257
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 1 cut(s) 241
FaiI YATR 3 cut(s) 26, 102, 239
FaqI GGGAC 1 cut(s) 243
FatI CATG 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 33, 250
Fsp4HI GCNGC 2 cut(s) 33, 250
GluI GCNGC 2 cut(s) 33, 250
GsaI CCCAGC 1 cut(s) 256
HaeIII GGCC 2 cut(s) 108, 146
Hin1II CATG 1 cut(s) 241
HinfI GANTC 1 cut(s) 221
Hpy188I TCNGA 2 cut(s) 183, 217
Hpy188III TCNNGA 1 cut(s) 208
HpyAV CCTTC 1 cut(s) 177
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 14, 78, 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 29
HpyF3I CTNAG 2 cut(s) 141, 182
Hsp92II CATG 1 cut(s) 241
KflI GGGWCCC 1 cut(s) 257
LpnPI CCDG 3 cut(s) 90, 128, 238
Lsp1109I GCAGC 2 cut(s) 44, 236
MboII GAAGA 3 cut(s) 153, 162, 165
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 4 cut(s) 46, 123, 211, 222
MwoI GCNNNNNNNGC 2 cut(s) 20, 29
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 2 cut(s) 258, 259
PkrI GCNGC 2 cut(s) 34, 251
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PpuMI RGGWCCY 2 cut(s) 132, 257
Psp5II RGGWCCY 2 cut(s) 132, 257
PspFI CCCAGC 1 cut(s) 252
PspN4I GGNNCC 2 cut(s) 258, 259
PspPI GGNCC 3 cut(s) 64, 132, 257
PspPPI RGGWCCY 2 cut(s) 132, 257
SatI GCNGC 2 cut(s) 33, 250
Sau96I GGNCC 3 cut(s) 64, 132, 257
SchI GAGTC 1 cut(s) 230
SetI ASST 5 cut(s) 134, 159, 181, 207, 251
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 3 cut(s) 64, 132, 257
SmlI CTYRAG 2 cut(s) 59, 206
SmoI CTYRAG 2 cut(s) 59, 206
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 235
TseI GCWGC 2 cut(s) 32, 249
VpaK11BI GGWCC 3 cut(s) 64, 132, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.