pycom17g08310

Wound induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000303
Physical Location & Seq
Reverse (-)
6169119 .. 6169671
553 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 462 bp
ATGGTTTTTATAAGCAAAACCGTATGCTCATTTGTAATCCAGTGGGCAGTGTGTGTCATTTCTTCCACCAGCCCGCCGTTTGTAATCCCCCTATTTAATGAGCACTTGGTGCTCATCTTCTTCATCAAACACTTAAAACATTCACAATCACTACTACAGGAGTTCAGAAGATCAAAGAGAAAAGAAATCATGAGTTCATCAAGTGCGAGCAAGGCTATAGTGGCAGCAAGTGTTGGAGTTGTAGAGGCACTCAAGGACCAAGGGATTTGCAGATGGAACTCTGCTTTGAGATATGCAGGCCAACAAGCCAAGAGCCAAGTGAGATCATTTTCTCAGGCCAACAACAAACTTTCGTCTCCTTCTGCGTCGGCTCTGAGTAAAGTGAGAGATGAGAAGCTCAAGAAATCAGAGGAGTCTTTGAGGACGGTCATGTTTTTGAGCTGCTGGGGTCCCAACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

154

Amino Acids

17.05

Weight (kDa)

10.03

Isoelectric Point (pI)

61.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 74 - 151 3e-31 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10265 AT4G10270
fragaria_vesca FvH4_3g21130 FvH4_6g44460 FvH4_6g44461 FvH4_6g44470
malus_domestica MD03G1217500.v1.1 MD09G1096800.v1.1 MD09G1096900.v1.1 MD09G1097000.v1.1 MD09G1097100.v1.1 MD11G1235200.v1.1 MD11G1235300.v1.1 MD17G1085100.v1.1 MD17G1085200.v1.1 MD17G1085300.v1.1 MD17G1085400.v1.1
prunus_persica Prupe.3G228900_v2.0.a1 Prupe.3G229000_v2.0.a1 Prupe.3G229300_v2.0.a1 Prupe.3G229400_v2.0.a1 Prupe.3G229500_v2.0.a1 Prupe.3G229700_v2.0.a1 Prupe.3G229800_v2.0.a1 Prupe.3G229900_v2.0.a1 Prupe.3G230000_v2.0.a1 Prupe.4G191800_v2.0.a1
pyrus_communis pycom03g16710 pycom09g02120 pycom09g02130 pycom1049g00030 pycom11g20680 pycom11g20690 pycom17g08250 pycom17g08260 pycom17g08270 pycom17g08280 pycom17g08290 pycom17g08310
rosa_chinensis RchiOBHm_Chr2g0161421 RchiOBHm_Chr2g0161441 RchiOBHm_Chr2g0161451 RchiOBHm_Chr2g0161461 RchiOBHm_Chr2g0161481 RchiOBHm_Chr2g0161491 RchiOBHm_Chr2g0161501 RchiOBHm_Chr2g0161511 RchiOBHm_Chr5g0036191
rosa_laevigata RLG00000021284 RLG00000021289
rosa_multiflora Rmu_co8259543.1_g000001 Rmu_sc0000247.1_g000003 Rmu_sc0003548.1_g000005 Rmu_sc0003548.1_g000011 Rmu_sc0003548.1_g000014 Rmu_sc0003548.1_g000015 Rmu_sc0003548.1_g000016 Rmu_sc0003548.1_g000017 Rmu_sc0006100.1_g000003 Rmu_sc0013925.1_g000002 Rmu_sc0013925.1_g000003 Rmu_sc0018798.1_g000001 Rmu_sc0040460.1_g000004
rosa_roxburghii Rroxscaffold_1G00044570 Rroxscaffold_2G00088730 Rroxscaffold_2G00088740 Rroxscaffold_2G00088750 Rroxscaffold_2G00088760 Rroxscaffold_2G00088770 Rroxscaffold_2G00088780 Rroxscaffold_2G00088800 Rroxscaffold_2G00088810 Rroxscaffold_2G00088830
rosa_rugosa Rorug02G0489400 Rorug02G0489800 Rorug02G0489900 Rorug02G0490000 Rorug02G0490100 Rorug02G0490200 Rorug02G0490300 Rorug05G0153500
rosa_samantha Rh2AG555700 Rh2AG555900 Rh2AG556100 Rh2AG556200 Rh2AG556300 Rh2AG556400 Rh2AG556500 Rh2BG568900 Rh2BG569100 Rh2BG569200 Rh2BG569400 Rh2BG569600 Rh2BG569700 Rh2BG569800 Rh2BG569900 Rh2CG539600 Rh2CG539800 Rh2CG540200 Rh2CG540300 Rh2CG540400 Rh2DG578500 Rh2DG578700 Rh2DG578800 Rh2DG579000 Rh2DG579100 Rh2DG579200 Rh2DG579300 Rh5BG248200 Rh5CG279600 Rh5DG256500
rosa_wichuraiana Rw2G045960 Rw2G045980 Rw2G046000 Rw2G046010 Rw2G046020 Rw2G046030 Rw2G046040 Rw5G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 11
AciI CCGC 1 cut(s) 74
AdeI CACNNNGTG 1 cut(s) 109
AluBI AGCT 2 cut(s) 397, 441
AluI AGCT 2 cut(s) 397, 441
Alw21I GWGCWC 2 cut(s) 105, 114
Alw26I GTCTC 1 cut(s) 360
AoxI GGCC 2 cut(s) 298, 336
ApeKI GCWGC 2 cut(s) 224, 441
AspS9I GGNCC 2 cut(s) 256, 449
AvaII GGWCC 2 cut(s) 256, 449
Bbv12I GWGCWC 2 cut(s) 105, 114
BbvI GCAGC 2 cut(s) 236, 428
BccI CCATC 1 cut(s) 267
BceAI ACGGC 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 360
BfmI CTRYAG 2 cut(s) 155, 216
BisI GCNGC 2 cut(s) 225, 442
BlsI GCNGC 2 cut(s) 226, 443
Bme18I GGWCC 2 cut(s) 256, 449
BmgT120I GGNCC 2 cut(s) 256, 449
BmiI GGNNCC 2 cut(s) 450, 451
BpuEI CTTGAG 2 cut(s) 236, 383
BsaJI CCNNGG 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 347, 365
BseNI ACTGG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 2 cut(s) 236, 428
BseYI CCCAGC 1 cut(s) 444
BshFI GGCC 2 cut(s) 300, 338
BsiHKAI GWGCWC 2 cut(s) 105, 114
BslFI GGGAC 1 cut(s) 435
BsmAI GTCTC 1 cut(s) 360
BsmBI CGTCTC 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 435
BsnI GGCC 2 cut(s) 300, 338
Bsp1286I GDGCHC 2 cut(s) 105, 114
Bsp143I GATC 2 cut(s) 170, 323
BspACI CCGC 1 cut(s) 74
BspANI GGCC 2 cut(s) 300, 338
BspCNI CTCAG 2 cut(s) 346, 366
BspHI TCATGA 1 cut(s) 189
BspLI GGNNCC 2 cut(s) 450, 451
BsrI ACTGG 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 2 cut(s) 170, 323
BssT1I CCWWGG 1 cut(s) 259
Bst4CI ACNGT 2 cut(s) 22, 427
BstAPI GCANNNNNTGC 1 cut(s) 109
BstC8I GCNNGC 3 cut(s) 74, 208, 298
BstDEI CTNAG 2 cut(s) 333, 374
BstKTI GATC 2 cut(s) 173, 326
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 2 cut(s) 170, 323
BstMWI GCNNNNNNNGC 3 cut(s) 109, 212, 221
BstSFI CTRYAG 2 cut(s) 155, 216
BstV1I GCAGC 2 cut(s) 236, 428
BsuRI GGCC 2 cut(s) 300, 338
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 47, 54
Cac8I GCNNGC 3 cut(s) 74, 208, 298
CciI TCATGA 1 cut(s) 189
Cfr13I GGNCC 2 cut(s) 256, 449
CseI GACGC 1 cut(s) 354
CviAII CATG 2 cut(s) 190, 430
CviJI RGCY 9 cut(s) 72, 215, 300, 308, 315, 338, 371, 397, 441
CviKI_1 RGCY 9 cut(s) 72, 215, 300, 308, 315, 338, 371, 397, 441
DdeI CTNAG 2 cut(s) 333, 374
DpnI GATC 2 cut(s) 172, 325
DpnII GATC 2 cut(s) 170, 323
DraIII CACNNNGTG 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 259
Eco47I GGWCC 2 cut(s) 256, 449
EcoO109I RGGNCCY 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
Esp3I CGTCTC 1 cut(s) 360
FaeI CATG 2 cut(s) 193, 433
FaiI YATR 6 cut(s) 11, 25, 191, 218, 294, 431
FaqI GGGAC 1 cut(s) 435
FatI CATG 2 cut(s) 189, 429
FauI CCCGC 1 cut(s) 81
Fnu4HI GCNGC 2 cut(s) 225, 442
Fsp4HI GCNGC 2 cut(s) 225, 442
GluI GCNGC 2 cut(s) 225, 442
GsaI CCCAGC 1 cut(s) 448
HaeIII GGCC 2 cut(s) 300, 338
HgaI GACGC 1 cut(s) 354
Hin1II CATG 2 cut(s) 193, 433
HinfI GANTC 1 cut(s) 413
Hpy188I TCNGA 3 cut(s) 167, 375, 409
Hpy188III TCNNGA 2 cut(s) 190, 400
Hpy99I CGWCG 1 cut(s) 370
HpyAV CCTTC 1 cut(s) 369
HpyCH4III ACNGT 2 cut(s) 22, 427
HpyCH4V TGCA 2 cut(s) 270, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 212, 221
HpyF3I CTNAG 2 cut(s) 333, 374
Hsp92II CATG 2 cut(s) 193, 433
KflI GGGWCCC 1 cut(s) 449
Kzo9I GATC 2 cut(s) 170, 323
LpnPI CCDG 6 cut(s) 53, 82, 143, 282, 320, 430
Lsp1109I GCAGC 2 cut(s) 236, 428
MalI GATC 2 cut(s) 172, 325
MboI GATC 2 cut(s) 170, 323
MboII GAAGA 4 cut(s) 54, 109, 112, 180
MhlI GDGCHC 2 cut(s) 105, 114
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 3 cut(s) 238, 403, 414
MseI TTAA 2 cut(s) 96, 134
MwoI GCNNNNNNNGC 3 cut(s) 109, 212, 221
NdeII GATC 2 cut(s) 170, 323
NlaIII CATG 2 cut(s) 193, 433
NlaIV GGNNCC 2 cut(s) 450, 451
PagI TCATGA 1 cut(s) 189
PkrI GCNGC 2 cut(s) 226, 443
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
PpuMI RGGWCCY 1 cut(s) 449
PsiI TTATAA 1 cut(s) 11
Psp5II RGGWCCY 1 cut(s) 449
PspFI CCCAGC 1 cut(s) 444
PspN4I GGNNCC 2 cut(s) 450, 451
PspPI GGNCC 2 cut(s) 256, 449
PspPPI RGGWCCY 1 cut(s) 449
SaqAI TTAA 2 cut(s) 96, 134
SatI GCNGC 2 cut(s) 225, 442
Sau3AI GATC 2 cut(s) 170, 323
Sau96I GGNCC 2 cut(s) 256, 449
SchI GAGTC 1 cut(s) 422
SduI GDGCHC 2 cut(s) 105, 114
SetI ASST 2 cut(s) 399, 443
SfcI CTRYAG 2 cut(s) 155, 216
SinI GGWCC 2 cut(s) 256, 449
SmlI CTYRAG 2 cut(s) 251, 398
SmoI CTYRAG 2 cut(s) 251, 398
SsiI CCGC 1 cut(s) 74
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 2 cut(s) 22, 427
Tru1I TTAA 2 cut(s) 96, 134
Tru9I TTAA 2 cut(s) 96, 134
TscAI CASTG 2 cut(s) 47, 54
TseI GCWGC 2 cut(s) 224, 441
TspDTI ATGAA 2 cut(s) 112, 186
TspRI CASTG 2 cut(s) 47, 54
VpaK11BI GGWCC 2 cut(s) 256, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.