Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001254

Physical Location & Seq

Genomic Coordinates Forward (+)

10019237 .. 10021350

Gene Structure 2114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTAATCTATATATACTTATTTTTCCCTTTCTGGAACTGGATATCAAGTACTTTGATCTTGGCCTCCCTAATCGTGATGCCACCAGTGATAGAGTCACAATTGAAAGTGCAGAAGCTACTCTTAAGTACAATGTAGAAATCAAGTGTGCAACTATAACTCCTGATGAAACTCGTGTTAAGGAGTTCAACTTGAAACAGATGTGGAGGGGTCCAAATGGGACAATCCGGAACATTTTAAATGGTACTGTTTTTAGAGAACCTATTATCTGCAGAAATGTTCCCCGCCTTGTTCCAGGTTGGACGAGGCCAATATGCATTGGGAGGCATGCTTTCGGTGATCAGTACCGAGCAATTGATGCAATCATAAAAGGACCTGGGAAACTTAAATTAGTTTTTGTACCTGATGGGTCCAATGAGAAGCAAGAATATGAGGTTTTCAACTTTACTGGTGCTGGAGTGGTAGCTCTGTCAATGTATAACACTGATGAGTCTATCCGATCCTTTGCGGATGCATCTATGAATACTGCCTACCAGAAAAAGTGGCCACTTTATCTTAGCACTAAAAATACTATTCTCAAGAAATATGATGGAAGGAAGTTTATGAAACTCATTGGAGATCCAGATTTGAAGCCTCATCGAAATATCCCTCCCCAACGGATATTATATTGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0016020 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

225

Amino Acids

25.82

Weight (kDa)

9.35

Isoelectric Point (pI)

26.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	11 - 197	3.3e-26	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54340 AT1G54340
fragaria_vesca	FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770 FvH4_3g13770
malus_domestica	MD05G1241100.v1.1 MD10G1219500.v1.1
prunus_persica	Prupe.4G124500_v2.0.a1 Prupe.4G124500_v2.0.a1
pyrus_communis	pycom05g21730 pycom10g18520
rosa_chinensis	RchiOBHm_Chr1g0322671 RchiOBHm_Chr1g0349881 RchiOBHm_Chr3g0487801 RchiOBHm_Chr3g0492471 RchiOBHm_Chr3g0496261 RchiOBHm_Chr3g0496271 RchiOBHm_Chr5g0022951 RchiOBHm_Chr5g0057661
rosa_laevigata	RLG00000017604 RLG00000018107 RLG00000019194 RLG00000032684
rosa_multiflora	Rmu_co8372099.1_g000001 Rmu_sc0000303.1_g000020 Rmu_sc0002263.1_g000012 Rmu_sc0002675.1_g000002 Rmu_sc0012663.1_g000003
rosa_roxburghii	Rroxscaffold_1G00056380
rosa_rugosa	Rorug05G0075800 Rorug05G0075900
rosa_samantha	Rh1BG010100 Rh1CG086100 Rh1DG139600 Rh2AG460100 Rh2BG230500 Rh2DG286700 Rh3AG284700 Rh3AG304200 Rh3AG328100 Rh3CG325200 Rh3DG354500 Rh4AG076600 Rh4CG081500 Rh5AG162200 Rh5BG161400 Rh5CG176100 Rh5CG412000 Rh5DG162800 Rh6BG196700
rosa_wichuraiana	Rw5G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	228
AciI	CCGC	2 cut(s)	286, 509
AclWI	GGATC	2 cut(s)	495, 614
AcoI	YGGCCR	2 cut(s)	545, 671
AfaI	GTAC	5 cut(s)	53, 131, 247, 347, 402
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	5 cut(s)	107, 190, 196, 442, 631
AjnI	CCWGG	2 cut(s)	295, 376
AluBI	AGCT	2 cut(s)	119, 467
AluI	AGCT	2 cut(s)	119, 467
AlwI	GGATC	2 cut(s)	495, 614
Aor13HI	TCCGGA	1 cut(s)	228
AoxI	GGCC	4 cut(s)	64, 308, 545, 671
AspS9I	GGNCC	3 cut(s)	212, 374, 411
AsuHPI	GGTGA	1 cut(s)	350
AvaII	GGWCC	3 cut(s)	212, 374, 411
BalI	TGGCCA	2 cut(s)	547, 673
BauI	CACGAG	1 cut(s)	174
BccI	CCATC	2 cut(s)	401, 584
BciT130I	CCWGG	2 cut(s)	297, 378
BclI	TGATCA	1 cut(s)	340
BfmI	CTRYAG	1 cut(s)	271
BfrI	CTTAAG	1 cut(s)	125
BmcAI	AGTACT	1 cut(s)	53
Bme1390I	CCNGG	2 cut(s)	297, 378
Bme18I	GGWCC	3 cut(s)	212, 374, 411
BmgT120I	GGNCC	3 cut(s)	212, 374, 411
BmiI	GGNNCC	2 cut(s)	213, 412
BmrFI	CCNGG	2 cut(s)	297, 378
BmsI	GCATC	4 cut(s)	70, 349, 502, 524
BpmI	CTGGAG	1 cut(s)	477
BpuEI	CTTGAG	1 cut(s)	563
BsaJI	CCNNGG	1 cut(s)	377
BsaWI	WCCGGW	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bse1I	ACTGG	3 cut(s)	45, 87, 454
BseAI	TCCGGA	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	297, 378
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	1 cut(s)	517
BseNI	ACTGG	3 cut(s)	45, 87, 454
BsgI	GTGCAG	1 cut(s)	132
BshFI	GGCC	4 cut(s)	66, 310, 547, 673
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	4 cut(s)	66, 310, 547, 673
Bsp13I	TCCGGA	1 cut(s)	228
Bsp143I	GATC	4 cut(s)	58, 340, 500, 619
BspACI	CCGC	2 cut(s)	286, 509
BspANI	GGCC	4 cut(s)	66, 310, 547, 673
BspEI	TCCGGA	1 cut(s)	228
BspLI	GGNNCC	2 cut(s)	213, 412
BspMAI	CTGCAG	1 cut(s)	275
BspPI	GGATC	2 cut(s)	495, 614
BspTI	CTTAAG	1 cut(s)	125
BsrI	ACTGG	3 cut(s)	45, 87, 454
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	4 cut(s)	58, 340, 500, 619
BssSI	CACGAG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	297, 378
Bst4CI	ACNGT	1 cut(s)	250
BstAFI	CTTAAG	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	557
BstF5I	GGATG	1 cut(s)	517
BstKTI	GATC	4 cut(s)	61, 343, 503, 622
BstMBI	GATC	4 cut(s)	58, 340, 500, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNI	CCWGG	2 cut(s)	297, 378
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	295, 376
BstSFI	CTRYAG	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BsuRI	GGCC	4 cut(s)	66, 310, 547, 673
BtsCI	GGATG	1 cut(s)	517
BtsIMutI	CAGTG	2 cut(s)	94, 483
Cac8I	GCNNGC	1 cut(s)	330
Cfr13I	GGNCC	3 cut(s)	212, 374, 411
Csp6I	GTAC	5 cut(s)	52, 130, 246, 346, 401
CviAII	CATG	2 cut(s)	329, 675
CviJI	RGCY	8 cut(s)	5, 66, 119, 310, 467, 547, 634, 673
CviKI_1	RGCY	8 cut(s)	5, 66, 119, 310, 467, 547, 634, 673
CviQI	GTAC	5 cut(s)	52, 130, 246, 346, 401
DdeI	CTNAG	1 cut(s)	557
DpnI	GATC	4 cut(s)	60, 342, 502, 621
DpnII	GATC	4 cut(s)	58, 340, 500, 619
DraI	TTTAAA	1 cut(s)	240
EaeI	YGGCCR	2 cut(s)	545, 671
Eco32I	GATATC	1 cut(s)	46
Eco47I	GGWCC	3 cut(s)	212, 374, 411
EcoO109I	RGGNCCY	1 cut(s)	374
EcoRII	CCWGG	2 cut(s)	295, 376
EcoRV	GATATC	1 cut(s)	46
EcoT22I	ATGCAT	2 cut(s)	320, 517
FaeI	CATG	2 cut(s)	332, 678
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	2 cut(s)	328, 674
FauI	CCCGC	1 cut(s)	293
FbaI	TGATCA	1 cut(s)	340
FokI	GGATG	1 cut(s)	524
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	4 cut(s)	66, 310, 547, 673
HapII	CCGG	1 cut(s)	229
Hin1II	CATG	2 cut(s)	332, 678
HinfI	GANTC	2 cut(s)	96, 491
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	1 cut(s)	350
Hpy188I	TCNGA	1 cut(s)	500
Hpy188III	TCNNGA	6 cut(s)	35, 77, 164, 229, 580, 623
HpyAV	CCTTC	1 cut(s)	588
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	6 cut(s)	113, 152, 273, 318, 362, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	1 cut(s)	557
Hsp92II	CATG	2 cut(s)	332, 678
Kpn2I	TCCGGA	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	58, 340, 500, 619
LweI	GCATC	4 cut(s)	70, 349, 502, 524
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	4 cut(s)	60, 342, 502, 621
MboI	GATC	4 cut(s)	58, 340, 500, 619
MfeI	CAATTG	2 cut(s)	102, 354
MflI	RGATCY	1 cut(s)	619
MlsI	TGGCCA	2 cut(s)	547, 673
MluCI	AATT	3 cut(s)	102, 354, 389
MluNI	TGGCCA	2 cut(s)	547, 673
MlyI	GAGTC	2 cut(s)	105, 500
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	7 cut(s)	77, 201, 300, 318, 427, 645, 660
Mox20I	TGGCCA	2 cut(s)	547, 673
Mph1103I	ATGCAT	2 cut(s)	320, 517
MroI	TCCGGA	1 cut(s)	228
MscI	TGGCCA	2 cut(s)	547, 673
MseI	TTAA	4 cut(s)	126, 180, 239, 387
Msp20I	TGGCCA	2 cut(s)	547, 673
MspCI	CTTAAG	1 cut(s)	125
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	2 cut(s)	297, 378
MunI	CAATTG	2 cut(s)	102, 354
MvaI	CCWGG	2 cut(s)	297, 378
MwoI	GCNNNNNNNGC	1 cut(s)	359
NdeII	GATC	4 cut(s)	58, 340, 500, 619
NlaIII	CATG	2 cut(s)	332, 678
NlaIV	GGNNCC	2 cut(s)	213, 412
NmuCI	GTSAC	1 cut(s)	97
NsiI	ATGCAT	2 cut(s)	320, 517
NspI	RCATGY	1 cut(s)	332
PaeI	GCATGC	1 cut(s)	332
PleI	GAGTC	2 cut(s)	104, 499
PpsI	GAGTC	2 cut(s)	104, 499
PpuMI	RGGWCCY	1 cut(s)	374
Psp5II	RGGWCCY	1 cut(s)	374
Psp6I	CCWGG	2 cut(s)	295, 376
PspGI	CCWGG	2 cut(s)	295, 376
PspN4I	GGNNCC	2 cut(s)	213, 412
PspPI	GGNCC	3 cut(s)	212, 374, 411
PspPPI	RGGWCCY	1 cut(s)	374
PstI	CTGCAG	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	619
RsaI	GTAC	5 cut(s)	53, 131, 247, 347, 402
RsaNI	GTAC	5 cut(s)	52, 130, 246, 346, 401
SaqAI	TTAA	4 cut(s)	126, 180, 239, 387
Sau3AI	GATC	4 cut(s)	58, 340, 500, 619
Sau96I	GGNCC	3 cut(s)	212, 374, 411
ScaI	AGTACT	1 cut(s)	53
SchI	GAGTC	2 cut(s)	105, 500
ScrFI	CCNGG	2 cut(s)	297, 378
SetI	ASST	7 cut(s)	121, 265, 301, 379, 406, 438, 469
SfaNI	GCATC	4 cut(s)	70, 349, 502, 524
SfcI	CTRYAG	1 cut(s)	271
SinI	GGWCC	3 cut(s)	212, 374, 411
SmlI	CTYRAG	2 cut(s)	125, 578
SmoI	CTYRAG	2 cut(s)	125, 578
SphI	GCATGC	1 cut(s)	332
Sse9I	AATT	3 cut(s)	102, 354, 389
SsiI	CCGC	2 cut(s)	286, 509
StyD4I	CCNGG	2 cut(s)	295, 376
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	640
TasI	AATT	3 cut(s)	102, 354, 389
TatI	WGTACW	2 cut(s)	51, 129
Tru1I	TTAA	4 cut(s)	126, 180, 239, 387
Tru9I	TTAA	4 cut(s)	126, 180, 239, 387
TscAI	CASTG	2 cut(s)	94, 490
TseFI	GTSAC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	3 cut(s)	183, 536, 620
TspGWI	ACGGA	1 cut(s)	673
TspRI	CASTG	2 cut(s)	94, 490
Vha464I	CTTAAG	1 cut(s)	125
VpaK11BI	GGWCC	3 cut(s)	212, 374, 411
XceI	RCATGY	1 cut(s)	332
ZrmI	AGTACT	1 cut(s)	53
Zsp2I	ATGCAT	2 cut(s)	320, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.