RchiOBHm_Chr1g0322951

Belongs to the cysteine synthase cystathionine beta- synthase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001137
Physical Location & Seq
Forward (+)
10541110 .. 10548161
7052 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
ATGCTTATGCTCTTGAAACTGCTGTTTTGCTTGGTATGCTCGAAACTACAGGACCTGAGATATGGTGACATCTTTGTAATGGGAATTGGTAGCGGAGGCACCATCTCTGGGGTTGGACGGTATCTCAAATCTCAGAACCTTGATTGTAAGATATATGGAGTGGAGCCTGCTGAAAGTAATAATATACTAAATGGTGGTAAACCAGGTCCTCATTCGATTACTGGCAATGGGATTGGATTCAAACCCAATGTATTGGACATGGACATAATGGAAAGACTTCTTGAGCTACTTCGTGTATGTGATTTCGCTGACAAAGTCTTCAACACCAGTGAGACACGAATAAAAATTTTACTTGAAGAGGCACATGACTGGAAGCTTTCCACTCCATGCAAGCCAATACCACAGAGTTCTCTTTGGCCGGCAAACACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000097 GO:0002376 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0006955 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009056 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009509 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019499 GO:0019500 GO:0019752 GO:0019842 GO:0021700 GO:0022622 GO:0030154 GO:0030170 GO:0032501 GO:0032502 GO:0034641 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050017 GO:0050662 GO:0050896 GO:0051410 GO:0070279 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097159 GO:0098754 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko00270 ko00460 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00460 map00920 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
PALP

Protein Analysis

143

Amino Acids

15.79

Weight (kDa)

6.71

Isoelectric Point (pI)

23.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PALP PF00291 23 - 95 3.7e-11 Pyridoxal-phosphate dependent enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AciI CCGC 1 cut(s) 93
AcoI YGGCCR 1 cut(s) 416
AcsI RAATTY 1 cut(s) 345
AfiI CCNNNNNNNGG 1 cut(s) 108
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 4 cut(s) 16, 241, 322, 356
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 2 cut(s) 286, 376
AluI AGCT 2 cut(s) 286, 376
Alw26I GTCTC 1 cut(s) 326
AlwNI CAGNNNCTG 1 cut(s) 55
AoxI GGCC 1 cut(s) 416
ApoI RAATTY 1 cut(s) 345
Asp700I GAANNNNTTC 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 52, 206
AsuHPI GGTGA 1 cut(s) 77
AvaII GGWCC 2 cut(s) 52, 206
BanI GGYRCC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 310
BccI CCATC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 204
BcoDI GTCTC 1 cut(s) 326
BfmI CTRYAG 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 2 cut(s) 52, 206
BmgT120I GGNCC 2 cut(s) 52, 206
BmiI GGNNCC 2 cut(s) 100, 165
BmrFI CCNGG 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 429
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse118I RCCGGY 1 cut(s) 418
Bse1I ACTGG 3 cut(s) 226, 327, 374
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 2 cut(s) 47, 146
BseNI ACTGG 3 cut(s) 226, 327, 374
BshFI GGCC 1 cut(s) 418
BshNI GGYRCC 1 cut(s) 98
BsiSI CCGG 1 cut(s) 419
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 326
BsnI GGCC 1 cut(s) 418
BspACI CCGC 1 cut(s) 93
BspANI GGCC 1 cut(s) 418
BspCNI CTCAG 2 cut(s) 48, 145
BspLI GGNNCC 2 cut(s) 100, 165
BspT107I GGYRCC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 418
BsrI ACTGG 3 cut(s) 226, 327, 374
BssAI RCCGGY 1 cut(s) 418
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 351
BstBAI YACGTR 1 cut(s) 429
BstC8I GCNNGC 3 cut(s) 168, 392, 420
BstDEI CTNAG 2 cut(s) 56, 132
BstMAI GTCTC 1 cut(s) 326
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstSFI CTRYAG 1 cut(s) 47
BstV2I GAAGAC 1 cut(s) 310
BstXI CCANNNNNNTGG 1 cut(s) 253
BsuRI GGCC 1 cut(s) 418
BtsIMutI CAGTG 1 cut(s) 334
Cac8I GCNNGC 3 cut(s) 168, 392, 420
CaiI CAGNNNCTG 1 cut(s) 55
Cfr10I RCCGGY 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 52, 206
CsiI ACCWGGT 1 cut(s) 202
CviAII CATG 3 cut(s) 259, 365, 387
CviJI RGCY 5 cut(s) 166, 286, 376, 394, 418
CviKI_1 RGCY 5 cut(s) 166, 286, 376, 394, 418
DdeI CTNAG 2 cut(s) 56, 132
EaeI YGGCCR 1 cut(s) 416
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco47I GGWCC 2 cut(s) 52, 206
EcoO109I RGGNCCY 2 cut(s) 52, 206
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 3 cut(s) 262, 368, 390
FatI CATG 3 cut(s) 258, 364, 386
HaeIII GGCC 1 cut(s) 418
HapII CCGG 1 cut(s) 419
Hin1II CATG 3 cut(s) 262, 368, 390
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 1 cut(s) 237
HpaII CCGG 1 cut(s) 419
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 2 cut(s) 13, 281
Hpy8I GTNNAC 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4IV ACGT 1 cut(s) 428
HpyCH4V TGCA 1 cut(s) 390
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 2 cut(s) 56, 132
HpySE526I ACGT 1 cut(s) 428
Hsp92II CATG 3 cut(s) 262, 368, 390
KroI GCCGGC 1 cut(s) 418
KroNI GCCGGC 1 cut(s) 420
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 9 cut(s) 35, 68, 93, 180, 189, 207, 216, 340, 355
MabI ACCWGGT 1 cut(s) 202
MaeII ACGT 1 cut(s) 428
MaeIII GTNAC 1 cut(s) 65
MboII GAAGA 2 cut(s) 310, 368
MluCI AATT 2 cut(s) 84, 345
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 3 cut(s) 89, 219, 352
MroNI GCCGGC 1 cut(s) 418
MroXI GAANNNNTTC 1 cut(s) 276
MspI CCGG 1 cut(s) 419
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
MwoI GCNNNNNNNGC 1 cut(s) 36
NaeI GCCGGC 1 cut(s) 420
NgoMIV GCCGGC 1 cut(s) 418
NlaIII CATG 3 cut(s) 262, 368, 390
NlaIV GGNNCC 2 cut(s) 100, 165
NmuCI GTSAC 1 cut(s) 65
PdiI GCCGGC 1 cut(s) 420
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 1 cut(s) 237
PflFI GACNNNGTC 1 cut(s) 314
Ppu21I YACGTR 1 cut(s) 429
PpuMI RGGWCCY 2 cut(s) 52, 206
Psp5II RGGWCCY 2 cut(s) 52, 206
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 100, 165
PspPI GGNCC 2 cut(s) 52, 206
PspPPI RGGWCCY 2 cut(s) 52, 206
PstNI CAGNNNCTG 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 314
Sau96I GGNCC 2 cut(s) 52, 206
ScrFI CCNGG 1 cut(s) 204
SetI ASST 6 cut(s) 57, 141, 208, 288, 378, 431
SexAI ACCWGGT 1 cut(s) 202
SfcI CTRYAG 1 cut(s) 47
SinI GGWCC 2 cut(s) 52, 206
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 2 cut(s) 84, 345
SsiI CCGC 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 120
TaiI ACGT 1 cut(s) 431
TaqI TCGA 2 cut(s) 41, 215
TasI AATT 2 cut(s) 84, 345
TfiI GAWTC 1 cut(s) 237
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
TspRI CASTG 1 cut(s) 334
Tth111I GACNNNGTC 1 cut(s) 314
VpaK11BI GGWCC 2 cut(s) 52, 206
XapI RAATTY 1 cut(s) 345
XmnI GAANNNNTTC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.