Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000828

Physical Location & Seq

Genomic Coordinates Forward (+)

15500101 .. 15502195

Gene Structure 2095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAAGCAGGTTTCAGCTTCTACCATGGAGGTGTTGGTGGATGCACTTTCAAGTTCAGCAGGGCTATCCACTTTCTCTTATACGTTGGATCGAGACCGAGGACTTAAACAGAAAGAAATGCAGATTGTCAATGAGATTCAAGCAATTGCTGCTGCCTCCCATATTTTTACCAATGTTGCTCAGCGTGATTACGAGTACATTGAGGAGGACGACCTCAGGAGGTTCATGATTAATGAAGACGTGGAACTTGTGTTTCGATTGATTGATGTCGGAGAGACGGGAAAAATTGACAAAAGAGCTCTAACAGATTGGGTGGTCAAGGTCTACAATGGTCGCAAAGCATTAGATCATGCTCTAACCGACACCAAAGCAGCTGTAAAGCAATTGAACGAAATTGTGACCGGCATCCTGATTGTTATTATCATTGTTGTGTGGCTTATATTAATGGAAGTTGCAACCACGAAAGTACTTGTTTTCATCTCATCACAGCTCGTATTAGCAGCCTTTATCTTTGGAAACACTTGCAAGAACATATTTGAAGCTATCGTATTTGTCTTTGTAATACATCCGTTTGATGTTGGTGACCGCTGTCTTGTTGATGGCGTTCCGCTGAGGGTTGAGGAGATGAACATCCTTACTACAGTTTTCTTGAAACTAAATAATGAGAGGGTATATTATCCAAACTCAGTTTTATCAACAAAGACCATTAGCAATTATTATAGAAGTTCAGACATGGGAGATACCGTGGATTTCTCAATCGATTTAATTCCAGTTGACAGGATTAACCTGCTGAAAGCGAAAATAAAGAGTTATTTGGAGAGTAACCCGCAGTATTGGCACCCAGATCACAATGTGGTGGTGATTGAGATTGAAAATGTGAATAAGTTAAAGATGGCACTCTATTTTAATCACACTATGAACTTTCAAGAATTTAGGGAAATAAATAAGCGGAGATCTGAGCTGGTGATTGAATTGATGAGAATATTTGAAGAGCTAAACATCGTATACAATCTGCTTCCTCACGATGTCAGCGTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

346

Amino Acids

39.68

Weight (kDa)

5.29

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MS_channel_2nd	PF00924	175 - 240	3.9e-09	Mechanosensitive ion channel, beta-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12080 AT5G12080 AT5G12080 AT5G19520 AT5G19520
fragaria_vesca	FvH4_2g31211 FvH4_2g31220 FvH4_2g31230 FvH4_2g31240
malus_domestica	MD08G1070000.v1.1 MD15G1052100.v1.1
prunus_persica	Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1 Prupe.1G406100_v2.0.a1
pyrus_communis	pycom08g05800 pycom15g04990 pycom16g12570
rosa_chinensis	RchiOBHm_Chr1g0326931 RchiOBHm_Chr1g0326941 RchiOBHm_Chr6g0276141 RchiOBHm_Chr6g0283901 RchiOBHm_Chr6g0311561 RchiOBHm_Chr6g0311571 RchiOBHm_Chr6g0311581 RchiOBHm_Chr6g0311591
rosa_laevigata	RLG00000010389 RLG00000010390 RLG00000010391 RLG00000010393 RLG00000012788 RLG00000030050
rosa_multiflora	Rmu_sc0003315.1_g000003 Rmu_sc0006781.1_g000009 Rmu_sc0007556.1_g000006 Rmu_sc0018059.1_g000002 Rmu_sc0018059.1_g000003
rosa_roxburghii	Rroxscaffold_4G00323490 Rroxscaffold_7G00157470 Rroxscaffold_7G00157480 Rroxscaffold_7G00157490 Rroxscaffold_7G00185080
rosa_rugosa	Rorug01G0062100 Rorug01G0062300 Rorug06G0158200 Rorug06G0158300 Rorug06G0389800.1 Rorug06G0389900
rosa_samantha	Rh1AG079400 Rh1BG063600 Rh1CG077000 Rh1DG083500 Rh6AG504700 Rh6AG504800 Rh6AG504900 Rh6BG272400 Rh6BG515600 Rh6BG515700 Rh6BG515800 Rh6CG521400 Rh6CG521600 Rh6DG266500 Rh6DG507300 Rh6DG507400
rosa_wichuraiana	Rw1G006300 Rw6G018310 Rw6G023400 Rw6G043960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	795
AccB1I	GGYRCC	1 cut(s)	837
AccI	GTMKAC	2 cut(s)	324, 1005
AciI	CCGC	4 cut(s)	586, 608, 827, 949
AclWI	GGATC	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	929
AdeI	CACNNNGTG	1 cut(s)	853
AfaI	GTAC	2 cut(s)	197, 468
AgsI	TTSAA	9 cut(s)	51, 140, 388, 539, 652, 872, 926, 971, 989
AjiI	CACGTC	1 cut(s)	241
AluBI	AGCT	7 cut(s)	17, 299, 374, 490, 542, 961, 994
AluI	AGCT	7 cut(s)	17, 299, 374, 490, 542, 961, 994
Alw21I	GWGCWC	1 cut(s)	301
Alw26I	GTCTC	2 cut(s)	87, 269
AlwI	GGATC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	1035
ApeKI	GCWGC	4 cut(s)	149, 152, 371, 500
ApoI	RAATTY	1 cut(s)	929
AseI	ATTAAT	2 cut(s)	231, 443
AsuHPI	GGTGA	3 cut(s)	593, 871, 976
AxyI	CCTNAGG	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	837
BanII	GRGCYC	1 cut(s)	301
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	301
BbvCI	CCTCAGC	1 cut(s)	611
BbvI	GCAGC	4 cut(s)	136, 139, 383, 512
BccI	CCATC	2 cut(s)	593, 886
BcoDI	GTCTC	2 cut(s)	87, 269
BfmI	CTRYAG	1 cut(s)	639
BfuAI	ACCTGC	1 cut(s)	795
BglII	AGATCT	1 cut(s)	953
BisI	GCNGC	4 cut(s)	150, 153, 372, 501
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	4 cut(s)	151, 154, 373, 502
BmcAI	AGTACT	1 cut(s)	468
BmgBI	CACGTC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	839
BmsI	GCATC	2 cut(s)	31, 414
BoxI	GACNNNNGTC	1 cut(s)	588
BpiI	GAAGAC	1 cut(s)	243
Bpu10I	CCTNAGC	1 cut(s)	611
Bpu1102I	GCTNAGC	1 cut(s)	180
Bsa29I	ATCGAT	1 cut(s)	759
BsaBI	GATNNNNATC	1 cut(s)	629
BsaI	GGTCTC	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	24, 97, 744
BsaXI	ACNNNNNCTCC	2 cut(s)	729, 759
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	1 cut(s)	770
Bse21I	CCTNAGG	1 cut(s)	215
Bse8I	GATNNNNATC	1 cut(s)	629
BseCI	ATCGAT	1 cut(s)	759
BseDI	CCNNGG	3 cut(s)	24, 97, 744
BseGI	GGATG	4 cut(s)	46, 405, 565, 630
BseJI	GATNNNNATC	1 cut(s)	629
BseMII	CTCAG	5 cut(s)	194, 229, 602, 699, 948
BseNI	ACTGG	1 cut(s)	770
BseRI	GAGGAG	2 cut(s)	218, 635
BseXI	GCAGC	4 cut(s)	136, 139, 383, 512
BshFI	GGCC	1 cut(s)	1037
BshNI	GGYRCC	1 cut(s)	837
BshVI	ATCGAT	1 cut(s)	759
BsiHKAI	GWGCWC	1 cut(s)	301
BsiSI	CCGG	1 cut(s)	402
BsmAI	GTCTC	2 cut(s)	87, 269
BsmBI	CGTCTC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	1037
Bso31I	GGTCTC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	4 cut(s)	88, 346, 844, 953
Bsp1720I	GCTNAGC	1 cut(s)	180
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	4 cut(s)	586, 608, 827, 949
BspANI	GGCC	1 cut(s)	1037
BspCNI	CTCAG	5 cut(s)	193, 228, 603, 698, 949
BspDI	ATCGAT	1 cut(s)	759
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	839
BspMI	ACCTGC	1 cut(s)	795
BspPI	GGATC	1 cut(s)	96
BspQI	GCTCTTC	1 cut(s)	984
BspT107I	GGYRCC	1 cut(s)	837
BspTNI	GGTCTC	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	770
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	3 cut(s)	24, 97, 744
BssMI	GATC	4 cut(s)	88, 346, 844, 953
BssNAI	GTATAC	1 cut(s)	1006
BssT1I	CCWWGG	1 cut(s)	24
Bst1107I	GTATAC	1 cut(s)	1006
Bst4CI	ACNGT	2 cut(s)	643, 745
Bst6I	CTCTTC	1 cut(s)	984
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstDEI	CTNAG	5 cut(s)	180, 215, 611, 685, 957
BstDSI	CCRYGG	2 cut(s)	24, 744
BstEII	GGTNACC	1 cut(s)	581
BstF5I	GGATG	4 cut(s)	46, 405, 565, 630
BstKTI	GATC	4 cut(s)	91, 349, 847, 956
BstMAI	GTCTC	2 cut(s)	87, 269
BstMBI	GATC	4 cut(s)	88, 346, 844, 953
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 835
BstPAI	GACNNNNGTC	1 cut(s)	588
BstPI	GGTNACC	1 cut(s)	581
BstSFI	CTRYAG	1 cut(s)	639
BstV1I	GCAGC	4 cut(s)	136, 139, 383, 512
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	953
BstYI	RGATCY	1 cut(s)	953
BstZ17I	GTATAC	1 cut(s)	1006
Bsu15I	ATCGAT	1 cut(s)	759
Bsu36I	CCTNAGG	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	1037
BsuTUI	ATCGAT	1 cut(s)	759
BtgI	CCRYGG	2 cut(s)	24, 744
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	4 cut(s)	46, 405, 565, 630
BveI	ACCTGC	1 cut(s)	795
CciI	TCATGA	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	401
ClaI	ATCGAT	1 cut(s)	759
Csp6I	GTAC	2 cut(s)	196, 467
CviAII	CATG	4 cut(s)	25, 226, 350, 733
CviQI	GTAC	2 cut(s)	196, 467
DdeI	CTNAG	5 cut(s)	180, 215, 611, 685, 957
DpnI	GATC	4 cut(s)	90, 348, 846, 955
DpnII	GATC	4 cut(s)	88, 346, 844, 953
DraIII	CACNNNGTG	1 cut(s)	853
Eam1104I	CTCTTC	1 cut(s)	984
EarI	CTCTTC	1 cut(s)	984
Ecl136II	GAGCTC	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	301
Eco31I	GGTCTC	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	299
Eco81I	CCTNAGG	1 cut(s)	215
Eco91I	GGTNACC	1 cut(s)	581
EcoICRI	GAGCTC	1 cut(s)	299
EcoO65I	GGTNACC	1 cut(s)	581
EcoT14I	CCWWGG	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	24
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	4 cut(s)	28, 229, 353, 736
FatI	CATG	4 cut(s)	24, 225, 349, 732
FauI	CCCGC	1 cut(s)	834
FblI	GTMKAC	2 cut(s)	324, 1005
Fnu4HI	GCNGC	4 cut(s)	150, 153, 372, 501
FokI	GGATG	4 cut(s)	53, 392, 552, 617
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	4 cut(s)	150, 153, 372, 501
GluI	GCNGC	4 cut(s)	150, 153, 372, 501
HaeIII	GGCC	1 cut(s)	1037
HapII	CCGG	1 cut(s)	402
Hin1II	CATG	4 cut(s)	28, 229, 353, 736
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	3 cut(s)	593, 871, 976
Hpy166II	GTNNAC	3 cut(s)	325, 775, 1006
Hpy188I	TCNGA	3 cut(s)	272, 730, 958
Hpy188III	TCNNGA	7 cut(s)	92, 217, 226, 409, 649, 926, 1022
Hpy8I	GTNNAC	3 cut(s)	325, 775, 1006
HpyCH4III	ACNGT	2 cut(s)	643, 745
HpyCH4IV	ACGT	2 cut(s)	83, 240
HpyCH4V	TGCA	4 cut(s)	44, 121, 455, 525
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 835
HpyF3I	CTNAG	5 cut(s)	180, 215, 611, 685, 957
HpySE526I	ACGT	2 cut(s)	83, 240
Hsp92II	CATG	4 cut(s)	28, 229, 353, 736
Kzo9I	GATC	4 cut(s)	88, 346, 844, 953
LguI	GCTCTTC	1 cut(s)	984
LpnPI	CCDG	9 cut(s)	45, 202, 415, 422, 763, 783, 800, 855, 947
Lsp1109I	GCAGC	4 cut(s)	136, 139, 383, 512
LweI	GCATC	2 cut(s)	31, 414
MaeII	ACGT	2 cut(s)	83, 240
MaeIII	GTNAC	3 cut(s)	397, 581, 821
MalI	GATC	4 cut(s)	90, 348, 846, 955
MboI	GATC	4 cut(s)	88, 346, 844, 953
MboII	GAAGA	2 cut(s)	248, 1001
MfeI	CAATTG	2 cut(s)	144, 383
MflI	RGATCY	1 cut(s)	953
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	8 cut(s)	144, 285, 383, 393, 712, 765, 929, 971
MmeI	TCCRAC	2 cut(s)	66, 250
MseI	TTAA	7 cut(s)	105, 231, 443, 764, 783, 887, 906
MslI	CAYNNNNRTG	2 cut(s)	29, 428
MspA1I	CMGCKG	3 cut(s)	374, 588, 610
MspI	CCGG	1 cut(s)	402
MunI	CAATTG	2 cut(s)	144, 383
MwoI	GCNNNNNNNGC	2 cut(s)	149, 835
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	4 cut(s)	88, 346, 844, 953
NlaIII	CATG	4 cut(s)	28, 229, 353, 736
NlaIV	GGNNCC	1 cut(s)	839
NmuCI	GTSAC	2 cut(s)	397, 581
PagI	TCATGA	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	984
PcsI	WCGNNNNNNNCGW	1 cut(s)	1029
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	4 cut(s)	151, 154, 373, 502
PshAI	GACNNNNGTC	1 cut(s)	588
PshBI	ATTAAT	2 cut(s)	231, 443
Psp124BI	GAGCTC	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	581
PspN4I	GGNNCC	1 cut(s)	839
PsuI	RGATCY	1 cut(s)	953
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	2 cut(s)	197, 468
RsaNI	GTAC	2 cut(s)	196, 467
RseI	CAYNNNNRTG	2 cut(s)	29, 428
SacI	GAGCTC	1 cut(s)	301
SapI	GCTCTTC	1 cut(s)	984
SaqAI	TTAA	7 cut(s)	105, 231, 443, 764, 783, 887, 906
SatI	GCNGC	4 cut(s)	150, 153, 372, 501
Sau3AI	GATC	4 cut(s)	88, 346, 844, 953
ScaI	AGTACT	1 cut(s)	468
SduI	GDGCHC	1 cut(s)	301
SfaNI	GCATC	2 cut(s)	31, 414
SfcI	CTRYAG	1 cut(s)	639
SmiMI	CAYNNNNRTG	2 cut(s)	29, 428
Sse9I	AATT	8 cut(s)	144, 285, 383, 393, 712, 765, 929, 971
SsiI	CCGC	4 cut(s)	586, 608, 827, 949
SspI	AATATT	1 cut(s)	984
SstI	GAGCTC	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	2 cut(s)	643, 745
TaiI	ACGT	2 cut(s)	86, 243
TaqI	TCGA	3 cut(s)	91, 256, 759
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	8 cut(s)	144, 285, 383, 393, 712, 765, 929, 971
TatI	WGTACW	2 cut(s)	195, 466
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	7 cut(s)	105, 231, 443, 764, 783, 887, 906
Tru9I	TTAA	7 cut(s)	105, 231, 443, 764, 783, 887, 906
TseFI	GTSAC	2 cut(s)	397, 581
TseI	GCWGC	4 cut(s)	149, 152, 371, 500
Tsp45I	GTSAC	2 cut(s)	397, 581
TspDTI	ATGAA	6 cut(s)	17, 214, 249, 466, 641, 932
TspGWI	ACGGA	1 cut(s)	558
VspI	ATTAAT	2 cut(s)	231, 443
XapI	RAATTY	1 cut(s)	929
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XmiI	GTMKAC	2 cut(s)	324, 1005
ZrmI	AGTACT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.