RchiOBHm_Chr1g0334341

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000597
Physical Location & Seq
Forward (+)
26515577 .. 26517697
2121 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 786 bp
ATGTCGTCTGAAGGCCTTTTTGGCATAGTCCTTCATGGGGCAAATATTTTGTCGGTCCTCTGCAATTTTGGATATGCTATGGTGCAGTCATCGCTTGCACATTACTTGGAGGGCAGAGCCTTAAGAATTCCCGATGGAACAATGAAGCTGTACCAGTTTATTATTATGTTCGGAAGCGTCACACTCATTTTGGCTCAAATGCCATCCTTCCACTCCTTAAGGCATATTAACCTCGTTTCTCTAATCCTTTGTCTTGCATATAGCGCCTGCGTCACTGCTGGCTGCATATACATTGGGCATACGAACAATGCTCCTGTAAAGGACTATTCCGTAAAAGGCAGTACAAAAGATCGGTATTTTGGTATCTTTAATGGCATCTCAATCATCGCTACCACATACGCAAGTGGAATAATTCCGGAGATAGTTAAGTACGTTGGCTATGTGTGTGCTAGTGTTATAGTGACAACCTATTTCAGTGTCGTAATGTCTGGGTATTGGGCGTTTGGCAACCAAGCTATGGGAACAGTTCTTTCCAATTTTATGGGTGTTGATAGGAAGCCTTTACTCCCTACCTGGGTTTTGCTCATGACCAACGTCTTCACTCTTGTACAAGTCTTGGCTGTCACAGTGGTTTACTTGCAACCAACAACTGAAGTGTTTGAGAAGAAATTTGCAGGCCCAAAAATGGATCAATTTTCCATCCGTAATGTTGTGTCGCTATTGATTCTCCGGTCGGTCACCATTGTGGTAGCTACATTTTTTGTTGCGATGTTACCTTTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

261

Amino Acids

28.7

Weight (kDa)

9.07

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 38 - 258 3.1e-17 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 517
AccIII TCCGGA 1 cut(s) 415
AclWI GGATC 1 cut(s) 696
AcsI RAATTY 2 cut(s) 126, 668
AcuI CTGAAG 2 cut(s) 30, 672
AfaI GTAC 4 cut(s) 152, 343, 431, 609
AfiI CCNNNNNNNGG 4 cut(s) 37, 517, 574, 685
AflII CTTAAG 2 cut(s) 121, 217
AjnI CCWGG 1 cut(s) 572
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AleI CACNNNNGTG 1 cut(s) 743
AluBI AGCT 3 cut(s) 148, 515, 752
AluI AGCT 3 cut(s) 148, 515, 752
AlwI GGATC 1 cut(s) 696
Aor13HI TCCGGA 1 cut(s) 415
AoxI GGCC 2 cut(s) 13, 676
ApeKI GCWGC 1 cut(s) 282
ApoI RAATTY 2 cut(s) 126, 668
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 2 cut(s) 55, 677
AsuHPI GGTGA 1 cut(s) 730
AvaII GGWCC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 589
BbvI GCAGC 1 cut(s) 269
BccI CCATC 3 cut(s) 128, 211, 707
BciT130I CCWGG 1 cut(s) 574
BfaI CTAG 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 267
BfrI CTTAAG 2 cut(s) 121, 217
BglI GCCNNNNNGGC 1 cut(s) 21
BisI GCNGC 1 cut(s) 283
BlsI GCNGC 1 cut(s) 284
Bme1390I CCNGG 1 cut(s) 574
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 2 cut(s) 55, 677
BmrFI CCNGG 1 cut(s) 574
BmsI GCATC 1 cut(s) 384
BoxI GACNNNNGTC 1 cut(s) 593
BpiI GAAGAC 1 cut(s) 589
BsaJI CCNNGG 1 cut(s) 573
BsaWI WCCGGW 2 cut(s) 415, 729
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 517, 574, 685
Bse1I ACTGG 1 cut(s) 154
BseAI TCCGGA 1 cut(s) 415
BseBI CCWGG 1 cut(s) 574
BseDI CCNNGG 1 cut(s) 573
BseGI GGATG 2 cut(s) 203, 699
BseLI CCNNNNNNNGG 4 cut(s) 37, 517, 574, 685
BseNI ACTGG 1 cut(s) 154
BseXI GCAGC 1 cut(s) 269
BsgI GTGCAG 1 cut(s) 104
Bsh1285I CGRYCG 1 cut(s) 734
BshFI GGCC 2 cut(s) 15, 678
BsiEI CGRYCG 1 cut(s) 734
BsiSI CCGG 2 cut(s) 416, 730
BslI CCNNNNNNNGG 4 cut(s) 37, 517, 574, 685
BsnI GGCC 2 cut(s) 15, 678
Bsp13I TCCGGA 1 cut(s) 415
Bsp1407I TGTACA 1 cut(s) 607
Bsp143I GATC 2 cut(s) 349, 688
BspANI GGCC 2 cut(s) 15, 678
BspEI TCCGGA 1 cut(s) 415
BspHI TCATGA 1 cut(s) 585
BspPI GGATC 1 cut(s) 696
BspTI CTTAAG 2 cut(s) 121, 217
BsrGI TGTACA 1 cut(s) 607
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 573
BssMI GATC 2 cut(s) 349, 688
Bst2UI CCWGG 1 cut(s) 574
Bst4CI ACNGT 2 cut(s) 526, 628
BstAFI CTTAAG 2 cut(s) 121, 217
BstAUI TGTACA 1 cut(s) 607
BstC8I GCNNGC 4 cut(s) 96, 268, 280, 676
BstEII GGTNACC 1 cut(s) 736
BstF5I GGATG 2 cut(s) 203, 699
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 2 cut(s) 352, 691
BstMBI GATC 2 cut(s) 349, 688
BstMCI CGRYCG 1 cut(s) 734
BstMWI GCNNNNNNNGC 3 cut(s) 21, 91, 263
BstNI CCWGG 1 cut(s) 574
BstPAI GACNNNNGTC 1 cut(s) 593
BstPI GGTNACC 1 cut(s) 736
BstSCI CCNGG 1 cut(s) 572
BstV1I GCAGC 1 cut(s) 269
BstV2I GAAGAC 1 cut(s) 589
BstXI CCANNNNNNTGG 1 cut(s) 541
BsuRI GGCC 2 cut(s) 15, 678
BtgZI GCGATG 3 cut(s) 75, 370, 782
BtsCI GGATG 2 cut(s) 203, 699
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 3 cut(s) 273, 481, 633
Cac8I GCNNGC 4 cut(s) 96, 268, 280, 676
CciI TCATGA 1 cut(s) 585
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 55, 677
CseI GACGC 2 cut(s) 166, 259
Csp6I GTAC 4 cut(s) 151, 342, 430, 608
CviAII CATG 2 cut(s) 35, 586
CviQI GTAC 4 cut(s) 151, 342, 430, 608
DpnI GATC 2 cut(s) 351, 690
DpnII GATC 2 cut(s) 349, 688
Eco147I AGGCCT 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 2 cut(s) 30, 672
Eco91I GGTNACC 1 cut(s) 736
EcoO65I GGTNACC 1 cut(s) 736
EcoRI GAATTC 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 572
FaeI CATG 2 cut(s) 38, 589
FatI CATG 2 cut(s) 34, 585
Fnu4HI GCNGC 1 cut(s) 283
FokI GGATG 2 cut(s) 190, 686
Fsp4HI GCNGC 1 cut(s) 283
FspBI CTAG 1 cut(s) 450
GlaI GCGC 1 cut(s) 265
GluI GCNGC 1 cut(s) 283
HaeII RGCGCY 1 cut(s) 267
HaeIII GGCC 2 cut(s) 15, 678
HapII CCGG 2 cut(s) 416, 730
HgaI GACGC 2 cut(s) 166, 259
HhaI GCGC 1 cut(s) 266
Hin1II CATG 2 cut(s) 38, 589
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HinfI GANTC 1 cut(s) 724
HpaII CCGG 2 cut(s) 416, 730
HphI GGTGA 1 cut(s) 730
Hpy166II GTNNAC 1 cut(s) 634
Hpy188I TCNGA 3 cut(s) 10, 173, 785
Hpy188III TCNNGA 3 cut(s) 131, 416, 586
Hpy8I GTNNAC 1 cut(s) 634
HpyAV CCTTC 3 cut(s) 5, 41, 217
HpyCH4III ACNGT 2 cut(s) 526, 628
HpyCH4IV ACGT 2 cut(s) 432, 594
HpyCH4V TGCA 7 cut(s) 63, 85, 98, 257, 285, 640, 674
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 91, 263
HpySE526I ACGT 2 cut(s) 432, 594
Hsp92II CATG 2 cut(s) 38, 589
HspAI GCGC 1 cut(s) 264
Kpn2I TCCGGA 1 cut(s) 415
Kzo9I GATC 2 cut(s) 349, 688
LmnI GCTCC 1 cut(s) 316
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 1 cut(s) 384
MaeI CTAG 1 cut(s) 450
MaeII ACGT 2 cut(s) 432, 594
MaeIII GTNAC 6 cut(s) 178, 271, 460, 622, 736, 771
MalI GATC 2 cut(s) 351, 690
MboI GATC 2 cut(s) 349, 688
MboII GAAGA 3 cut(s) 589, 676, 772
MluCI AATT 6 cut(s) 64, 126, 411, 535, 668, 692
MnlI CCTC 3 cut(s) 68, 103, 242
MroI TCCGGA 1 cut(s) 415
MseI TTAA 5 cut(s) 122, 218, 228, 369, 426
MslI CAYNNNNRTG 1 cut(s) 743
MspCI CTTAAG 2 cut(s) 121, 217
MspI CCGG 2 cut(s) 416, 730
MspR9I CCNGG 1 cut(s) 574
MvaI CCWGG 1 cut(s) 574
MwoI GCNNNNNNNGC 3 cut(s) 21, 91, 263
NdeII GATC 2 cut(s) 349, 688
NlaIII CATG 2 cut(s) 38, 589
NmuCI GTSAC 5 cut(s) 178, 271, 460, 622, 736
OliI CACNNNNGTG 1 cut(s) 743
PagI TCATGA 1 cut(s) 585
PceI AGGCCT 1 cut(s) 15
PfeI GAWTC 1 cut(s) 724
PflMI CCANNNNNTGG 1 cut(s) 517
PkrI GCNGC 1 cut(s) 284
PshAI GACNNNNGTC 1 cut(s) 593
Psp6I CCWGG 1 cut(s) 572
PspEI GGTNACC 1 cut(s) 736
PspGI CCWGG 1 cut(s) 572
PspPI GGNCC 2 cut(s) 55, 677
RsaI GTAC 4 cut(s) 152, 343, 431, 609
RsaNI GTAC 4 cut(s) 151, 342, 430, 608
RseI CAYNNNNRTG 1 cut(s) 743
SaqAI TTAA 5 cut(s) 122, 218, 228, 369, 426
SatI GCNGC 1 cut(s) 283
Sau3AI GATC 2 cut(s) 349, 688
Sau96I GGNCC 2 cut(s) 55, 677
ScrFI CCNGG 1 cut(s) 574
SetI ASST 9 cut(s) 150, 234, 435, 470, 517, 575, 597, 754, 778
SfaNI GCATC 1 cut(s) 384
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 743
SmlI CTYRAG 2 cut(s) 121, 217
SmoI CTYRAG 2 cut(s) 121, 217
Sse9I AATT 6 cut(s) 64, 126, 411, 535, 668, 692
SseBI AGGCCT 1 cut(s) 15
SspI AATATT 1 cut(s) 46
SspMI CTAG 1 cut(s) 450
StuI AGGCCT 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 572
TaaI ACNGT 2 cut(s) 526, 628
TaiI ACGT 2 cut(s) 435, 597
TaqII GACCGA 2 cut(s) 43, 724
TasI AATT 6 cut(s) 64, 126, 411, 535, 668, 692
TatI WGTACW 2 cut(s) 341, 607
TfiI GAWTC 1 cut(s) 724
Tru1I TTAA 5 cut(s) 122, 218, 228, 369, 426
Tru9I TTAA 5 cut(s) 122, 218, 228, 369, 426
TscAI CASTG 3 cut(s) 280, 481, 633
TseFI GTSAC 5 cut(s) 178, 271, 460, 622, 736
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 5 cut(s) 178, 271, 460, 622, 736
TspDTI ATGAA 2 cut(s) 23, 158
TspGWI ACGGA 2 cut(s) 319, 692
TspRI CASTG 3 cut(s) 280, 481, 633
Van91I CCANNNNNTGG 1 cut(s) 517
Vha464I CTTAAG 2 cut(s) 121, 217
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 2 cut(s) 126, 668
XspI CTAG 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.