RchiOBHm_Chr1g0334371

GABA transporter 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000597
Physical Location & Seq
Forward (+)
26564546 .. 26565703
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 756 bp
ATGATTGCAGGAAATTCCATGAATGCTCCTAGGAAGGACTATTCCTTAAATGGAAGCAAACAGAATCGCATTTTTGGATCCTTCAATGCTATTTCAATCATTGCTACCACGTACGGAAATGGCATTATTCCTGAAATACAGGCTACTATAGCACCGCCCGTCAAAGGAAAAATGTTCAAGGGATTATGTGTATGTTATGCTGTTGTACTTTCAACATTTTTCAGCGTTGCTATATCGGGATATTGGGCATTTGGTAATCAGGCCAAAGGTACAATTTTACTCAACTTTCTAGTTGATGAGAAGCCTCTGTTGCCGACTTGGATTCTCTTGATGACTAATGTCTTCACCTTCTTGCAAGTAGCAGCTGTTAGTGTGGTTTACTTACAACCAACAAATGAAGTGCTCGAACGCAAGTTTGTCAATGCCAAGATTGATCAGTTCTCTGTTCGAAATGTAGTGCCAAGGTTGGTTTATCGATCATTGTCTGTCGTGATAGCCACAACAGTTGCAGCTATGTTTCCTTTCTTTGGAGACATCAATGCTCTAATCGGAGCTTTTGGTTGCATTCCTCTCGACTTCATTTTGCCAATGGTGTTCTACAATGTTGTATTCAAGCCATCCAAGTACAGCCTTCTTTTCTGGGGAAACACAATAATTGCTTCCACCTTTTCAGCATTAGGAGTGTTGGGGGCAATATCTTCAATCCGTCAAATAATTCTTGATGCCAACACGTACAGTTTGTTTGCTAACGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

251

Amino Acids

27.47

Weight (kDa)

9.49

Isoelectric Point (pI)

17.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 12 - 239 7.5e-35 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000597)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G08230 AT1G08230 AT1G08230 AT1G08230 AT1G08230
fragaria_vesca FvH4_3g30140 FvH4_7g06340 FvH4_7g06350 FvH4_7g06350
malus_domestica MD02G1244800.v1.1 MD03G1133300.v1.1 MD07G1072100.v1.1 MD07G1072300.v1.1 MD11G1155800.v1.1 MD11G1156000.v1.1
prunus_persica Prupe.2G090300_v2.0.a1 Prupe.2G090500_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1 Prupe.6G118000_v2.0.a1
pyrus_communis pycom02g21070 pycom03g08970 pycom07g05520
rosa_chinensis RchiOBHm_Chr1g0334311 RchiOBHm_Chr1g0334341 RchiOBHm_Chr1g0334351 RchiOBHm_Chr1g0334371 RchiOBHm_Chr1g0334381 RchiOBHm_Chr1g0334431 RchiOBHm_Chr5g0055491 RchiOBHm_Chr5g0055511
rosa_laevigata RLG00000029454 RLG00000029457 RLG00000029458 RLG00000029459 RLG00000029461 RLG00000034991 RLG00000034993
rosa_multiflora Rmu_sc0001673.1_g000036 Rmu_sc0001673.1_g000040 Rmu_sc0016880.1_g000002 Rmu_ssc0000047.1_g000014 Rmu_ssc0000047.1_g000015 Rmu_ssc0000047.1_g000016 Rmu_ssc0000047.1_g000023
rosa_roxburghii Rroxscaffold_1G00024820 Rroxscaffold_1G00024850 Rroxscaffold_1G00024860 Rroxscaffold_4G00316880 Rroxscaffold_4G00316900
rosa_rugosa Rorug01G0113300.1 Rorug01G0113400 Rorug01G0113500 Rorug05G0293200 Rorug05G0293200 Rorug05G0293400.1
rosa_samantha Rh1AG138200 Rh1AG138300 Rh1AG139000 Rh1BG104900 Rh1CG130400 Rh1CG130500 Rh1CG131000 Rh1DG142700 Rh1DG142800 Rh5AG362800 Rh5AG363000 Rh5BG375000 Rh5BG375200 Rh5CG396900 Rh5CG397100 Rh5DG388300 Rh5DG388400
rosa_wichuraiana Rw0G003720 Rw0G003730 Rw0G003740 Rw1G011440 Rw1G011450 Rw5G034150 Rw5G034170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 155
AclWI GGATC 2 cut(s) 72, 85
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 5 cut(s) 113, 207, 271, 626, 734
AfiI CCNNNNNNNGG 2 cut(s) 164, 527
AflIII ACRYGT 1 cut(s) 729
AgsI TTSAA 6 cut(s) 85, 96, 178, 213, 613, 702
AluBI AGCT 3 cut(s) 365, 512, 554
AluI AGCT 3 cut(s) 365, 512, 554
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 1 cut(s) 525
AlwI GGATC 2 cut(s) 72, 85
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 2 cut(s) 362, 509
ApoI RAATTY 1 cut(s) 13
AspA2I CCTAGG 1 cut(s) 29
AsuHPI GGTGA 1 cut(s) 337
AsuII TTCGAA 1 cut(s) 448
AvrII CCTAGG 1 cut(s) 29
BamHI GGATCC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 2 cut(s) 374, 521
BccI CCATC 1 cut(s) 625
BcgI CGANNNNNNTGC 2 cut(s) 553, 587
BclI TGATCA 1 cut(s) 433
BcoDI GTCTC 1 cut(s) 525
BfaI CTAG 2 cut(s) 30, 290
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 2 cut(s) 363, 510
BlnI CCTAGG 1 cut(s) 29
BlsI GCNGC 2 cut(s) 364, 511
BmiI GGNNCC 1 cut(s) 79
BmsI GCATC 1 cut(s) 712
BoxI GACNNNNGTC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 334
Bpu14I TTCGAA 1 cut(s) 448
Bsa29I ATCGAT 1 cut(s) 475
BsaAI YACGTR 2 cut(s) 111, 732
BsaJI CCNNGG 2 cut(s) 29, 461
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 527
Bse3DI GCAATG 1 cut(s) 99
BseCI ATCGAT 1 cut(s) 475
BseDI CCNNGG 2 cut(s) 29, 461
BseGI GGATG 1 cut(s) 617
BseLI CCNNNNNNNGG 2 cut(s) 164, 527
BseMI GCAATG 1 cut(s) 99
BseXI GCAGC 2 cut(s) 374, 521
BshFI GGCC 1 cut(s) 263
BshVI ATCGAT 1 cut(s) 475
BsiHKAI GWGCWC 1 cut(s) 405
BsiWI CGTACG 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 164, 527
BsmAI GTCTC 1 cut(s) 525
BsmI GAATGC 2 cut(s) 28, 564
BsnI GGCC 1 cut(s) 263
Bsp119I TTCGAA 1 cut(s) 448
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 3 cut(s) 77, 433, 476
BspACI CCGC 1 cut(s) 155
BspANI GGCC 1 cut(s) 263
BspDI ATCGAT 1 cut(s) 475
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 2 cut(s) 72, 85
BspT104I TTCGAA 1 cut(s) 448
BsrDI GCAATG 1 cut(s) 99
BssECI CCNNGG 2 cut(s) 29, 461
BssMI GATC 3 cut(s) 77, 433, 476
BssT1I CCWWGG 2 cut(s) 29, 461
Bst4CI ACNGT 2 cut(s) 505, 737
BstBAI YACGTR 2 cut(s) 111, 732
BstBI TTCGAA 1 cut(s) 448
BstF5I GGATG 1 cut(s) 617
BstKTI GATC 3 cut(s) 80, 436, 479
BstMAI GTCTC 1 cut(s) 525
BstMBI GATC 3 cut(s) 77, 433, 476
BstMWI GCNNNNNNNGC 2 cut(s) 149, 310
BstPAI GACNNNNGTC 1 cut(s) 338
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 374, 521
BstV2I GAAGAC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
Bsu15I ATCGAT 1 cut(s) 475
BsuRI GGCC 1 cut(s) 263
BsuTUI ATCGAT 1 cut(s) 475
BtsCI GGATG 1 cut(s) 617
ClaI ATCGAT 1 cut(s) 475
Csp6I GTAC 5 cut(s) 112, 206, 270, 625, 733
CspCI CAANNNNNGTGG 2 cut(s) 487, 522
CviAII CATG 1 cut(s) 19
CviJI RGCY 9 cut(s) 143, 263, 304, 365, 497, 512, 554, 616, 630
CviKI_1 RGCY 9 cut(s) 143, 263, 304, 365, 497, 512, 554, 616, 630
CviQI GTAC 5 cut(s) 112, 206, 270, 625, 733
DpnI GATC 3 cut(s) 79, 435, 478
DpnII GATC 3 cut(s) 77, 433, 476
Eco130I CCWWGG 2 cut(s) 29, 461
EcoT14I CCWWGG 2 cut(s) 29, 461
ErhI CCWWGG 2 cut(s) 29, 461
FaeI CATG 1 cut(s) 22
FaiI YATR 8 cut(s) 20, 149, 187, 193, 198, 233, 515, 754
FatI CATG 1 cut(s) 18
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 2 cut(s) 363, 510
FokI GGATG 1 cut(s) 604
Fsp4HI GCNGC 2 cut(s) 363, 510
FspBI CTAG 2 cut(s) 30, 290
GluI GCNGC 2 cut(s) 363, 510
HaeIII GGCC 1 cut(s) 263
Hin1II CATG 1 cut(s) 22
HinfI GANTC 2 cut(s) 64, 322
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 1 cut(s) 551
Hpy188III TCNNGA 6 cut(s) 131, 237, 328, 490, 572, 719
Hpy8I GTNNAC 1 cut(s) 379
HpyAV CCTTC 4 cut(s) 28, 91, 358, 641
HpyCH4III ACNGT 2 cut(s) 505, 737
HpyCH4IV ACGT 3 cut(s) 110, 731, 750
HpyCH4V TGCA 4 cut(s) 8, 355, 509, 564
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 310
HpySE526I ACGT 3 cut(s) 110, 731, 750
Hsp92II CATG 1 cut(s) 22
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 3 cut(s) 77, 433, 476
LmnI GCTCC 2 cut(s) 31, 551
LpnPI CCDG 4 cut(s) 125, 144, 245, 625
Lsp1109I GCAGC 2 cut(s) 374, 521
LweI GCATC 1 cut(s) 712
MaeI CTAG 2 cut(s) 30, 290
MaeII ACGT 3 cut(s) 110, 731, 750
MalI GATC 3 cut(s) 79, 435, 478
MboI GATC 3 cut(s) 77, 433, 476
MboII GAAGA 2 cut(s) 334, 690
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 4 cut(s) 13, 273, 654, 714
MnlI CCTC 2 cut(s) 315, 579
MseI TTAA 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 365
Mva1269I GAATGC 2 cut(s) 28, 564
MwoI GCNNNNNNNGC 2 cut(s) 149, 310
NdeII GATC 3 cut(s) 77, 433, 476
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 79
NspV TTCGAA 1 cut(s) 448
PctI GAATGC 2 cut(s) 28, 564
PfeI GAWTC 2 cut(s) 64, 322
Pfl23II CGTACG 1 cut(s) 111
PkrI GCNGC 2 cut(s) 364, 511
Ppu21I YACGTR 2 cut(s) 111, 732
PshAI GACNNNNGTC 1 cut(s) 338
PspLI CGTACG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 79
PsuI RGATCY 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 5 cut(s) 113, 207, 271, 626, 734
RsaNI GTAC 5 cut(s) 112, 206, 270, 625, 733
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 2 cut(s) 363, 510
Sau3AI GATC 3 cut(s) 77, 433, 476
SduI GDGCHC 1 cut(s) 405
SfaNI GCATC 1 cut(s) 712
SfcI CTRYAG 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 448
Sse9I AATT 4 cut(s) 13, 273, 654, 714
SsiI CCGC 1 cut(s) 155
SspMI CTAG 2 cut(s) 30, 290
StyI CCWWGG 2 cut(s) 29, 461
TaaI ACNGT 2 cut(s) 505, 737
TaiI ACGT 3 cut(s) 113, 734, 753
TaqI TCGA 4 cut(s) 405, 448, 475, 573
TasI AATT 4 cut(s) 13, 273, 654, 714
TatI WGTACW 2 cut(s) 205, 624
TfiI GAWTC 2 cut(s) 64, 322
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TseI GCWGC 2 cut(s) 362, 509
TspDTI ATGAA 3 cut(s) 35, 411, 568
TspGWI ACGGA 2 cut(s) 129, 695
XapI RAATTY 1 cut(s) 13
XmaJI CCTAGG 1 cut(s) 29
XspI CTAG 2 cut(s) 30, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.