Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Reverse (-)

20087103 .. 20089403

Gene Structure 2301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55954

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCTGAATTCTGAAACTCTTACTGCAATTACCAAATATTTGGATATGGGCACATGCAGTGAGTGGGATGAAGAAAAGAAACTGGAATTTCTAACAAGAGAGCTCAAAGGAAAAAGACTGCTAGTCCCACCTAGCATGGAGGGTACTCTACGATCAACTGAGCAAGGAGAAATGGTACAGTCAAAATTTGGGCAGTCGATCACAGATTGCACTCAGACAGCTGGAGGTGTATTGCTTGCAACGTTGCATCCACCACACCCTCCTCAAGAACAAAAGTGTAGTCTCATGGAGGAGATCTCAAAGATCAGTTGTCAGAATTACTGGAGCGTAGTCTACAAAAATCCAGAATTCCTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

119

Amino Acids

13.46

Weight (kDa)

5.18

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	45 - 118	4.3e-12	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	333
AclI	AACGTT	1 cut(s)	242
AcsI	RAATTY	4 cut(s)	7, 86, 185, 347
AfaI	GTAC	2 cut(s)	145, 177
AhdI	GACNNNNNGTC	1 cut(s)	122
AluBI	AGCT	2 cut(s)	103, 221
AluI	AGCT	2 cut(s)	103, 221
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	287
ApoI	RAATTY	4 cut(s)	7, 86, 185, 347
ArsI	GACNNNNNNTTYG	2 cut(s)	265, 297
BaeGI	GKGCMC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	2 cut(s)	122, 132
BglII	AGATCT	1 cut(s)	294
BmeRI	GACNNNNNGTC	1 cut(s)	122
BmsI	GCATC	1 cut(s)	256
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpmI	CTGGAG	2 cut(s)	243, 343
BpuEI	CTTGAG	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bse1I	ACTGG	2 cut(s)	87, 326
BseGI	GGATG	2 cut(s)	73, 247
BseMII	CTCAG	2 cut(s)	150, 227
BseNI	ACTGG	2 cut(s)	87, 326
BseRI	GAGGAG	2 cut(s)	252, 305
BseSI	GKGCMC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	53, 105
Bsp143I	GATC	4 cut(s)	152, 198, 294, 303
BspCNI	CTCAG	2 cut(s)	151, 226
BsrI	ACTGG	2 cut(s)	87, 326
BssMI	GATC	4 cut(s)	152, 198, 294, 303
Bst4CI	ACNGT	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	159, 213
BstF5I	GGATG	2 cut(s)	73, 247
BstKTI	GATC	4 cut(s)	155, 201, 297, 306
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	4 cut(s)	152, 198, 294, 303
BstNSI	RCATGY	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	294
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	73, 247
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	237
Csp6I	GTAC	2 cut(s)	144, 176
CviAII	CATG	3 cut(s)	54, 136, 286
CviJI	RGCY	2 cut(s)	103, 221
CviKI_1	RGCY	2 cut(s)	103, 221
CviQI	GTAC	2 cut(s)	144, 176
DdeI	CTNAG	2 cut(s)	159, 213
DpnI	GATC	4 cut(s)	154, 200, 296, 305
DpnII	GATC	4 cut(s)	152, 198, 294, 303
DriI	GACNNNNNGTC	1 cut(s)	122
Eam1105I	GACNNNNNGTC	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	103
EcoRI	GAATTC	2 cut(s)	7, 347
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	3 cut(s)	57, 139, 289
FaiI	YATR	4 cut(s)	47, 55, 137, 287
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	3 cut(s)	53, 135, 285
FblI	GTMKAC	1 cut(s)	333
FokI	GGATG	2 cut(s)	80, 234
FriOI	GRGCYC	1 cut(s)	105
FspBI	CTAG	2 cut(s)	122, 132
GsuI	CTGGAG	2 cut(s)	243, 343
Hin1II	CATG	3 cut(s)	57, 139, 289
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	3 cut(s)	13, 216, 315
Hpy188III	TCNNGA	2 cut(s)	266, 344
Hpy8I	GTNNAC	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	5 cut(s)	26, 57, 210, 239, 247
HpyF3I	CTNAG	2 cut(s)	159, 213
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	3 cut(s)	57, 139, 289
Kzo9I	GATC	4 cut(s)	152, 198, 294, 303
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	3 cut(s)	68, 207, 307
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	122, 132
MaeII	ACGT	1 cut(s)	242
MalI	GATC	4 cut(s)	154, 200, 296, 305
MboI	GATC	4 cut(s)	152, 198, 294, 303
MboII	GAAGA	1 cut(s)	83
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	2 cut(s)	53, 105
MluCI	AATT	6 cut(s)	7, 27, 86, 185, 316, 347
MnlI	CCTC	5 cut(s)	133, 218, 270, 273, 283
MseI	TTAA	1 cut(s)	358
MspA1I	CMGCKG	1 cut(s)	221
NdeII	GATC	4 cut(s)	152, 198, 294, 303
NlaIII	CATG	3 cut(s)	57, 139, 289
NspI	RCATGY	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	105
Psp1406I	AACGTT	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	294
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	2 cut(s)	145, 177
RsaNI	GTAC	2 cut(s)	144, 176
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	358
Sau3AI	GATC	4 cut(s)	152, 198, 294, 303
SduI	GDGCHC	2 cut(s)	53, 105
SetI	ASST	5 cut(s)	105, 133, 223, 229, 245
SfaNI	GCATC	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
Sse9I	AATT	6 cut(s)	7, 27, 86, 185, 316, 347
SspI	AATATT	1 cut(s)	38
SspMI	CTAG	2 cut(s)	122, 132
SstI	GAGCTC	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	180
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	1 cut(s)	197
TasI	AATT	6 cut(s)	7, 27, 86, 185, 316, 347
Tru1I	TTAA	1 cut(s)	358
Tru9I	TTAA	1 cut(s)	358
TscAI	CASTG	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	64
XapI	RAATTY	4 cut(s)	7, 86, 185, 347
XceI	RCATGY	1 cut(s)	57
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	2 cut(s)	122, 132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.