Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Forward (+)

30196355 .. 30197488

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0294000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGATCAAGCAGTTTGGTCTTTAAGCTCTTCTGGTCAACTTAATGCGAGGGATGCATACTGTTTTATTGCGCCTCCTGGCTTTCAGGTGAATTGGGGTTCTCTGATTTGGCATAAATCTATTCCACCAAGGAGAAGTTTGGTGGCCTGGCAGGTCTTCCACGGGAGGCTAAAAACAGATTTCTATCTGCAAAAAATTGGGATTAATCTCTGCTTACAATGTTCTTTTTGCTTTAGAGATTCTGAATCAGTCTCACATCTATTCTGGAATTGTGATGTTATTCGTCAGGTTTGGCTGTGGACTTTCTCATTATTTCGTATTCTCCCTCCACAGGATGCATCACTGCATTATGTTCTATCTCCAGAGTTAATGAGCCGCCTTTCAGTGGCGTCACGTGAGCTATGGCGCATTTCAGTGTGTACACTTCTATGGTGTATATGGACAGAACGCAACAAAGTAAGAAACAATGATTTAAAGTTCAATTTCTTGCGTTTCCAGCAATACTTCTTTCTTGCCTTCAAAGAAGGAGCCCAATTAAGTTTCAAGCCGTGTTTATCTTCGTATAATGGTTTACCAGCTTTCACTCTTTTGGGAATTTCACCATTACGTTGCTCTGCTCCCATTTTTAAATTGGTGAAGTGGCAGCCTTCTCCTGAGCAATGGTTAAAGGTAAATACAGATGGGTCCTTCAGGAGCCCGAATTTAGGTGGATCAGGGGGTATTTTCAGAAATGCTAATGGTCATTTTTCTGGTGCTTTCTCTTTCAATGTTAATGTGCCAAGTGCCATTGATGCTGAGGTCTTAGCAATGATTGAGGCAATCCGGGTGGCTTGGGTCAAAAATTGGACTCATATTTGGCTAGAAACTGACTCAATACTTGTGGTCCATTACTTTAGGTCTCCAAATCTAATTCCTTGGAGGCTTCGTAATCAGTGGCTAAACTGTCTTCACCAGGCTAGTCAATTAAACTTTCGTGTTTCTCATATTTATAGAGAAGGCAATATGGTTGCAGACAAGCTGGCAAACTTTGGTGTCTCCAATAAGGGTGGGGTTTGGTGGCTCACCATCCCATCTTTTTTGAAAGAAGCTTTTGATCAGGATTTATCCACAAGACCTGCGTATCGTTTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

377

Amino Acids

43.57

Weight (kDa)

9.5

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	17 - 98	5.1e-17	zinc-binding in reverse transcriptase
RVT_3	PF13456	225 - 343	8.4e-19	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	142, 1123
AciI	CCGC	1 cut(s)	376
AclWI	GGATC	2 cut(s)	12, 718
AcsI	RAATTY	2 cut(s)	594, 700
AcuI	CTGAAG	1 cut(s)	673
AcvI	CACGTG	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	389
AfaI	GTAC	1 cut(s)	421
AfiI	CCNNNNNNNGG	3 cut(s)	331, 385, 704
AgsI	TTSAA	5 cut(s)	481, 520, 544, 766, 1081
AjnI	CCWGG	3 cut(s)	76, 146, 951
AluBI	AGCT	5 cut(s)	27, 400, 578, 1018, 1088
AluI	AGCT	5 cut(s)	27, 400, 578, 1018, 1088
Alw26I	GTCTC	3 cut(s)	256, 903, 1039
AlwI	GGATC	2 cut(s)	12, 718
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	643
ApoI	RAATTY	2 cut(s)	594, 700
AseI	ATTAAT	1 cut(s)	204
AspLEI	GCGC	2 cut(s)	73, 408
AspS9I	GGNCC	2 cut(s)	684, 883
AsuC2I	CCSGG	1 cut(s)	824
AsuHPI	GGTGA	5 cut(s)	100, 591, 646, 941, 1054
AvaII	GGWCC	2 cut(s)	684, 883
BaeI	ACNNNNGTAYC	1 cut(s)	1103
BanII	GRGCYC	2 cut(s)	532, 698
BbrPI	CACGTG	1 cut(s)	395
BbsI	GAAGAC	2 cut(s)	148, 938
BbvCI	CCTCAGC	1 cut(s)	795
BbvI	GCAGC	1 cut(s)	655
BccI	CCATC	3 cut(s)	674, 1073, 1078
BceAI	ACGGC	1 cut(s)	532
BciT130I	CCWGG	3 cut(s)	78, 148, 953
BclI	TGATCA	1 cut(s)	1093
BcnI	CCSGG	1 cut(s)	824
BcoDI	GTCTC	3 cut(s)	256, 903, 1039
BfaI	CTAG	2 cut(s)	860, 957
BfuAI	ACCTGC	2 cut(s)	142, 1123
BisI	GCNGC	2 cut(s)	376, 644
BlsI	GCNGC	2 cut(s)	377, 645
Bme1390I	CCNGG	4 cut(s)	78, 148, 824, 953
Bme18I	GGWCC	2 cut(s)	684, 883
BmgT120I	GGNCC	2 cut(s)	684, 883
BmiI	GGNNCC	3 cut(s)	529, 685, 695
BmrFI	CCNGG	4 cut(s)	78, 148, 824, 953
BmsI	GCATC	4 cut(s)	43, 325, 347, 781
BpiI	GAAGAC	2 cut(s)	148, 938
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	2 cut(s)	654, 795
BpuMI	CCSGG	1 cut(s)	824
BsaAI	YACGTR	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	389
BsaI	GGTCTC	1 cut(s)	903
BsaJI	CCNNGG	3 cut(s)	128, 160, 914
BsaXI	ACNNNNNCTCC	2 cut(s)	910, 940
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 385, 704
Bse3DI	GCAATG	2 cut(s)	665, 813
Bse8I	GATNNNNATC	1 cut(s)	183
BseBI	CCWGG	3 cut(s)	78, 148, 953
BseDI	CCNNGG	3 cut(s)	128, 160, 914
BseGI	GGATG	3 cut(s)	58, 340, 1065
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	3 cut(s)	331, 385, 704
BseMI	GCAATG	2 cut(s)	665, 813
BseMII	CTCAG	2 cut(s)	645, 786
BseXI	GCAGC	1 cut(s)	655
BshFI	GGCC	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	823
BslI	CCNNNNNNNGG	3 cut(s)	331, 385, 704
BsmAI	GTCTC	3 cut(s)	256, 903, 1039
BsnI	GGCC	1 cut(s)	146
Bso31I	GGTCTC	1 cut(s)	903
Bsp1286I	GDGCHC	2 cut(s)	532, 698
Bsp1407I	TGTACA	1 cut(s)	419
Bsp143I	GATC	3 cut(s)	4, 710, 1093
BspACI	CCGC	1 cut(s)	376
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	2 cut(s)	646, 787
BspLI	GGNNCC	3 cut(s)	529, 685, 695
BspMI	ACCTGC	2 cut(s)	142, 1123
BspPI	GGATC	2 cut(s)	12, 718
BspQI	GCTCTTC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	903
BsrDI	GCAATG	2 cut(s)	665, 813
BsrGI	TGTACA	1 cut(s)	419
BssECI	CCNNGG	3 cut(s)	128, 160, 914
BssMI	GATC	3 cut(s)	4, 710, 1093
BssNI	GRCGYC	1 cut(s)	389
BssT1I	CCWWGG	2 cut(s)	128, 914
Bst2UI	CCWGG	3 cut(s)	78, 148, 953
Bst4CI	ACNGT	2 cut(s)	62, 944
Bst6I	CTCTTC	1 cut(s)	34
BstACI	GRCGYC	1 cut(s)	389
BstAUI	TGTACA	1 cut(s)	419
BstBAI	YACGTR	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	1020
BstDEI	CTNAG	4 cut(s)	654, 795, 802, 1131
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	3 cut(s)	58, 340, 1065
BstHHI	GCGC	2 cut(s)	73, 408
BstKTI	GATC	3 cut(s)	7, 713, 1096
BstMAI	GTCTC	3 cut(s)	256, 903, 1039
BstMBI	GATC	3 cut(s)	4, 710, 1093
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 496, 791
BstNI	CCWGG	3 cut(s)	78, 148, 953
BstSCI	CCNGG	4 cut(s)	76, 146, 822, 951
BstV1I	GCAGC	1 cut(s)	655
BstV2I	GAAGAC	2 cut(s)	148, 938
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	3 cut(s)	58, 340, 1065
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	4 cut(s)	341, 390, 420, 938
BveI	ACCTGC	2 cut(s)	142, 1123
Cac8I	GCNNGC	1 cut(s)	1020
CfoI	GCGC	2 cut(s)	73, 408
Cfr13I	GGNCC	2 cut(s)	684, 883
CseI	GACGC	1 cut(s)	378
Csp6I	GTAC	1 cut(s)	420
CspCI	CAANNNNNGTGG	6 cut(s)	807, 842, 861, 896, 1027, 1062
CviQI	GTAC	1 cut(s)	420
DdeI	CTNAG	4 cut(s)	654, 795, 802, 1131
DpnI	GATC	3 cut(s)	6, 712, 1095
DpnII	GATC	3 cut(s)	4, 710, 1093
DraI	TTTAAA	2 cut(s)	474, 628
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	128, 914
Eco24I	GRGCYC	2 cut(s)	532, 698
Eco31I	GGTCTC	1 cut(s)	903
Eco47I	GGWCC	2 cut(s)	684, 883
Eco57I	CTGAAG	1 cut(s)	673
Eco72I	CACGTG	1 cut(s)	395
EcoO109I	RGGNCCY	1 cut(s)	684
EcoRII	CCWGG	3 cut(s)	76, 146, 951
EcoT14I	CCWWGG	2 cut(s)	128, 914
EcoT22I	ATGCAT	2 cut(s)	58, 340
EcoT38I	GRGCYC	2 cut(s)	532, 698
ErhI	CCWWGG	2 cut(s)	128, 914
FbaI	TGATCA	1 cut(s)	1093
Fnu4HI	GCNGC	2 cut(s)	376, 644
FokI	GGATG	3 cut(s)	65, 347, 1052
FriOI	GRGCYC	2 cut(s)	532, 698
Fsp4HI	GCNGC	2 cut(s)	376, 644
FspBI	CTAG	2 cut(s)	860, 957
GlaI	GCGC	2 cut(s)	72, 407
GluI	GCNGC	2 cut(s)	376, 644
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	1 cut(s)	823
HgaI	GACGC	1 cut(s)	378
HhaI	GCGC	2 cut(s)	73, 408
Hin1I	GRCGYC	1 cut(s)	389
Hin6I	GCGC	2 cut(s)	71, 406
HinP1I	GCGC	2 cut(s)	71, 406
HincII	GTYRAC	1 cut(s)	38
HindII	GTYRAC	1 cut(s)	38
HindIII	AAGCTT	1 cut(s)	1086
HinfI	GANTC	4 cut(s)	239, 245, 847, 869
HpaII	CCGG	1 cut(s)	823
HphI	GGTGA	5 cut(s)	100, 591, 646, 941, 1054
Hpy166II	GTNNAC	5 cut(s)	38, 300, 420, 422, 572
Hpy188I	TCNGA	3 cut(s)	105, 244, 728
Hpy188III	TCNNGA	5 cut(s)	265, 362, 653, 691, 1097
Hpy8I	GTNNAC	5 cut(s)	38, 300, 420, 422, 572
HpyAV	CCTTC	5 cut(s)	518, 526, 657, 697, 989
HpyCH4III	ACNGT	2 cut(s)	62, 944
HpyCH4IV	ACGT	2 cut(s)	394, 607
HpyCH4V	TGCA	5 cut(s)	56, 190, 338, 346, 1010
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 496, 791
HpyF3I	CTNAG	4 cut(s)	654, 795, 802, 1131
HpySE526I	ACGT	2 cut(s)	394, 607
Hsp92I	GRCGYC	1 cut(s)	389
HspAI	GCGC	2 cut(s)	71, 406
Ksp22I	TGATCA	1 cut(s)	1093
Kzo9I	GATC	3 cut(s)	4, 710, 1093
LguI	GCTCTTC	1 cut(s)	34
LmnI	GCTCC	3 cut(s)	527, 622, 693
Lsp1109I	GCAGC	1 cut(s)	655
LweI	GCATC	4 cut(s)	43, 325, 347, 781
MaeI	CTAG	2 cut(s)	860, 957
MaeII	ACGT	2 cut(s)	394, 607
MaeIII	GTNAC	1 cut(s)	390
MalI	GATC	3 cut(s)	6, 712, 1095
MboI	GATC	3 cut(s)	4, 710, 1093
MboII	GAAGA	4 cut(s)	21, 148, 549, 938
MhlI	GDGCHC	2 cut(s)	532, 698
MlyI	GAGTC	2 cut(s)	841, 863
MnlI	CCTC	7 cut(s)	42, 84, 159, 336, 790, 808, 912
Mph1103I	ATGCAT	2 cut(s)	58, 340
MslI	CAYNNNNRTG	2 cut(s)	413, 427
MspI	CCGG	1 cut(s)	823
MspR9I	CCNGG	4 cut(s)	78, 148, 824, 953
MvaI	CCWGG	3 cut(s)	78, 148, 953
MwoI	GCNNNNNNNGC	3 cut(s)	53, 496, 791
NciI	CCSGG	1 cut(s)	824
NdeII	GATC	3 cut(s)	4, 710, 1093
NlaIV	GGNNCC	3 cut(s)	529, 685, 695
NmuCI	GTSAC	1 cut(s)	390
NsiI	ATGCAT	2 cut(s)	58, 340
PciSI	GCTCTTC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	239, 245
PkrI	GCNGC	2 cut(s)	377, 645
PleI	GAGTC	2 cut(s)	841, 863
PmaCI	CACGTG	1 cut(s)	395
PmlI	CACGTG	1 cut(s)	395
PpsI	GAGTC	2 cut(s)	841, 863
Ppu21I	YACGTR	1 cut(s)	395
PpuMI	RGGWCCY	1 cut(s)	684
PshBI	ATTAAT	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	684
Psp6I	CCWGG	3 cut(s)	76, 146, 951
PspCI	CACGTG	1 cut(s)	395
PspGI	CCWGG	3 cut(s)	76, 146, 951
PspN4I	GGNNCC	3 cut(s)	529, 685, 695
PspPI	GGNCC	2 cut(s)	684, 883
PspPPI	RGGWCCY	1 cut(s)	684
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
RseI	CAYNNNNRTG	2 cut(s)	413, 427
SapI	GCTCTTC	1 cut(s)	34
SatI	GCNGC	2 cut(s)	376, 644
Sau3AI	GATC	3 cut(s)	4, 710, 1093
Sau96I	GGNCC	2 cut(s)	684, 883
SchI	GAGTC	2 cut(s)	841, 863
ScrFI	CCNGG	4 cut(s)	78, 148, 824, 953
SduI	GDGCHC	2 cut(s)	532, 698
SfaNI	GCATC	4 cut(s)	43, 325, 347, 781
SinI	GGWCC	2 cut(s)	684, 883
SmiMI	CAYNNNNRTG	2 cut(s)	413, 427
SsiI	CCGC	1 cut(s)	376
SspMI	CTAG	2 cut(s)	860, 957
StyD4I	CCNGG	4 cut(s)	76, 146, 822, 951
StyI	CCWWGG	2 cut(s)	128, 914
TaaI	ACNGT	2 cut(s)	62, 944
TaiI	ACGT	2 cut(s)	397, 610
TatI	WGTACW	1 cut(s)	419
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	2 cut(s)	239, 245
TscAI	CASTG	4 cut(s)	348, 390, 420, 938
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	1 cut(s)	643
Tsp45I	GTSAC	1 cut(s)	390
TspRI	CASTG	4 cut(s)	348, 390, 420, 938
VpaK11BI	GGWCC	2 cut(s)	684, 883
VspI	ATTAAT	1 cut(s)	204
XapI	RAATTY	2 cut(s)	594, 700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	628
XspI	CTAG	2 cut(s)	860, 957
Zsp2I	ATGCAT	2 cut(s)	58, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.