Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Forward (+)

29388503 .. 29390612

Gene Structure 2110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31436

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCATGATGATGGAGTTCCATGCATCTCCTCATCAACTTCTGATGTTAAAGAAGTACTGGATAGCTTCCGCATTGCTGCTAAGCTAGGGAGTGATTCGCTTGGAGCATATGTGATTTCTATGGCTTCTCACGCAAGTGACATCCTTACTGTGGAGCTTTTGCAAAAAGATGCACGACTTGCTGTTAGTGGACAGATAGGAAAGCCATGCCCTGGTGGAACGCTGCGTGTGGTTCCTTTGTTTGAAACTGTAAAGGACTTGAGAGGAGCTGGCTCAATGATCAGGAAATTATTGTCCATTGATTGGTACAGGGAGCACATCATCAAGAACCATAATGGGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

114

Amino Acids

12.31

Weight (kDa)

6.96

Isoelectric Point (pI)

30.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	13 - 109	1.5e-23	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	212, 303
AciI	CCGC	1 cut(s)	70
AfaI	GTAC	2 cut(s)	57, 308
AfiI	CCNNNNNNNGG	3 cut(s)	151, 212, 303
AgsI	TTSAA	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	211
AleI	CACNNNNGTG	1 cut(s)	135
AluBI	AGCT	4 cut(s)	66, 85, 157, 269
AluI	AGCT	4 cut(s)	66, 85, 157, 269
Alw21I	GWGCWC	1 cut(s)	318
ApeKI	GCWGC	2 cut(s)	77, 223
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	64, 210
BccI	CCATC	1 cut(s)	5
BciT130I	CCWGG	1 cut(s)	213
BclI	TGATCA	1 cut(s)	279
BfaI	CTAG	1 cut(s)	86
BisI	GCNGC	2 cut(s)	78, 224
BlpI	GCTNAGC	1 cut(s)	81
BlsI	GCNGC	2 cut(s)	79, 225
BmcAI	AGTACT	1 cut(s)	57
Bme1390I	CCNGG	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	2 cut(s)	33, 160
Bpu1102I	GCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 212, 303
Bse1I	ACTGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	3 cut(s)	151, 212, 303
BseMI	GCAATG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	2 cut(s)	19, 279
BseXI	GCAGC	2 cut(s)	64, 210
BsiHKAI	GWGCWC	1 cut(s)	318
BslI	CCNNNNNNNGG	3 cut(s)	151, 212, 303
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	279
Bsp1720I	GCTNAGC	1 cut(s)	81
BspACI	CCGC	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	151, 250
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	141
BstKTI	GATC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 179
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstV1I	GCAGC	2 cut(s)	64, 210
BtsCI	GGATG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	271
Csp6I	GTAC	2 cut(s)	56, 307
CviAII	CATG	3 cut(s)	5, 21, 207
CviJI	RGCY	7 cut(s)	66, 85, 125, 157, 205, 269, 273
CviKI_1	RGCY	7 cut(s)	66, 85, 125, 157, 205, 269, 273
CviQI	GTAC	2 cut(s)	56, 307
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	211
EcoT22I	ATGCAT	2 cut(s)	6, 26
FaeI	CATG	3 cut(s)	8, 24, 210
FaiI	YATR	7 cut(s)	6, 22, 109, 111, 122, 208, 333
FatI	CATG	3 cut(s)	4, 20, 206
FauNDI	CATATG	1 cut(s)	109
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	78, 224
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	2 cut(s)	78, 224
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	2 cut(s)	78, 224
Hin1II	CATG	3 cut(s)	8, 24, 210
HinfI	GANTC	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	2 cut(s)	283, 325
Hpy8I	GTNNAC	1 cut(s)	191
HpyCH4III	ACNGT	2 cut(s)	151, 250
HpyCH4V	TGCA	4 cut(s)	4, 24, 163, 173
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 179
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	8, 24, 210
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	4 cut(s)	104, 154, 266, 313
LpnPI	CCDG	6 cut(s)	44, 198, 225, 255, 268, 295
Lsp1109I	GCAGC	2 cut(s)	64, 210
LweI	GCATC	2 cut(s)	33, 160
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	1 cut(s)	287
MnlI	CCTC	2 cut(s)	40, 257
Mph1103I	ATGCAT	2 cut(s)	6, 26
MseI	TTAA	2 cut(s)	48, 343
MslI	CAYNNNNRTG	2 cut(s)	9, 135
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	131, 179
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	1 cut(s)	279
NlaIII	CATG	3 cut(s)	8, 24, 210
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	137
NsiI	ATGCAT	2 cut(s)	6, 26
OliI	CACNNNNGTG	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	95
PflMI	CCANNNNNTGG	2 cut(s)	212, 303
PkrI	GCNGC	2 cut(s)	79, 225
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	234
RsaI	GTAC	2 cut(s)	57, 308
RsaNI	GTAC	2 cut(s)	56, 307
RseI	CAYNNNNRTG	2 cut(s)	9, 135
SaqAI	TTAA	2 cut(s)	48, 343
SatI	GCNGC	2 cut(s)	78, 224
Sau3AI	GATC	1 cut(s)	279
ScaI	AGTACT	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	4 cut(s)	68, 87, 159, 271
SfaNI	GCATC	2 cut(s)	33, 160
SmiMI	CAYNNNNRTG	2 cut(s)	9, 135
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	2 cut(s)	151, 250
TasI	AATT	1 cut(s)	287
TatI	WGTACW	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	2 cut(s)	48, 343
Tru9I	TTAA	2 cut(s)	48, 343
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	2 cut(s)	77, 223
Tsp45I	GTSAC	1 cut(s)	137
Van91I	CCANNNNNTGG	2 cut(s)	212, 303
XspI	CTAG	1 cut(s)	86
ZrmI	AGTACT	1 cut(s)	57
Zsp2I	ATGCAT	2 cut(s)	6, 26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.