Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Forward (+)

29475359 .. 29485031

Gene Structure 9673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG253900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGACATTTATATTGGAAGTACTGGATACTGTCCGCATTGCTGCTGAGCTAGGGAGTGATTTGCTTGGAGCATATGTGATTTCTATGGCTTCTAACGCAAGTGACATCCTTGCTGTGGAGCTTTTGCAAACAGATGCACGACTTGCTGTTAGTGGAGAGATAGGAAAGCCGTGTCCTGGTGGAACGCTGCGTGTGGTTCCTTTGTTTGAAACTGTAACGGACTTGAGAGGAGCTGGCTCAATGATCAGGAAATTATTATCCATTGATTGGTACAGGGAGCACATCATCAAGAACCATAATGGGTATCAAGAGGTATCTATAGAAGCACATTTTGTATTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

114

Amino Acids

12.5

Weight (kDa)

5.21

Isoelectric Point (pI)

23.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	5 - 106	1.8e-23	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	267
AciI	CCGC	1 cut(s)	34
AfaI	GTAC	2 cut(s)	21, 272
AfiI	CCNNNNNNNGG	3 cut(s)	115, 176, 267
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	3 cut(s)	49, 121, 233
AluI	AGCT	3 cut(s)	49, 121, 233
Alw21I	GWGCWC	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	41, 187
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	28, 174
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	177
BciVI	GTATCC	1 cut(s)	19
BclI	TGATCA	1 cut(s)	243
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	19
BisI	GCNGC	2 cut(s)	42, 188
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	2 cut(s)	43, 189
BmcAI	AGTACT	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	124
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 176, 267
Bse1I	ACTGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	3 cut(s)	115, 176, 267
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	28, 174
BsiHKAI	GWGCWC	1 cut(s)	282
BslI	CCNNNNNNNGG	3 cut(s)	115, 176, 267
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	243
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	31, 214
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	246
BstMBI	GATC	1 cut(s)	243
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 143
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	2 cut(s)	28, 174
BsuI	GTATCC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	20, 271
CviJI	RGCY	6 cut(s)	49, 89, 121, 169, 233, 237
CviKI_1	RGCY	6 cut(s)	49, 89, 121, 169, 233, 237
CviQI	GTAC	2 cut(s)	20, 271
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	175
FaiI	YATR	6 cut(s)	11, 73, 75, 86, 297, 320
FauNDI	CATATG	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	42, 188
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	2 cut(s)	42, 188
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	2 cut(s)	42, 188
Hpy188III	TCNNGA	3 cut(s)	247, 289, 308
HpyCH4III	ACNGT	2 cut(s)	31, 214
HpyCH4V	TGCA	2 cut(s)	127, 137
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 143
HpyF3I	CTNAG	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	1 cut(s)	243
LmnI	GCTCC	4 cut(s)	68, 118, 230, 277
LpnPI	CCDG	6 cut(s)	8, 162, 189, 219, 232, 259
Lsp1109I	GCAGC	2 cut(s)	28, 174
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	2 cut(s)	101, 214
MalI	GATC	1 cut(s)	245
MboI	GATC	1 cut(s)	243
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	1 cut(s)	251
MnlI	CCTC	2 cut(s)	221, 304
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	95, 143
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	1 cut(s)	243
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	267
PkrI	GCNGC	2 cut(s)	43, 189
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	198
RsaI	GTAC	2 cut(s)	21, 272
RsaNI	GTAC	2 cut(s)	20, 271
SatI	GCNGC	2 cut(s)	42, 188
Sau3AI	GATC	1 cut(s)	243
ScaI	AGTACT	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	177
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	4 cut(s)	51, 123, 235, 315
SfaNI	GCATC	1 cut(s)	124
SfcI	CTRYAG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	1 cut(s)	251
SsiI	CCGC	1 cut(s)	34
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	175
TaaI	ACNGT	2 cut(s)	31, 214
TasI	AATT	1 cut(s)	251
TatI	WGTACW	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	41, 187
Tsp45I	GTSAC	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	233
Van91I	CCANNNNNTGG	1 cut(s)	267
XspI	CTAG	1 cut(s)	50
ZrmI	AGTACT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.