Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Forward (+)

57940188 .. 57948663

Gene Structure 8476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00377400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGACGGACACGACGGACGATATCGCCGAGGAAATCTCGTTCCAGAGCTTCGAAGACGATTGTAAAATGCTCGGAAATCTTCTCCTGGAGGTTTTGCAGCGAGAAGTCGGAGCTCAGATGAGGGAGAAAGTCGACCGCTACAGAACCCTCGCTCAGGTTCGAGAGATAACTTCTATATGGCGGACGGATGAGCTTAGGCGCCATAAACCCACACCGATTGATGAAGCTAGCGCAGGTTTGAACATTGTGGAGCAGTCCCTTTGGAAAGCTGTACCTCATTATTTACGTCGTGTCGGCAATGCTTTAAAGAAGCACTTTGGAAAACCACTTCCACCGAAATGCACACCAATCGGGTTTGGGTCTTGGATGGGGGGTGATAGAGATGGAAATCCCAATGTGACAGCAAAGGTCACAAAAGATGTCTCACTTTTATCTAGGTGGATGACTATTGATCTCTATATTCGAGAAGTGGATAGCCTGAAATTTGAACTATCCATGAATAGGTGCAGCGATAGCTTGTCAAAACTGGCACATGAGATCCTAGAGCAAGAATGCAATGTTGGTCATTCTCACTATCCCGAATTGAAATTCCTCGAACTGGGCTACTCAATCAGCGGGATGGTCCGGAATCTCCAAGATCTCCAATGGCAAAGTCTCCATCCCAGAACTCTCTTCGTAATGCTAGTCTCATTGCCAAAAGGAAAATGTTTGCTTGAGTCCCGAGGGTTGGAAGGTCCGGTTTCCGAGAAGCTTTTGGAGCCAAAGCCCACTAAGAGATCTGCAATTGCTCCTTATAGAATTGTTCTTGGTAATATAAAAGACAAGTTGCTTGCTCTTGAAACACATTTAGCGAAGATTGCATTGGGGCGGGAATGCGGTAGACATGCTGAAACACTTGATGCAATTACCAAATATTTGGATATGGGCACATACGGTGAGTGGGATGAAGAAAAGAAACTGGAATTTCTAACAAGAGAGCTCAAAGGAAAAAGACCGCTAGTCTCACCTAGCATGGAGGTTGCTTCTGATGTTAAAGAAGTACTGGATACCTTCCGCATTGCTGCTGAACTAGGGAGTGATTCGCTTGGAGCATATGTGATTTCTATGGCTTCTAACGCAAGTGATGTCCTTGCTGTGGAGCTTTTGCAAAAAGATGCACGACTTGCCGTTAGTGGAGAAATAGGAAAGCCATGTCCTGGTGGAACGCTGCGTGTGGTTCCTTTGTTTGAAACTGTGAAGGACTTGAGAGGAGCTGGCTCAGTGATCAGGAAATTATTGTCCATTGATTGGTACAGGGAGCACATCATCAAGAACCATAATGGGCATCAAGAGGTGATGGTTGGATACTCTGATTCTGGAAAAGATGCAGGGCGTTTTACTGCTGCGTGGGAACTTTACAAAGCTCAAGAGGATGTTGTAGCTGCATGCAATGAGTATGATATCAAAGTTACCCTGTTTCATGGGAGAGGAGGAAGTATTGGTCGTGGAGGGGCCCCACATATCTTGCCATTCAATCCCAGCCGCCTGGCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

511

Amino Acids

57.09

Weight (kDa)

6.72

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	54 - 181	1.6e-42	Phosphoenolpyruvate carboxylase
PEPcase	PF00311	281 - 499	8.5e-80	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	198
AccB7I	CCANNNNNTGG	2 cut(s)	1196, 1287
AccI	GTMKAC	2 cut(s)	132, 880
AccIII	TCCGGA	1 cut(s)	624
AciI	CCGC	8 cut(s)	136, 181, 615, 868, 876, 995, 1054, 1522
AclWI	GGATC	1 cut(s)	532
AcsI	RAATTY	3 cut(s)	482, 587, 962
AcyI	GRCGYC	1 cut(s)	199
AfaI	GTAC	3 cut(s)	273, 1041, 1292
AfiI	CCNNNNNNNGG	7 cut(s)	154, 501, 598, 727, 1135, 1196, 1287
AgsI	TTSAA	6 cut(s)	241, 488, 586, 839, 1229, 1513
AhdI	GACNNNNNGTC	1 cut(s)	998
AjnI	CCWGG	3 cut(s)	84, 1195, 1524
AjuI	GAANNNNNNNTTGG	4 cut(s)	543, 575, 845, 877
AloI	GAACNNNNNNTCC	2 cut(s)	23, 55
Alw21I	GWGCWC	3 cut(s)	115, 981, 1302
Alw26I	GTCTC	4 cut(s)	427, 659, 691, 1006
AlwI	GGATC	1 cut(s)	532
Ama87I	CYCGRG	1 cut(s)	720
Aor13HI	TCCGGA	1 cut(s)	624
AoxI	GGCC	1 cut(s)	1491
ApaI	GGGCCC	1 cut(s)	1495
ApeKI	GCWGC	6 cut(s)	97, 507, 1061, 1207, 1382, 1421
ApoI	RAATTY	3 cut(s)	482, 587, 962
AspLEI	GCGC	2 cut(s)	201, 233
AspS9I	GGNCC	4 cut(s)	622, 734, 1491, 1492
AsuHPI	GGTGA	4 cut(s)	386, 947, 996, 1345
AsuII	TTCGAA	1 cut(s)	51
AsuNHI	GCTAGC	1 cut(s)	227
AvaI	CYCGRG	1 cut(s)	720
AvaII	GGWCC	2 cut(s)	622, 734
BaeGI	GKGCMC	2 cut(s)	929, 1495
BanI	GGYRCC	1 cut(s)	198
BanII	GRGCYC	3 cut(s)	115, 981, 1495
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	3 cut(s)	115, 981, 1302
BbvI	GCAGC	6 cut(s)	109, 519, 1048, 1194, 1369, 1408
BccI	CCATC	5 cut(s)	361, 377, 613, 666, 1330
BceAI	ACGGC	1 cut(s)	1151
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BciT130I	CCWGG	3 cut(s)	86, 1197, 1526
BciVI	GTATCC	2 cut(s)	1039, 1337
BclI	TGATCA	1 cut(s)	1263
BcoDI	GTCTC	4 cut(s)	427, 659, 691, 1006
BfaI	CTAG	7 cut(s)	228, 435, 542, 683, 998, 1008, 1070
BfmI	CTRYAG	1 cut(s)	139
BfoI	RGCGCY	1 cut(s)	202
BfuAI	ACCTGC	1 cut(s)	224
BfuI	GTATCC	2 cut(s)	1039, 1337
BglII	AGATCT	2 cut(s)	637, 776
BisI	GCNGC	7 cut(s)	98, 508, 1062, 1208, 1383, 1422, 1522
BlsI	GCNGC	7 cut(s)	99, 509, 1063, 1209, 1384, 1423, 1523
BmcAI	AGTACT	1 cut(s)	1041
Bme1390I	CCNGG	3 cut(s)	86, 1197, 1526
Bme18I	GGWCC	2 cut(s)	622, 734
BmeRI	GACNNNNNGTC	1 cut(s)	998
BmeT110I	CYCGRG	1 cut(s)	720
BmgT120I	GGNCC	4 cut(s)	622, 734, 1491, 1492
BmiI	GGNNCC	6 cut(s)	200, 759, 1218, 1492, 1493, 1494
BmrFI	CCNGG	3 cut(s)	86, 1197, 1526
BmrI	ACTGGG	1 cut(s)	608
BmsI	GCATC	4 cut(s)	889, 1144, 1333, 1354
BmtI	GCTAGC	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	608
BpiI	GAAGAC	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	107
Bpu10I	CCTNAGC	2 cut(s)	153, 194
Bpu14I	TTCGAA	1 cut(s)	51
BpuEI	CTTGAG	3 cut(s)	734, 1264, 1389
BsaBI	GATNNNNATC	1 cut(s)	387
BsaHI	GRCGYC	1 cut(s)	199
BsaJI	CCNNGG	2 cut(s)	27, 721
BsaWI	WCCGGW	2 cut(s)	624, 736
BsaXI	ACNNNNNCTCC	2 cut(s)	1080, 1110
Bsc4I	CCNNNNNNNGG	7 cut(s)	154, 501, 598, 727, 1135, 1196, 1287
Bse1I	ACTGG	4 cut(s)	531, 603, 963, 1047
Bse3DI	GCAATG	5 cut(s)	304, 562, 689, 1056, 1435
Bse8I	GATNNNNATC	1 cut(s)	387
BseAI	TCCGGA	1 cut(s)	624
BseBI	CCWGG	3 cut(s)	86, 1197, 1526
BseDI	CCNNGG	2 cut(s)	27, 721
BseGI	GGATG	7 cut(s)	193, 372, 447, 624, 658, 949, 1417
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	7 cut(s)	154, 501, 598, 727, 1135, 1196, 1287
BseMI	GCAATG	5 cut(s)	304, 562, 689, 1056, 1435
BseMII	CTCAG	3 cut(s)	128, 167, 1272
BseNI	ACTGG	4 cut(s)	531, 603, 963, 1047
BseRI	GAGGAG	2 cut(s)	1263, 1482
BseSI	GKGCMC	2 cut(s)	929, 1495
BseXI	GCAGC	6 cut(s)	109, 519, 1048, 1194, 1369, 1408
BseYI	CCCAGC	1 cut(s)	1517
BsgI	GTGCAG	1 cut(s)	526
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	1493
BshNI	GGYRCC	1 cut(s)	198
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	3 cut(s)	115, 981, 1302
BsiHKCI	CYCGRG	1 cut(s)	720
BsiSI	CCGG	2 cut(s)	625, 737
BslFI	GGGAC	2 cut(s)	241, 703
BslI	CCNNNNNNNGG	7 cut(s)	154, 501, 598, 727, 1135, 1196, 1287
BsmAI	GTCTC	4 cut(s)	427, 659, 691, 1006
BsmFI	GGGAC	2 cut(s)	241, 703
BsmI	GAATGC	2 cut(s)	557, 878
BsnI	GGCC	1 cut(s)	1493
BsoBI	CYCGRG	1 cut(s)	720
Bsp119I	TTCGAA	1 cut(s)	51
Bsp120I	GGGCCC	1 cut(s)	1491
Bsp1286I	GDGCHC	5 cut(s)	115, 929, 981, 1302, 1495
Bsp13I	TCCGGA	1 cut(s)	624
Bsp143I	GATC	5 cut(s)	451, 537, 637, 776, 1263
BspACI	CCGC	8 cut(s)	136, 181, 615, 868, 876, 995, 1054, 1522
BspANI	GGCC	1 cut(s)	1493
BspCNI	CTCAG	3 cut(s)	127, 166, 1271
BspEI	TCCGGA	1 cut(s)	624
BspLI	GGNNCC	6 cut(s)	200, 759, 1218, 1492, 1493, 1494
BspMI	ACCTGC	1 cut(s)	224
BspOI	GCTAGC	1 cut(s)	231
BspPI	GGATC	1 cut(s)	532
BspT104I	TTCGAA	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	198
BsrDI	GCAATG	5 cut(s)	304, 562, 689, 1056, 1435
BsrI	ACTGG	4 cut(s)	531, 603, 963, 1047
BssECI	CCNNGG	2 cut(s)	27, 721
BssMI	GATC	5 cut(s)	451, 537, 637, 776, 1263
BssNI	GRCGYC	1 cut(s)	199
Bst2UI	CCWGG	3 cut(s)	86, 1197, 1526
Bst4CI	ACNGT	2 cut(s)	935, 1234
Bst6I	CTCTTC	1 cut(s)	677
BstACI	GRCGYC	1 cut(s)	199
BstAPI	GCANNNNNTGC	1 cut(s)	1163
BstBI	TTCGAA	1 cut(s)	51
BstC8I	GCNNGC	4 cut(s)	229, 831, 1255, 1426
BstDEI	CTNAG	5 cut(s)	114, 153, 194, 771, 1258
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	7 cut(s)	193, 372, 447, 624, 658, 949, 1417
BstH2I	RGCGCY	1 cut(s)	202
BstHHI	GCGC	2 cut(s)	201, 233
BstKTI	GATC	5 cut(s)	454, 540, 640, 779, 1266
BstMAI	GTCTC	4 cut(s)	427, 659, 691, 1006
BstMBI	GATC	5 cut(s)	451, 537, 637, 776, 1263
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	5 cut(s)	513, 757, 857, 1115, 1163
BstNI	CCWGG	3 cut(s)	86, 1197, 1526
BstNSI	RCATGY	2 cut(s)	887, 1428
BstSCI	CCNGG	3 cut(s)	84, 1195, 1524
BstSFI	CTRYAG	1 cut(s)	139
BstSLI	GKGCMC	2 cut(s)	929, 1495
BstV1I	GCAGC	6 cut(s)	109, 519, 1048, 1194, 1369, 1408
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	3 cut(s)	537, 637, 776
BstXI	CCANNNNNNTGG	2 cut(s)	916, 1525
BstYI	RGATCY	3 cut(s)	537, 637, 776
BsuI	GTATCC	2 cut(s)	1039, 1337
BsuRI	GGCC	1 cut(s)	1493
BtsCI	GGATG	7 cut(s)	193, 372, 447, 624, 658, 949, 1417
BtsIMutI	CAGTG	1 cut(s)	1266
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	4 cut(s)	229, 831, 1255, 1426
CfoI	GCGC	2 cut(s)	201, 233
Cfr13I	GGNCC	4 cut(s)	622, 734, 1491, 1492
Csp6I	GTAC	3 cut(s)	272, 1040, 1291
CspCI	CAANNNNNGTGG	4 cut(s)	199, 234, 1485, 1520
CviAII	CATG	7 cut(s)	496, 533, 884, 1012, 1191, 1425, 1460
CviQI	GTAC	3 cut(s)	272, 1040, 1291
DdeI	CTNAG	5 cut(s)	114, 153, 194, 771, 1258
DinI	GGCGCC	1 cut(s)	200
DpnI	GATC	5 cut(s)	453, 539, 639, 778, 1265
DpnII	GATC	5 cut(s)	451, 537, 637, 776, 1263
DraI	TTTAAA	1 cut(s)	306
DriI	GACNNNNNGTC	1 cut(s)	998
Eam1104I	CTCTTC	1 cut(s)	677
Eam1105I	GACNNNNNGTC	1 cut(s)	998
EarI	CTCTTC	1 cut(s)	677
EciI	GGCGGA	1 cut(s)	196
Ecl136II	GAGCTC	2 cut(s)	113, 979
Eco24I	GRGCYC	3 cut(s)	115, 981, 1495
Eco32I	GATATC	2 cut(s)	22, 1441
Eco47I	GGWCC	2 cut(s)	622, 734
Eco53kI	GAGCTC	2 cut(s)	113, 979
Eco88I	CYCGRG	1 cut(s)	720
EcoICRI	GAGCTC	2 cut(s)	113, 979
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoO109I	RGGNCCY	2 cut(s)	1491, 1492
EcoRII	CCWGG	3 cut(s)	84, 1195, 1524
EcoRV	GATATC	2 cut(s)	22, 1441
EcoT38I	GRGCYC	3 cut(s)	115, 981, 1495
EgeI	GGCGCC	1 cut(s)	200
EheI	GGCGCC	1 cut(s)	200
FaeI	CATG	7 cut(s)	499, 536, 887, 1015, 1194, 1428, 1463
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FaqI	GGGAC	2 cut(s)	241, 703
FatI	CATG	7 cut(s)	495, 532, 883, 1011, 1190, 1424, 1459
FauI	CCCGC	2 cut(s)	608, 861
FauNDI	CATATG	1 cut(s)	1093
FbaI	TGATCA	1 cut(s)	1263
FblI	GTMKAC	2 cut(s)	132, 880
Fnu4HI	GCNGC	7 cut(s)	98, 508, 1062, 1208, 1383, 1422, 1522
FokI	GGATG	7 cut(s)	200, 379, 454, 631, 645, 956, 1424
FriOI	GRGCYC	3 cut(s)	115, 981, 1495
Fsp4HI	GCNGC	7 cut(s)	98, 508, 1062, 1208, 1383, 1422, 1522
FspBI	CTAG	7 cut(s)	228, 435, 542, 683, 998, 1008, 1070
GlaI	GCGC	2 cut(s)	200, 232
GluI	GCNGC	7 cut(s)	98, 508, 1062, 1208, 1383, 1422, 1522
GsaI	CCCAGC	1 cut(s)	1521
GsuI	CTGGAG	1 cut(s)	107
HaeII	RGCGCY	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	1493
HapII	CCGG	2 cut(s)	625, 737
HhaI	GCGC	2 cut(s)	201, 233
Hin1I	GRCGYC	1 cut(s)	199
Hin1II	CATG	7 cut(s)	499, 536, 887, 1015, 1194, 1428, 1463
Hin6I	GCGC	2 cut(s)	199, 231
HinP1I	GCGC	2 cut(s)	199, 231
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	749
HinfI	GANTC	4 cut(s)	628, 716, 1079, 1352
HpaII	CCGG	2 cut(s)	625, 737
HphI	GGTGA	4 cut(s)	386, 947, 996, 1345
Hpy166II	GTNNAC	2 cut(s)	133, 881
Hpy188I	TCNGA	6 cut(s)	74, 110, 117, 745, 1027, 1351
Hpy8I	GTNNAC	2 cut(s)	133, 881
Hpy99I	CGWCG	2 cut(s)	16, 291
HpyAV	CCTTC	3 cut(s)	725, 1060, 1231
HpyCH4III	ACNGT	2 cut(s)	935, 1234
HpyCH4IV	ACGT	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	5 cut(s)	513, 757, 857, 1115, 1163
HpyF3I	CTNAG	5 cut(s)	114, 153, 194, 771, 1258
HpySE526I	ACGT	1 cut(s)	286
Hsp92I	GRCGYC	1 cut(s)	199
Hsp92II	CATG	7 cut(s)	499, 536, 887, 1015, 1194, 1428, 1463
HspAI	GCGC	2 cut(s)	199, 231
KasI	GGCGCC	1 cut(s)	198
Kpn2I	TCCGGA	1 cut(s)	624
Ksp22I	TGATCA	1 cut(s)	1263
Kzo9I	GATC	5 cut(s)	451, 537, 637, 776, 1263
LmnI	GCTCC	8 cut(s)	110, 250, 757, 793, 1088, 1138, 1250, 1297
Lsp1109I	GCAGC	6 cut(s)	109, 519, 1048, 1194, 1369, 1408
LweI	GCATC	4 cut(s)	889, 1144, 1333, 1354
MaeI	CTAG	7 cut(s)	228, 435, 542, 683, 998, 1008, 1070
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	3 cut(s)	397, 409, 1447
MalI	GATC	5 cut(s)	453, 539, 639, 778, 1265
MboI	GATC	5 cut(s)	451, 537, 637, 776, 1263
MboII	GAAGA	5 cut(s)	65, 71, 664, 865, 959
MfeI	CAATTG	1 cut(s)	783
MflI	RGATCY	3 cut(s)	537, 637, 776
MhlI	GDGCHC	5 cut(s)	115, 929, 981, 1302, 1495
MluCI	AATT	8 cut(s)	482, 581, 587, 783, 798, 903, 962, 1271
Mly113I	GGCGCC	1 cut(s)	199
MlyI	GAGTC	1 cut(s)	725
MmeI	TCCRAC	3 cut(s)	88, 708, 1321
MroI	TCCGGA	1 cut(s)	624
MseI	TTAA	2 cut(s)	305, 1032
MslI	CAYNNNNRTG	1 cut(s)	337
MspA1I	CMGCKG	1 cut(s)	615
MspI	CCGG	2 cut(s)	625, 737
MspR9I	CCNGG	3 cut(s)	86, 1197, 1526
MunI	CAATTG	1 cut(s)	783
Mva1269I	GAATGC	2 cut(s)	557, 878
MvaI	CCWGG	3 cut(s)	86, 1197, 1526
MwoI	GCNNNNNNNGC	5 cut(s)	513, 757, 857, 1115, 1163
NarI	GGCGCC	1 cut(s)	199
NdeI	CATATG	1 cut(s)	1093
NdeII	GATC	5 cut(s)	451, 537, 637, 776, 1263
NheI	GCTAGC	1 cut(s)	227
NlaIII	CATG	7 cut(s)	499, 536, 887, 1015, 1194, 1428, 1463
NlaIV	GGNNCC	6 cut(s)	200, 759, 1218, 1492, 1493, 1494
NmeAIII	GCCGAG	1 cut(s)	52
NmuCI	GTSAC	2 cut(s)	397, 409
NspI	RCATGY	2 cut(s)	887, 1428
NspV	TTCGAA	1 cut(s)	51
PaeI	GCATGC	1 cut(s)	1428
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	2 cut(s)	557, 878
PfeI	GAWTC	3 cut(s)	628, 1079, 1352
PflMI	CCANNNNNTGG	2 cut(s)	1196, 1287
PfoI	TCCNGGA	1 cut(s)	84
PkrI	GCNGC	7 cut(s)	99, 509, 1063, 1209, 1384, 1423, 1523
PleI	GAGTC	1 cut(s)	724
PluTI	GGCGCC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	724
Psp124BI	GAGCTC	2 cut(s)	115, 981
Psp6I	CCWGG	3 cut(s)	84, 1195, 1524
PspFI	CCCAGC	1 cut(s)	1517
PspGI	CCWGG	3 cut(s)	84, 1195, 1524
PspN4I	GGNNCC	6 cut(s)	200, 759, 1218, 1492, 1493, 1494
PspOMI	GGGCCC	1 cut(s)	1491
PspPI	GGNCC	4 cut(s)	622, 734, 1491, 1492
PsuI	RGATCY	3 cut(s)	537, 637, 776
RsaI	GTAC	3 cut(s)	273, 1041, 1292
RsaNI	GTAC	3 cut(s)	272, 1040, 1291
RseI	CAYNNNNRTG	1 cut(s)	337
SacI	GAGCTC	2 cut(s)	115, 981
SalI	GTCGAC	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	305, 1032
SatI	GCNGC	7 cut(s)	98, 508, 1062, 1208, 1383, 1422, 1522
Sau3AI	GATC	5 cut(s)	451, 537, 637, 776, 1263
Sau96I	GGNCC	4 cut(s)	622, 734, 1491, 1492
ScaI	AGTACT	1 cut(s)	1041
SchI	GAGTC	1 cut(s)	725
ScrFI	CCNGG	3 cut(s)	86, 1197, 1526
SduI	GDGCHC	5 cut(s)	115, 929, 981, 1302, 1495
SfaNI	GCATC	4 cut(s)	889, 1144, 1333, 1354
SfcI	CTRYAG	1 cut(s)	139
SfoI	GGCGCC	1 cut(s)	200
SfuI	TTCGAA	1 cut(s)	51
SinI	GGWCC	2 cut(s)	622, 734
SmiMI	CAYNNNNRTG	1 cut(s)	337
SmlI	CTYRAG	3 cut(s)	713, 1243, 1404
SmoI	CTYRAG	3 cut(s)	713, 1243, 1404
SphI	GCATGC	1 cut(s)	1428
Sse9I	AATT	8 cut(s)	482, 581, 587, 783, 798, 903, 962, 1271
SsiI	CCGC	8 cut(s)	136, 181, 615, 868, 876, 995, 1054, 1522
SspDI	GGCGCC	1 cut(s)	198
SspI	AATATT	1 cut(s)	914
SspMI	CTAG	7 cut(s)	228, 435, 542, 683, 998, 1008, 1070
SstI	GAGCTC	2 cut(s)	115, 981
StyD4I	CCNGG	3 cut(s)	84, 1195, 1524
TaaI	ACNGT	2 cut(s)	935, 1234
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	5 cut(s)	51, 132, 160, 463, 594
TasI	AATT	8 cut(s)	482, 581, 587, 783, 798, 903, 962, 1271
TatI	WGTACW	1 cut(s)	1039
TauI	GCSGC	1 cut(s)	1524
TfiI	GAWTC	3 cut(s)	628, 1079, 1352
Tru1I	TTAA	2 cut(s)	305, 1032
Tru9I	TTAA	2 cut(s)	305, 1032
TscAI	CASTG	1 cut(s)	1266
TseFI	GTSAC	2 cut(s)	397, 409
TseI	GCWGC	6 cut(s)	97, 507, 1061, 1207, 1382, 1421
Tsp45I	GTSAC	2 cut(s)	397, 409
TspDTI	ATGAA	4 cut(s)	237, 512, 960, 1448
TspGWI	ACGGA	3 cut(s)	20, 29, 200
TspRI	CASTG	1 cut(s)	1266
Van91I	CCANNNNNTGG	2 cut(s)	1196, 1287
VpaK11BI	GGWCC	2 cut(s)	622, 734
XagI	CCTNNNNNAGG	1 cut(s)	152
XapI	RAATTY	3 cut(s)	482, 587, 962
XceI	RCATGY	2 cut(s)	887, 1428
XmiI	GTMKAC	2 cut(s)	132, 880
XspI	CTAG	7 cut(s)	228, 435, 542, 683, 998, 1008, 1070
ZrmI	AGTACT	1 cut(s)	1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.