Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Forward (+)

29868431 .. 29871709

Gene Structure 3279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31470

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAGTCATGCGTCTCCTCATCAACTTCTGATGTTAAAGAAGTACTGGATACCTTCCGCATTGCTGCTGAGCTAGGGAGTGATTCGCTTGGAGCATATGTGATTTCTATGGCTTCTAACGCAAGTGACATCCTTGCTGTGGAGCTTTTGCAAAAAGATGCACGACTTGCCGTTAGTGGAGAGATAGGAAAGCCGTGTCCTGGTGGAACGGAAGTGATGATTTGGTACTCTGATTCTGGAAAAGATGTAGGGCGTTTTACTGCTGCCTGGGAACTTTACAAAGCTCAAGAGGATGTTATAGCTGCATGCAATGAGTATGATATCAAAGTTACCCTGTTTCATGGGAGAGGAGGAAGTATTGGTCGTGGAGGGGGCCCTACATATCTTGCCATTCAGTCCCAGCCGCCTGGCTCTGTGATGCTAGAGATATACACAACAGCTGTGCTGCTTGCAACGTTGCGTCCACCACACCCTTCTCGAGAACAAAAGTGGGGTAACCTCATGGAGGAGATCTCAAAGATCAGTTGTCAGAATTACAGGAGTGGTCTACGAAAATCCAGAATTCCTTACTTCCAGGAGGCTACACCCCGGGCTGAGCTTGTCTTCCTCAACATAGGAAGCTGGCCCTCAAGAGGAAAGAGCTCTACTGGAATTGGACATTTTCGGGCAATTCCATGGGTGTTTGCATGGACTCAAACCAGATTTGTTCTTCCAGCTTGGCTTGGAGTTGAACCAGGTTTGAGGGGTTTGTGGGAAGGGACACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

255

Amino Acids

27.87

Weight (kDa)

6.44

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	9 - 57	4.7e-09	Phosphoenolpyruvate carboxylase
PEPcase	PF00311	71 - 139	1e-32	Phosphoenolpyruvate carboxylase
PEPcase	PF00311	141 - 249	9.5e-37	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	547
AciI	CCGC	2 cut(s)	58, 404
AclI	AACGTT	1 cut(s)	455
AcsI	RAATTY	1 cut(s)	561
AfaI	GTAC	2 cut(s)	45, 227
AfiI	CCNNNNNNNGG	4 cut(s)	139, 200, 505, 632
AgsI	TTSAA	1 cut(s)	731
AjnI	CCWGG	5 cut(s)	199, 266, 406, 573, 733
AluBI	AGCT	9 cut(s)	73, 145, 284, 302, 440, 598, 621, 642, 716
AluI	AGCT	9 cut(s)	73, 145, 284, 302, 440, 598, 621, 642, 716
Alw21I	GWGCWC	1 cut(s)	644
Alw26I	GTCTC	1 cut(s)	19
Ama87I	CYCGRG	2 cut(s)	477, 588
AoxI	GGCC	2 cut(s)	373, 623
ApaI	GGGCCC	1 cut(s)	377
ApeKI	GCWGC	4 cut(s)	65, 263, 302, 445
ApoI	RAATTY	1 cut(s)	561
AspS9I	GGNCC	3 cut(s)	373, 374, 624
AsuC2I	CCSGG	2 cut(s)	589, 590
AvaI	CYCGRG	2 cut(s)	477, 588
BaeGI	GKGCMC	1 cut(s)	377
BanII	GRGCYC	2 cut(s)	377, 644
BbsI	GAAGAC	1 cut(s)	595
Bbv12I	GWGCWC	1 cut(s)	644
BbvI	GCAGC	4 cut(s)	52, 250, 289, 432
BceAI	ACGGC	2 cut(s)	155, 178
BciT130I	CCWGG	5 cut(s)	201, 268, 408, 575, 735
BciVI	GTATCC	1 cut(s)	43
BcnI	CCSGG	2 cut(s)	589, 590
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	2 cut(s)	74, 422
BfuI	GTATCC	1 cut(s)	43
BglII	AGATCT	1 cut(s)	510
BisI	GCNGC	5 cut(s)	66, 264, 303, 404, 446
BlpI	GCTNAGC	2 cut(s)	69, 594
BlsI	GCNGC	5 cut(s)	67, 265, 304, 405, 447
BmcAI	AGTACT	1 cut(s)	45
Bme1390I	CCNGG	7 cut(s)	201, 268, 408, 575, 589, 590, 735
BmeT110I	CYCGRG	2 cut(s)	477, 588
BmgT120I	GGNCC	3 cut(s)	373, 374, 624
BmiI	GGNNCC	2 cut(s)	374, 375
BmrFI	CCNGG	7 cut(s)	201, 268, 408, 575, 589, 590, 735
BmsI	GCATC	2 cut(s)	148, 408
BpiI	GAAGAC	1 cut(s)	595
BplI	GAGNNNNNCTC	2 cut(s)	497, 529
Bpu1102I	GCTNAGC	2 cut(s)	69, 594
BpuEI	CTTGAG	2 cut(s)	270, 613
BpuMI	CCSGG	2 cut(s)	589, 590
BsaJI	CCNNGG	4 cut(s)	267, 587, 588, 674
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 200, 505, 632
Bse1I	ACTGG	2 cut(s)	51, 652
Bse3DI	GCAATG	2 cut(s)	60, 316
BseBI	CCWGG	5 cut(s)	201, 268, 408, 575, 735
BseDI	CCNNGG	4 cut(s)	267, 587, 588, 674
BseGI	GGATG	2 cut(s)	129, 298
BseLI	CCNNNNNNNGG	4 cut(s)	139, 200, 505, 632
BseMI	GCAATG	2 cut(s)	60, 316
BseMII	CTCAG	2 cut(s)	60, 585
BseNI	ACTGG	2 cut(s)	51, 652
BseRI	GAGGAG	3 cut(s)	7, 363, 521
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	4 cut(s)	52, 250, 289, 432
BseYI	CCCAGC	1 cut(s)	399
BshFI	GGCC	2 cut(s)	375, 625
BsiHKAI	GWGCWC	1 cut(s)	644
BsiHKCI	CYCGRG	2 cut(s)	477, 588
BsiSI	CCGG	1 cut(s)	589
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	4 cut(s)	139, 200, 505, 632
BsmAI	GTCTC	1 cut(s)	19
BsmBI	CGTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	375, 625
BsoBI	CYCGRG	2 cut(s)	477, 588
Bsp120I	GGGCCC	1 cut(s)	373
Bsp1286I	GDGCHC	2 cut(s)	377, 644
Bsp143I	GATC	2 cut(s)	510, 519
Bsp1720I	GCTNAGC	2 cut(s)	69, 594
Bsp19I	CCATGG	1 cut(s)	674
BspACI	CCGC	2 cut(s)	58, 404
BspANI	GGCC	2 cut(s)	375, 625
BspCNI	CTCAG	2 cut(s)	61, 586
BspLI	GGNNCC	2 cut(s)	374, 375
BsrDI	GCAATG	2 cut(s)	60, 316
BsrI	ACTGG	2 cut(s)	51, 652
BssECI	CCNNGG	4 cut(s)	267, 587, 588, 674
BssMI	GATC	2 cut(s)	510, 519
BssT1I	CCWWGG	1 cut(s)	674
Bst2UI	CCWGG	5 cut(s)	201, 268, 408, 575, 735
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstC8I	GCNNGC	3 cut(s)	307, 450, 623
BstDEI	CTNAG	2 cut(s)	69, 594
BstDSI	CCRYGG	1 cut(s)	674
BstEII	GGTNACC	1 cut(s)	494
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	129, 298
BstKTI	GATC	2 cut(s)	513, 522
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	2 cut(s)	510, 519
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 167
BstNI	CCWGG	5 cut(s)	201, 268, 408, 575, 735
BstNSI	RCATGY	1 cut(s)	309
BstPI	GGTNACC	1 cut(s)	494
BstSCI	CCNGG	7 cut(s)	199, 266, 406, 573, 587, 588, 733
BstSLI	GKGCMC	1 cut(s)	377
BstV1I	GCAGC	4 cut(s)	52, 250, 289, 432
BstV2I	GAAGAC	1 cut(s)	595
BstX2I	RGATCY	1 cut(s)	510
BstXI	CCANNNNNNTGG	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	510
BsuI	GTATCC	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	375, 625
BtgI	CCRYGG	1 cut(s)	674
BtsCI	GGATG	2 cut(s)	129, 298
BtsIMutI	CAGTG	1 cut(s)	763
Cac8I	GCNNGC	3 cut(s)	307, 450, 623
Cfr13I	GGNCC	3 cut(s)	373, 374, 624
Cfr9I	CCCGGG	1 cut(s)	588
CseI	GACGC	1 cut(s)	449
CsiI	ACCWGGT	1 cut(s)	733
Csp6I	GTAC	2 cut(s)	44, 226
CviAII	CATG	6 cut(s)	9, 306, 341, 502, 675, 687
CviQI	GTAC	2 cut(s)	44, 226
DdeI	CTNAG	2 cut(s)	69, 594
DpnI	GATC	2 cut(s)	512, 521
DpnII	GATC	2 cut(s)	510, 519
Ecl136II	GAGCTC	1 cut(s)	642
Eco130I	CCWWGG	1 cut(s)	674
Eco24I	GRGCYC	2 cut(s)	377, 644
Eco32I	GATATC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	642
Eco88I	CYCGRG	2 cut(s)	477, 588
Eco91I	GGTNACC	1 cut(s)	494
EcoICRI	GAGCTC	1 cut(s)	642
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EcoO109I	RGGNCCY	2 cut(s)	373, 374
EcoO65I	GGTNACC	1 cut(s)	494
EcoRI	GAATTC	1 cut(s)	561
EcoRII	CCWGG	5 cut(s)	199, 266, 406, 573, 733
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	674
EcoT38I	GRGCYC	2 cut(s)	377, 644
ErhI	CCWWGG	1 cut(s)	674
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	6 cut(s)	12, 309, 344, 505, 678, 690
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	6 cut(s)	8, 305, 340, 501, 674, 686
FauNDI	CATATG	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	5 cut(s)	66, 264, 303, 404, 446
FokI	GGATG	2 cut(s)	116, 305
FriOI	GRGCYC	2 cut(s)	377, 644
Fsp4HI	GCNGC	5 cut(s)	66, 264, 303, 404, 446
FspBI	CTAG	2 cut(s)	74, 422
GluI	GCNGC	5 cut(s)	66, 264, 303, 404, 446
GsaI	CCCAGC	1 cut(s)	403
HaeIII	GGCC	2 cut(s)	375, 625
HapII	CCGG	1 cut(s)	589
HgaI	GACGC	1 cut(s)	449
Hin1II	CATG	6 cut(s)	12, 309, 344, 505, 678, 690
HinfI	GANTC	4 cut(s)	5, 83, 233, 691
HpaII	CCGG	1 cut(s)	589
Hpy166II	GTNNAC	2 cut(s)	464, 548
Hpy188I	TCNGA	3 cut(s)	31, 232, 531
Hpy188III	TCNNGA	6 cut(s)	237, 287, 477, 479, 558, 630
Hpy8I	GTNNAC	2 cut(s)	464, 548
HpyAV	CCTTC	3 cut(s)	64, 483, 749
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	6 cut(s)	151, 161, 305, 309, 452, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 167
HpyF3I	CTNAG	2 cut(s)	69, 594
HpySE526I	ACGT	1 cut(s)	455
Hsp92II	CATG	6 cut(s)	12, 309, 344, 505, 678, 690
Kzo9I	GATC	2 cut(s)	510, 519
LmnI	GCTCC	2 cut(s)	92, 142
Lsp1109I	GCAGC	4 cut(s)	52, 250, 289, 432
LweI	GCATC	2 cut(s)	148, 408
MabI	ACCWGGT	1 cut(s)	733
MaeI	CTAG	2 cut(s)	74, 422
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	3 cut(s)	125, 328, 494
MalI	GATC	2 cut(s)	512, 521
MboI	GATC	2 cut(s)	510, 519
MboII	GAAGA	2 cut(s)	595, 701
MflI	RGATCY	1 cut(s)	510
MhlI	GDGCHC	2 cut(s)	377, 644
MluCI	AATT	4 cut(s)	532, 561, 651, 669
MlyI	GAGTC	2 cut(s)	14, 685
MseI	TTAA	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	1 cut(s)	589
MspR9I	CCNGG	7 cut(s)	201, 268, 408, 575, 589, 590, 735
MvaI	CCWGG	5 cut(s)	201, 268, 408, 575, 735
MwoI	GCNNNNNNNGC	2 cut(s)	119, 167
NciI	CCSGG	2 cut(s)	589, 590
NcoI	CCATGG	1 cut(s)	674
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	2 cut(s)	510, 519
NlaIII	CATG	6 cut(s)	12, 309, 344, 505, 678, 690
NlaIV	GGNNCC	2 cut(s)	374, 375
NmuCI	GTSAC	1 cut(s)	125
NspI	RCATGY	1 cut(s)	309
PaeI	GCATGC	1 cut(s)	309
PaeR7I	CTCGAG	1 cut(s)	477
PfeI	GAWTC	2 cut(s)	83, 233
PfoI	TCCNGGA	1 cut(s)	573
PkrI	GCNGC	5 cut(s)	67, 265, 304, 405, 447
PleI	GAGTC	2 cut(s)	13, 685
PpsI	GAGTC	2 cut(s)	13, 685
Psp124BI	GAGCTC	1 cut(s)	644
Psp1406I	AACGTT	1 cut(s)	455
Psp6I	CCWGG	5 cut(s)	199, 266, 406, 573, 733
PspEI	GGTNACC	1 cut(s)	494
PspFI	CCCAGC	1 cut(s)	399
PspGI	CCWGG	5 cut(s)	199, 266, 406, 573, 733
PspN4I	GGNNCC	2 cut(s)	374, 375
PspOMI	GGGCCC	1 cut(s)	373
PspPI	GGNCC	3 cut(s)	373, 374, 624
PsuI	RGATCY	1 cut(s)	510
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	2 cut(s)	45, 227
RsaNI	GTAC	2 cut(s)	44, 226
SacI	GAGCTC	1 cut(s)	644
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	5 cut(s)	66, 264, 303, 404, 446
Sau3AI	GATC	2 cut(s)	510, 519
Sau96I	GGNCC	3 cut(s)	373, 374, 624
ScaI	AGTACT	1 cut(s)	45
SchI	GAGTC	2 cut(s)	14, 685
ScrFI	CCNGG	7 cut(s)	201, 268, 408, 575, 589, 590, 735
SduI	GDGCHC	2 cut(s)	377, 644
SexAI	ACCWGGT	1 cut(s)	733
SfaNI	GCATC	2 cut(s)	148, 408
Sfr274I	CTCGAG	1 cut(s)	477
SlaI	CTCGAG	1 cut(s)	477
SmaI	CCCGGG	1 cut(s)	590
SmlI	CTYRAG	3 cut(s)	285, 477, 628
SmoI	CTYRAG	3 cut(s)	285, 477, 628
SphI	GCATGC	1 cut(s)	309
Sse9I	AATT	4 cut(s)	532, 561, 651, 669
SsiI	CCGC	2 cut(s)	58, 404
SspMI	CTAG	2 cut(s)	74, 422
SstI	GAGCTC	1 cut(s)	644
StyD4I	CCNGG	7 cut(s)	199, 266, 406, 573, 587, 588, 733
StyI	CCWWGG	1 cut(s)	674
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	1 cut(s)	478
TasI	AATT	4 cut(s)	532, 561, 651, 669
TatI	WGTACW	1 cut(s)	43
TauI	GCSGC	1 cut(s)	406
TfiI	GAWTC	2 cut(s)	83, 233
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	4 cut(s)	65, 263, 302, 445
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	1 cut(s)	224
TspMI	CCCGGG	1 cut(s)	588
XagI	CCTNNNNNAGG	1 cut(s)	503
XapI	RAATTY	1 cut(s)	561
XceI	RCATGY	1 cut(s)	309
XhoI	CTCGAG	1 cut(s)	477
XmaI	CCCGGG	1 cut(s)	588
XmiI	GTMKAC	1 cut(s)	547
XspI	CTAG	2 cut(s)	74, 422
ZrmI	AGTACT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.