RLG00000033624

Phosphoenolpyruvate carboxylase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
29720875 .. 29727267
6393 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033624

Sequence Viewer

Length: 1257 bp
ATGGTAGTGAGTGGTATATCAAATATGGTAGTGAGTGGTATGTTTGATATGGGCACATGCAGTGAGTGGGATGAAGAAAAGAAACTGGAATTTCTAACAAGAGAGCTCAAAGGAAAAAGACAGCTAGTCCCGCCTAGCATGGAGGCAAGTGATGTCCTTGCTGTGGAGCTTTTGCAAAAAGATGCACGACTTGCCGTTAGTGGAGAGATAGGAAAGCTGCTGCGTGTGGTTCCTTTGTTTGAAACTGTAAAGGACTTGAGAGGAGCTGGCTCAATGATCAGGAAATTATTGTCCATTGATTGGTACAGGGAGCACATCATCAAGAACCATAACGGGCATAAAGAGATATCTATAGATGTTGTAGCTGCATGCAATGAATATGATATCAAAATTACCCTGTTTCATGGGAGAGGAGGAAGTATTGGTCGTGGAGGGGGCCCTACATATCTTGCCATTCAGTCCCAGCCGCCTGGCTCTGTGATGGAGAAGTATTCACCAATTCGCAAGTTAACAGCTCCTTATGTCTTGAACTTGGACGTTATTGATATGCTAGTGGTACTCTATGATCAACTGAGCAAGGAGAAATGGTACAGGCAAAAATTTGGGCTGCCGGAGATTGTTGTCAGACAGCTAGAGATATACACAACAGCTGCGCTGCTTACAACGTTGCGTCCACCACACCCTTCTCGAGAACAAAAGTCGGGTATCCTCATGGAGGAGATCACAAAGATCAGTTGTCAGAATTACAGAAGTGGTCTACGAAAATCCAAAATTCCTTACTTCCAGGAGGCTACACCCCAGGCTGAGCTTGGCTTCCTCAACATAGGAAGCCGCCCCTCAAGAAGAAAGAGCTCTACTGGAATTGGACATCTTCGGGCAATTCCATGGGTGTTTGCATGGACTCAAACCAGATTTGTTCTTCCAGCTTGGCTTGGAGTTGAACCAAGTTTGAGGGGGGTTTGTGGGAAGGGACACACTGAAGACTTGAAAGCAGAACATTATGAGCAAAATGGTCAAAATGCGAAGCCTAAGCCTCTCACAGTCCAGCTTCTCACTTCTATTCTTTCTTCCTCGATATATCTCTTCATCACTGTTCTCCGCTTCACCAACTCCACCCCTAATTCTCTCTACCTCTACTCCGATCTCCAAATCTCATCACAACTTCAACAGCATCTCCCTCACAATAGCGATACTTCGAGGCATCTGCCTCAGTCTCCCTCTGTTCCACCGCGCCCCTCCACTCCACTGCTCCTCTAG

Protein Analysis

419

Amino Acids

46.9

Weight (kDa)

9.35

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEPcase PF00311 47 - 114 6e-15 Phosphoenolpyruvate carboxylase
PEPcase PF00311 120 - 161 1.2e-15 Phosphoenolpyruvate carboxylase
PEPcase PF00311 198 - 329 1.8e-41 Phosphoenolpyruvate carboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 300
AccI GTMKAC 1 cut(s) 757
AccII CGCG 1 cut(s) 1231
AciI CCGC 5 cut(s) 131, 467, 832, 1099, 1229
AclI AACGTT 1 cut(s) 665
AcsI RAATTY 3 cut(s) 89, 599, 771
AcuI CTGAAG 1 cut(s) 999
AfaI GTAC 3 cut(s) 305, 558, 590
AfiI CCNNNNNNNGG 3 cut(s) 163, 300, 715
AgsI TTSAA 5 cut(s) 242, 529, 941, 988, 1166
AhdI GACNNNNNGTC 1 cut(s) 125
AjnI CCWGG 3 cut(s) 469, 783, 798
Alw21I GWGCWC 3 cut(s) 108, 315, 854
Alw26I GTCTC 1 cut(s) 1218
Ama87I CYCGRG 1 cut(s) 687
AoxI GGCC 1 cut(s) 436
ApaI GGGCCC 1 cut(s) 440
ApeKI GCWGC 6 cut(s) 217, 220, 365, 607, 650, 655
ApoI RAATTY 3 cut(s) 89, 599, 771
AspLEI GCGC 2 cut(s) 655, 1233
AspS9I GGNCC 2 cut(s) 436, 437
AsuHPI GGTGA 2 cut(s) 486, 1096
AvaI CYCGRG 1 cut(s) 687
BaeGI GKGCMC 2 cut(s) 56, 440
BanII GRGCYC 3 cut(s) 108, 440, 854
BbsI GAAGAC 1 cut(s) 987
Bbv12I GWGCWC 3 cut(s) 108, 315, 854
BbvI GCAGC 6 cut(s) 204, 207, 352, 594, 637, 642
BccI CCATC 1 cut(s) 475
BceAI ACGGC 1 cut(s) 179
BcgI CGANNNNNNTGC 2 cut(s) 1186, 1220
BciT130I CCWGG 3 cut(s) 471, 785, 800
BciVI GTATCC 1 cut(s) 716
BclI TGATCA 2 cut(s) 276, 565
BcoDI GTCTC 1 cut(s) 1218
BfaI CTAG 5 cut(s) 125, 135, 551, 632, 1255
BfmI CTRYAG 1 cut(s) 351
BfuI GTATCC 1 cut(s) 716
BisI GCNGC 8 cut(s) 218, 221, 366, 467, 608, 651, 656, 832
BlpI GCTNAGC 1 cut(s) 804
BlsI GCNGC 8 cut(s) 219, 222, 367, 468, 609, 652, 657, 833
Bme1390I CCNGG 3 cut(s) 471, 785, 800
BmeRI GACNNNNNGTC 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 687
BmgT120I GGNCC 2 cut(s) 436, 437
BmiI GGNNCC 3 cut(s) 231, 437, 438
BmrFI CCNGG 3 cut(s) 471, 785, 800
BmsI GCATC 3 cut(s) 172, 1180, 1210
BpiI GAAGAC 1 cut(s) 987
Bpu10I CCTNAGC 1 cut(s) 1029
Bpu1102I GCTNAGC 1 cut(s) 804
BpuEI CTTGAG 2 cut(s) 277, 823
BsaJI CCNNGG 2 cut(s) 798, 884
BsaXI ACNNNNNCTCC 6 cut(s) 572, 602, 1121, 1151, 1158, 1188
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 300, 715
Bse1I ACTGG 2 cut(s) 90, 862
Bse3DI GCAATG 1 cut(s) 379
BseBI CCWGG 3 cut(s) 471, 785, 800
BseDI CCNNGG 2 cut(s) 798, 884
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 3 cut(s) 163, 300, 715
BseMI GCAATG 1 cut(s) 379
BseMII CTCAG 3 cut(s) 563, 795, 1223
BseNI ACTGG 2 cut(s) 90, 862
BseRI GAGGAG 4 cut(s) 276, 426, 731, 1241
BseSI GKGCMC 2 cut(s) 56, 440
BseXI GCAGC 6 cut(s) 204, 207, 352, 594, 637, 642
BseYI CCCAGC 1 cut(s) 462
Bsh1236I CGCG 1 cut(s) 1231
BshFI GGCC 1 cut(s) 438
BsiHKAI GWGCWC 3 cut(s) 108, 315, 854
BsiHKCI CYCGRG 1 cut(s) 687
BsiSI CCGG 1 cut(s) 611
BslFI GGGAC 3 cut(s) 113, 445, 984
BslI CCNNNNNNNGG 3 cut(s) 163, 300, 715
BsmAI GTCTC 1 cut(s) 1218
BsmFI GGGAC 3 cut(s) 113, 445, 984
BsnI GGCC 1 cut(s) 438
BsoBI CYCGRG 1 cut(s) 687
Bsp120I GGGCCC 1 cut(s) 436
Bsp1286I GDGCHC 5 cut(s) 56, 108, 315, 440, 854
Bsp143I GATC 5 cut(s) 276, 565, 720, 729, 1141
Bsp1720I GCTNAGC 1 cut(s) 804
Bsp19I CCATGG 1 cut(s) 884
BspACI CCGC 5 cut(s) 131, 467, 832, 1099, 1229
BspANI GGCC 1 cut(s) 438
BspCNI CTCAG 3 cut(s) 564, 796, 1222
BspFNI CGCG 1 cut(s) 1231
BspLI GGNNCC 3 cut(s) 231, 437, 438
BsrDI GCAATG 1 cut(s) 379
BsrI ACTGG 2 cut(s) 90, 862
BssECI CCNNGG 2 cut(s) 798, 884
BssMI GATC 5 cut(s) 276, 565, 720, 729, 1141
BssT1I CCWWGG 1 cut(s) 884
Bst2UI CCWGG 3 cut(s) 471, 785, 800
Bst4CI ACNGT 3 cut(s) 247, 1042, 1093
Bst6I CTCTTC 1 cut(s) 1088
BstAPI GCANNNNNTGC 1 cut(s) 191
BstC8I GCNNGC 2 cut(s) 268, 370
BstDEI CTNAG 4 cut(s) 572, 804, 1029, 1209
BstDSI CCRYGG 1 cut(s) 884
BstENI CCTNNNNNAGG 1 cut(s) 713
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 1231
BstHHI GCGC 2 cut(s) 655, 1233
BstKTI GATC 5 cut(s) 279, 568, 723, 732, 1144
BstMAI GTCTC 1 cut(s) 1218
BstMBI GATC 5 cut(s) 276, 565, 720, 729, 1141
BstMWI GCNNNNNNNGC 2 cut(s) 130, 191
BstNI CCWGG 3 cut(s) 471, 785, 800
BstNSI RCATGY 2 cut(s) 60, 372
BstSCI CCNGG 3 cut(s) 469, 783, 798
BstSFI CTRYAG 1 cut(s) 351
BstSLI GKGCMC 2 cut(s) 56, 440
BstUI CGCG 1 cut(s) 1231
BstV1I GCAGC 6 cut(s) 204, 207, 352, 594, 637, 642
BstV2I GAAGAC 1 cut(s) 987
BstXI CCANNNNNNTGG 1 cut(s) 470
BsuI GTATCC 1 cut(s) 716
BsuRI GGCC 1 cut(s) 438
BtgI CCRYGG 1 cut(s) 884
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 2 cut(s) 67, 1244
BtsIMutI CAGTG 4 cut(s) 67, 975, 1089, 1244
Cac8I GCNNGC 2 cut(s) 268, 370
CfoI GCGC 2 cut(s) 655, 1233
Cfr13I GGNCC 2 cut(s) 436, 437
CseI GACGC 1 cut(s) 659
Csp6I GTAC 3 cut(s) 304, 557, 589
CviAII CATG 7 cut(s) 57, 139, 369, 404, 712, 885, 897
CviQI GTAC 3 cut(s) 304, 557, 589
DdeI CTNAG 4 cut(s) 572, 804, 1029, 1209
DpnI GATC 5 cut(s) 278, 567, 722, 731, 1143
DpnII GATC 5 cut(s) 276, 565, 720, 729, 1141
DriI GACNNNNNGTC 1 cut(s) 125
Eam1104I CTCTTC 1 cut(s) 1088
Eam1105I GACNNNNNGTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 1088
Ecl136II GAGCTC 2 cut(s) 106, 852
Eco130I CCWWGG 1 cut(s) 884
Eco24I GRGCYC 3 cut(s) 108, 440, 854
Eco32I GATATC 2 cut(s) 348, 385
Eco53kI GAGCTC 2 cut(s) 106, 852
Eco57I CTGAAG 1 cut(s) 999
Eco88I CYCGRG 1 cut(s) 687
EcoICRI GAGCTC 2 cut(s) 106, 852
EcoNI CCTNNNNNAGG 1 cut(s) 713
EcoO109I RGGNCCY 2 cut(s) 436, 437
EcoRII CCWGG 3 cut(s) 469, 783, 798
EcoRV GATATC 2 cut(s) 348, 385
EcoT14I CCWWGG 1 cut(s) 884
EcoT38I GRGCYC 3 cut(s) 108, 440, 854
ErhI CCWWGG 1 cut(s) 884
FaeI CATG 7 cut(s) 60, 142, 372, 407, 715, 888, 900
FaqI GGGAC 3 cut(s) 113, 445, 984
FatI CATG 7 cut(s) 56, 138, 368, 403, 711, 884, 896
FauI CCCGC 1 cut(s) 138
FbaI TGATCA 2 cut(s) 276, 565
FblI GTMKAC 1 cut(s) 757
Fnu4HI GCNGC 8 cut(s) 218, 221, 366, 467, 608, 651, 656, 832
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 3 cut(s) 108, 440, 854
Fsp4HI GCNGC 8 cut(s) 218, 221, 366, 467, 608, 651, 656, 832
FspBI CTAG 5 cut(s) 125, 135, 551, 632, 1255
GlaI GCGC 2 cut(s) 654, 1232
GluI GCNGC 8 cut(s) 218, 221, 366, 467, 608, 651, 656, 832
GsaI CCCAGC 1 cut(s) 466
HaeIII GGCC 1 cut(s) 438
HapII CCGG 1 cut(s) 611
HgaI GACGC 1 cut(s) 659
HhaI GCGC 2 cut(s) 655, 1233
Hin1II CATG 7 cut(s) 60, 142, 372, 407, 715, 888, 900
Hin6I GCGC 2 cut(s) 653, 1231
HinP1I GCGC 2 cut(s) 653, 1231
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HinfI GANTC 1 cut(s) 901
HpaI GTTAAC 1 cut(s) 510
HpaII CCGG 1 cut(s) 611
HphI GGTGA 2 cut(s) 486, 1096
Hpy166II GTNNAC 3 cut(s) 510, 674, 758
Hpy188I TCNGA 3 cut(s) 626, 741, 1141
Hpy188III TCNNGA 6 cut(s) 280, 322, 526, 687, 689, 840
Hpy8I GTNNAC 3 cut(s) 510, 674, 758
HpyAV CCTTC 2 cut(s) 693, 961
HpyCH4III ACNGT 3 cut(s) 247, 1042, 1093
HpyCH4IV ACGT 2 cut(s) 537, 665
HpyCH4V TGCA 6 cut(s) 60, 175, 185, 368, 372, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 191
HpyF3I CTNAG 4 cut(s) 572, 804, 1029, 1209
HpySE526I ACGT 2 cut(s) 537, 665
Hsp92II CATG 7 cut(s) 60, 142, 372, 407, 715, 888, 900
HspAI GCGC 2 cut(s) 653, 1231
Ksp22I TGATCA 2 cut(s) 276, 565
KspAI GTTAAC 1 cut(s) 510
Kzo9I GATC 5 cut(s) 276, 565, 720, 729, 1141
LmnI GCTCC 5 cut(s) 166, 263, 310, 520, 1254
Lsp1109I GCAGC 6 cut(s) 204, 207, 352, 594, 637, 642
LweI GCATC 3 cut(s) 172, 1180, 1210
MaeI CTAG 5 cut(s) 125, 135, 551, 632, 1255
MaeII ACGT 2 cut(s) 537, 665
MalI GATC 5 cut(s) 278, 567, 722, 731, 1143
MboI GATC 5 cut(s) 276, 565, 720, 729, 1141
MboII GAAGA 7 cut(s) 86, 855, 863, 911, 992, 1059, 1075
MhlI GDGCHC 5 cut(s) 56, 108, 315, 440, 854
MlyI GAGTC 1 cut(s) 895
MseI TTAA 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 650
MspI CCGG 1 cut(s) 611
MspR9I CCNGG 3 cut(s) 471, 785, 800
MvaI CCWGG 3 cut(s) 471, 785, 800
MvnI CGCG 1 cut(s) 1231
MwoI GCNNNNNNNGC 2 cut(s) 130, 191
NcoI CCATGG 1 cut(s) 884
NdeII GATC 5 cut(s) 276, 565, 720, 729, 1141
NlaIII CATG 7 cut(s) 60, 142, 372, 407, 715, 888, 900
NlaIV GGNNCC 3 cut(s) 231, 437, 438
NspI RCATGY 2 cut(s) 60, 372
PaeI GCATGC 1 cut(s) 372
PaeR7I CTCGAG 1 cut(s) 687
PflMI CCANNNNNTGG 1 cut(s) 300
PfoI TCCNGGA 1 cut(s) 783
PkrI GCNGC 8 cut(s) 219, 222, 367, 468, 609, 652, 657, 833
PleI GAGTC 1 cut(s) 895
PpsI GAGTC 1 cut(s) 895
Psp124BI GAGCTC 2 cut(s) 108, 854
Psp1406I AACGTT 1 cut(s) 665
Psp6I CCWGG 3 cut(s) 469, 783, 798
PspFI CCCAGC 1 cut(s) 462
PspGI CCWGG 3 cut(s) 469, 783, 798
PspN4I GGNNCC 3 cut(s) 231, 437, 438
PspOMI GGGCCC 1 cut(s) 436
PspPI GGNCC 2 cut(s) 436, 437
PvuII CAGCTG 1 cut(s) 650
RsaI GTAC 3 cut(s) 305, 558, 590
RsaNI GTAC 3 cut(s) 304, 557, 589
SacI GAGCTC 2 cut(s) 108, 854
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 8 cut(s) 218, 221, 366, 467, 608, 651, 656, 832
Sau3AI GATC 5 cut(s) 276, 565, 720, 729, 1141
Sau96I GGNCC 2 cut(s) 436, 437
SchI GAGTC 1 cut(s) 895
ScrFI CCNGG 3 cut(s) 471, 785, 800
SduI GDGCHC 5 cut(s) 56, 108, 315, 440, 854
SfaNI GCATC 3 cut(s) 172, 1180, 1210
SfcI CTRYAG 1 cut(s) 351
Sfr274I CTCGAG 1 cut(s) 687
SlaI CTCGAG 1 cut(s) 687
SmlI CTYRAG 3 cut(s) 256, 687, 838
SmoI CTYRAG 3 cut(s) 256, 687, 838
SphI GCATGC 1 cut(s) 372
SsiI CCGC 5 cut(s) 131, 467, 832, 1099, 1229
SspMI CTAG 5 cut(s) 125, 135, 551, 632, 1255
SstI GAGCTC 2 cut(s) 108, 854
StyD4I CCNGG 3 cut(s) 469, 783, 798
StyI CCWWGG 1 cut(s) 884
TaaI ACNGT 3 cut(s) 247, 1042, 1093
TaiI ACGT 2 cut(s) 540, 668
TaqI TCGA 3 cut(s) 688, 1073, 1196
TauI GCSGC 2 cut(s) 469, 834
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 4 cut(s) 67, 982, 1096, 1251
TseI GCWGC 6 cut(s) 217, 220, 365, 607, 650, 655
TspDTI ATGAA 4 cut(s) 87, 390, 392, 1075
TspRI CASTG 4 cut(s) 67, 982, 1096, 1251
Van91I CCANNNNNTGG 1 cut(s) 300
XagI CCTNNNNNAGG 1 cut(s) 713
XapI RAATTY 3 cut(s) 89, 599, 771
XceI RCATGY 2 cut(s) 60, 372
XcmI CCANNNNNNNNNTGG 1 cut(s) 806
XhoI CTCGAG 1 cut(s) 687
XmiI GTMKAC 1 cut(s) 757
XspI CTAG 5 cut(s) 125, 135, 551, 632, 1255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.