Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000084.1

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Forward (+)

73472 .. 75786

Gene Structure 2315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000084.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atggaggagatctcaaagatcagttgtcagaattacaggagtggtctacgaaaatccagaattccttacttccaggaggctacaccccaggctgagcttggcttcctcaacataggaagctggccctcaagaagaaggagctctactggaattggacattttcgggcaattccatgggtgtttgcatggactcaaaccagatttgttcttctagcttggcttggagttgaacctgggcattttactgctacctgggaacttttcaaagctcaagaggatgttgtagctgcatgcaataagtatgatattaaactaaccttgtttcatgggagaggaggaagtattggtcgtggagggggccctgcatatcttgccagtcaatcccagccgcctggctctgcgatggagaagaattcaccaattcgcaagttaacagctccttatgtcttgaacttggacgttattgatatgccagtgcaaaaatttgggctgtcggagattgctgtcagacagctagagatatacacaatagctgtgctgcttgcaatgttgcgtccaccacacccttctcgagaacaaaagtggggtaacctcatggaggagatctcaaagatcaattgtcagaattacaggagtgatctacaaaaatctagaattctttacttcctggaggctacaccccaggctgagcttggcttcctcaacataggaagccgcccctccagaagaaagagctctactggaattggacatattcgggcaattccatgggtgtttgcatggactcaaaccagatttgttcttccagcttggcttggagttgaaccaggtttgaggggggtttgtgggaagggacacactgaagacttgaaaacagaacattatgaggtccacccattgagtattgaaacccaattttatcataatcttcttcaagaaatcccattccaatttgtcataagccttacttatatcaagtttcagagccataaaaccttcttgtcctctacgcagcctgtgcatatagtgagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

344

Amino Acids

39.0

Weight (kDa)

9.53

Isoelectric Point (pI)

59.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	46
AciI	CCGC	2 cut(s)	389, 715
AcsI	RAATTY	4 cut(s)	60, 412, 482, 654
AcuI	CTGAAG	1 cut(s)	882
AfiI	CCNNNNNNNGG	1 cut(s)	598
AgsI	TTSAA	7 cut(s)	230, 265, 451, 824, 871, 908, 935
AjnI	CCWGG	8 cut(s)	72, 87, 232, 251, 391, 666, 681, 826
Alw21I	GWGCWC	2 cut(s)	143, 737
Ama87I	CYCGRG	1 cut(s)	570
AoxI	GGCC	2 cut(s)	122, 358
ApaI	GGGCCC	1 cut(s)	362
ApeKI	GCWGC	3 cut(s)	287, 538, 1012
ApoI	RAATTY	4 cut(s)	60, 412, 482, 654
AspS9I	GGNCC	4 cut(s)	123, 358, 359, 889
AsuHPI	GGTGA	1 cut(s)	408
AvaI	CYCGRG	1 cut(s)	570
AvaII	GGWCC	1 cut(s)	889
BaeGI	GKGCMC	1 cut(s)	362
BanII	GRGCYC	3 cut(s)	143, 362, 737
BarI	GAAGNNNNNNTAC	2 cut(s)	127, 159
BbsI	GAAGAC	1 cut(s)	870
Bbv12I	GWGCWC	2 cut(s)	143, 737
BbvI	GCAGC	3 cut(s)	274, 525, 1024
BccI	CCATC	1 cut(s)	397
BciT130I	CCWGG	8 cut(s)	74, 89, 234, 253, 393, 668, 683, 828
BfaI	CTAG	4 cut(s)	212, 515, 651, 1033
BglII	AGATCT	2 cut(s)	9, 603
BisI	GCNGC	5 cut(s)	288, 389, 539, 715, 1013
BlpI	GCTNAGC	2 cut(s)	93, 687
BlsI	GCNGC	5 cut(s)	289, 390, 540, 716, 1014
Bme1390I	CCNGG	8 cut(s)	74, 89, 234, 253, 393, 668, 683, 828
Bme18I	GGWCC	1 cut(s)	889
BmeT110I	CYCGRG	1 cut(s)	570
BmgT120I	GGNCC	4 cut(s)	123, 358, 359, 889
BmiI	GGNNCC	2 cut(s)	359, 360
BmrFI	CCNGG	8 cut(s)	74, 89, 234, 253, 393, 668, 683, 828
BpiI	GAAGAC	1 cut(s)	870
BplI	GAGNNNNNCTC	3 cut(s)	28, 590, 622
BpmI	CTGGAG	2 cut(s)	689, 706
Bpu1102I	GCTNAGC	2 cut(s)	93, 687
BpuEI	CTTGAG	2 cut(s)	112, 255
BsaJI	CCNNGG	6 cut(s)	87, 173, 233, 252, 681, 767
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse1I	ACTGG	4 cut(s)	151, 375, 473, 745
Bse3DI	GCAATG	1 cut(s)	552
BseBI	CCWGG	8 cut(s)	74, 89, 234, 253, 393, 668, 683, 828
BseDI	CCNNGG	6 cut(s)	87, 173, 233, 252, 681, 767
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	2 cut(s)	84, 678
BseNI	ACTGG	4 cut(s)	151, 375, 473, 745
BseRI	GAGGAG	3 cut(s)	20, 348, 614
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	274, 525, 1024
BseYI	CCCAGC	1 cut(s)	384
BshFI	GGCC	2 cut(s)	124, 360
BsiHKAI	GWGCWC	2 cut(s)	143, 737
BsiHKCI	CYCGRG	1 cut(s)	570
BslFI	GGGAC	1 cut(s)	867
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmFI	GGGAC	1 cut(s)	867
BsnI	GGCC	2 cut(s)	124, 360
BsoBI	CYCGRG	1 cut(s)	570
Bsp120I	GGGCCC	1 cut(s)	358
Bsp1286I	GDGCHC	3 cut(s)	143, 362, 737
Bsp143I	GATC	5 cut(s)	9, 18, 603, 612, 637
Bsp1720I	GCTNAGC	2 cut(s)	93, 687
Bsp19I	CCATGG	2 cut(s)	173, 767
BspACI	CCGC	2 cut(s)	389, 715
BspANI	GGCC	2 cut(s)	124, 360
BspCNI	CTCAG	2 cut(s)	85, 679
BspLI	GGNNCC	2 cut(s)	359, 360
BsrDI	GCAATG	1 cut(s)	552
BsrI	ACTGG	4 cut(s)	151, 375, 473, 745
BssECI	CCNNGG	6 cut(s)	87, 173, 233, 252, 681, 767
BssMI	GATC	5 cut(s)	9, 18, 603, 612, 637
BssT1I	CCWWGG	2 cut(s)	173, 767
Bst2UI	CCWGG	8 cut(s)	74, 89, 234, 253, 393, 668, 683, 828
BstAPI	GCANNNNNTGC	2 cut(s)	371, 1018
BstC8I	GCNNGC	3 cut(s)	122, 292, 543
BstDEI	CTNAG	2 cut(s)	93, 687
BstDSI	CCRYGG	2 cut(s)	173, 767
BstEII	GGTNACC	1 cut(s)	587
BstENI	CCTNNNNNAGG	1 cut(s)	596
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	5 cut(s)	12, 21, 606, 615, 640
BstMBI	GATC	5 cut(s)	9, 18, 603, 612, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 1018
BstNI	CCWGG	8 cut(s)	74, 89, 234, 253, 393, 668, 683, 828
BstNSI	RCATGY	1 cut(s)	294
BstPI	GGTNACC	1 cut(s)	587
BstSCI	CCNGG	8 cut(s)	72, 87, 232, 251, 391, 666, 681, 826
BstSLI	GKGCMC	1 cut(s)	362
BstV1I	GCAGC	3 cut(s)	274, 525, 1024
BstV2I	GAAGAC	1 cut(s)	870
BstX2I	RGATCY	2 cut(s)	9, 603
BstXI	CCANNNNNNTGG	1 cut(s)	392
BstYI	RGATCY	2 cut(s)	9, 603
BsuRI	GGCC	2 cut(s)	124, 360
BtgI	CCRYGG	2 cut(s)	173, 767
BtgZI	GCGATG	1 cut(s)	416
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	2 cut(s)	480, 858
Cac8I	GCNNGC	3 cut(s)	122, 292, 543
Cfr13I	GGNCC	4 cut(s)	123, 358, 359, 889
CseI	GACGC	1 cut(s)	542
CsiI	ACCWGGT	1 cut(s)	826
CviAII	CATG	7 cut(s)	174, 186, 291, 326, 595, 768, 780
DdeI	CTNAG	2 cut(s)	93, 687
DpnI	GATC	5 cut(s)	11, 20, 605, 614, 639
DpnII	GATC	5 cut(s)	9, 18, 603, 612, 637
Ecl136II	GAGCTC	2 cut(s)	141, 735
Eco130I	CCWWGG	2 cut(s)	173, 767
Eco24I	GRGCYC	3 cut(s)	143, 362, 737
Eco47I	GGWCC	1 cut(s)	889
Eco53kI	GAGCTC	2 cut(s)	141, 735
Eco57I	CTGAAG	1 cut(s)	882
Eco88I	CYCGRG	1 cut(s)	570
Eco91I	GGTNACC	1 cut(s)	587
EcoICRI	GAGCTC	2 cut(s)	141, 735
EcoNI	CCTNNNNNAGG	1 cut(s)	596
EcoO109I	RGGNCCY	2 cut(s)	358, 359
EcoO65I	GGTNACC	1 cut(s)	587
EcoRI	GAATTC	3 cut(s)	60, 412, 654
EcoRII	CCWGG	8 cut(s)	72, 87, 232, 251, 391, 666, 681, 826
EcoT14I	CCWWGG	2 cut(s)	173, 767
EcoT38I	GRGCYC	3 cut(s)	143, 362, 737
ErhI	CCWWGG	2 cut(s)	173, 767
FaeI	CATG	7 cut(s)	177, 189, 294, 329, 598, 771, 783
FalI	AAGNNNNNCTT	2 cut(s)	952, 984
FaqI	GGGAC	1 cut(s)	867
FatI	CATG	7 cut(s)	173, 185, 290, 325, 594, 767, 779
FblI	GTMKAC	1 cut(s)	46
Fnu4HI	GCNGC	5 cut(s)	288, 389, 539, 715, 1013
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	3 cut(s)	143, 362, 737
Fsp4HI	GCNGC	5 cut(s)	288, 389, 539, 715, 1013
FspBI	CTAG	4 cut(s)	212, 515, 651, 1033
GluI	GCNGC	5 cut(s)	288, 389, 539, 715, 1013
GsaI	CCCAGC	1 cut(s)	388
GsuI	CTGGAG	2 cut(s)	689, 706
HaeIII	GGCC	2 cut(s)	124, 360
HgaI	GACGC	1 cut(s)	542
Hin1II	CATG	7 cut(s)	177, 189, 294, 329, 598, 771, 783
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	2 cut(s)	190, 784
HpaI	GTTAAC	1 cut(s)	432
HphI	GGTGA	1 cut(s)	408
Hpy166II	GTNNAC	4 cut(s)	47, 432, 557, 892
Hpy188I	TCNGA	5 cut(s)	30, 496, 509, 624, 984
Hpy188III	TCNNGA	9 cut(s)	57, 129, 272, 448, 570, 572, 651, 723, 935
Hpy8I	GTNNAC	4 cut(s)	47, 432, 557, 892
HpyAV	CCTTC	4 cut(s)	129, 576, 844, 1006
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	8 cut(s)	185, 290, 294, 365, 478, 545, 779, 1021
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 1018
HpyF3I	CTNAG	2 cut(s)	93, 687
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	7 cut(s)	177, 189, 294, 329, 598, 771, 783
KspAI	GTTAAC	1 cut(s)	432
Kzo9I	GATC	5 cut(s)	9, 18, 603, 612, 637
LmnI	GCTCC	2 cut(s)	138, 442
Lsp1109I	GCAGC	3 cut(s)	274, 525, 1024
MabI	ACCWGGT	1 cut(s)	826
MaeI	CTAG	4 cut(s)	212, 515, 651, 1033
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	5 cut(s)	11, 20, 605, 614, 639
MboI	GATC	5 cut(s)	9, 18, 603, 612, 637
MboII	GAAGA	8 cut(s)	144, 200, 421, 738, 794, 875, 920, 923
MfeI	CAATTG	1 cut(s)	616
MflI	RGATCY	2 cut(s)	9, 603
MhlI	GDGCHC	3 cut(s)	143, 362, 737
MlyI	GAGTC	2 cut(s)	184, 778
MmeI	TCCRAC	1 cut(s)	474
MseI	TTAA	2 cut(s)	309, 431
MspR9I	CCNGG	8 cut(s)	74, 89, 234, 253, 393, 668, 683, 828
MunI	CAATTG	1 cut(s)	616
MvaI	CCWGG	8 cut(s)	74, 89, 234, 253, 393, 668, 683, 828
MwoI	GCNNNNNNNGC	2 cut(s)	371, 1018
NcoI	CCATGG	2 cut(s)	173, 767
NdeII	GATC	5 cut(s)	9, 18, 603, 612, 637
NlaIII	CATG	7 cut(s)	177, 189, 294, 329, 598, 771, 783
NlaIV	GGNNCC	2 cut(s)	359, 360
NspI	RCATGY	1 cut(s)	294
PaeI	GCATGC	1 cut(s)	294
PaeR7I	CTCGAG	1 cut(s)	570
PfoI	TCCNGGA	2 cut(s)	72, 666
PkrI	GCNGC	5 cut(s)	289, 390, 540, 716, 1014
PleI	GAGTC	2 cut(s)	184, 778
PpsI	GAGTC	2 cut(s)	184, 778
Psp124BI	GAGCTC	2 cut(s)	143, 737
Psp6I	CCWGG	8 cut(s)	72, 87, 232, 251, 391, 666, 681, 826
PspEI	GGTNACC	1 cut(s)	587
PspFI	CCCAGC	1 cut(s)	384
PspGI	CCWGG	8 cut(s)	72, 87, 232, 251, 391, 666, 681, 826
PspN4I	GGNNCC	2 cut(s)	359, 360
PspOMI	GGGCCC	1 cut(s)	358
PspPI	GGNCC	4 cut(s)	123, 358, 359, 889
PsuI	RGATCY	2 cut(s)	9, 603
SacI	GAGCTC	2 cut(s)	143, 737
SaqAI	TTAA	2 cut(s)	309, 431
SatI	GCNGC	5 cut(s)	288, 389, 539, 715, 1013
Sau3AI	GATC	5 cut(s)	9, 18, 603, 612, 637
Sau96I	GGNCC	4 cut(s)	123, 358, 359, 889
SchI	GAGTC	2 cut(s)	184, 778
ScrFI	CCNGG	8 cut(s)	74, 89, 234, 253, 393, 668, 683, 828
SduI	GDGCHC	3 cut(s)	143, 362, 737
SexAI	ACCWGGT	1 cut(s)	826
Sfr274I	CTCGAG	1 cut(s)	570
SinI	GGWCC	1 cut(s)	889
SlaI	CTCGAG	1 cut(s)	570
SmlI	CTYRAG	3 cut(s)	127, 270, 570
SmoI	CTYRAG	3 cut(s)	127, 270, 570
SphI	GCATGC	1 cut(s)	294
SsiI	CCGC	2 cut(s)	389, 715
SspMI	CTAG	4 cut(s)	212, 515, 651, 1033
SstI	GAGCTC	2 cut(s)	143, 737
StyD4I	CCNGG	8 cut(s)	72, 87, 232, 251, 391, 666, 681, 826
StyI	CCWWGG	2 cut(s)	173, 767
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	1 cut(s)	571
TauI	GCSGC	2 cut(s)	391, 717
Tru1I	TTAA	2 cut(s)	309, 431
Tru9I	TTAA	2 cut(s)	309, 431
TscAI	CASTG	2 cut(s)	480, 865
TseI	GCWGC	3 cut(s)	287, 538, 1012
TspDTI	ATGAA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	480, 865
VpaK11BI	GGWCC	1 cut(s)	889
XagI	CCTNNNNNAGG	1 cut(s)	596
XapI	RAATTY	4 cut(s)	60, 412, 482, 654
XbaI	TCTAGA	1 cut(s)	650
XceI	RCATGY	1 cut(s)	294
XcmI	CCANNNNNNNNNTGG	2 cut(s)	95, 689
XhoI	CTCGAG	1 cut(s)	570
XmiI	GTMKAC	1 cut(s)	46
XspI	CTAG	4 cut(s)	212, 515, 651, 1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.