Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Reverse (-)

69346390 .. 69346635

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33976

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGAAGGTGTGCTCCATGGGTGTTTGCATGGACTCGAACCAGGATCTTCTTTTCTGTAGGAAGAGCTCTACTGGAATTGGACATCTTTGGGCAATTCCATGGGTGTTTGCATGGACTCCAACCAGATTTGTTCTTCCAGCTTGGGTGGAGTTAAACCAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

54

Amino Acids

6.17

Weight (kDa)

7.75

Isoelectric Point (pI)

19.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	20 - 49	2.8e-09	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	51
AjnI	CCWGG	2 cut(s)	39, 156
AluBI	AGCT	2 cut(s)	66, 140
AluI	AGCT	2 cut(s)	66, 140
Alw21I	GWGCWC	2 cut(s)	14, 68
AlwI	GGATC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	68
Bbv12I	GWGCWC	2 cut(s)	14, 68
BciT130I	CCWGG	2 cut(s)	41, 158
BfmI	CTRYAG	1 cut(s)	55
Bme1390I	CCNGG	2 cut(s)	41, 158
BmrFI	CCNGG	2 cut(s)	41, 158
BsaJI	CCNNGG	2 cut(s)	15, 98
Bse1I	ACTGG	1 cut(s)	76
BseBI	CCWGG	2 cut(s)	41, 158
BseDI	CCNNGG	2 cut(s)	15, 98
BseNI	ACTGG	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	14, 68
Bsp1286I	GDGCHC	2 cut(s)	14, 68
Bsp143I	GATC	1 cut(s)	43
Bsp19I	CCATGG	2 cut(s)	15, 98
BspPI	GGATC	1 cut(s)	51
BspQI	GCTCTTC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	15, 98
BssMI	GATC	1 cut(s)	43
BssT1I	CCWWGG	2 cut(s)	15, 98
Bst2UI	CCWGG	2 cut(s)	41, 158
Bst6I	CTCTTC	1 cut(s)	56
BstDSI	CCRYGG	2 cut(s)	15, 98
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstNI	CCWGG	2 cut(s)	41, 158
BstSCI	CCNGG	2 cut(s)	39, 156
BstSFI	CTRYAG	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BtgI	CCRYGG	2 cut(s)	15, 98
CsiI	ACCWGGT	1 cut(s)	156
CviAII	CATG	4 cut(s)	16, 28, 99, 111
CviJI	RGCY	2 cut(s)	66, 140
CviKI_1	RGCY	2 cut(s)	66, 140
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	66
Eco130I	CCWWGG	2 cut(s)	15, 98
Eco24I	GRGCYC	1 cut(s)	68
Eco53kI	GAGCTC	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	66
EcoRII	CCWGG	2 cut(s)	39, 156
EcoT14I	CCWWGG	2 cut(s)	15, 98
EcoT38I	GRGCYC	1 cut(s)	68
ErhI	CCWWGG	2 cut(s)	15, 98
FaeI	CATG	4 cut(s)	19, 31, 102, 114
FaiI	YATR	4 cut(s)	17, 29, 100, 112
FatI	CATG	4 cut(s)	15, 27, 98, 110
FriOI	GRGCYC	1 cut(s)	68
Hin1II	CATG	4 cut(s)	19, 31, 102, 114
HinfI	GANTC	2 cut(s)	32, 115
HpyCH4V	TGCA	2 cut(s)	27, 110
Hsp92II	CATG	4 cut(s)	19, 31, 102, 114
Kzo9I	GATC	1 cut(s)	43
LguI	GCTCTTC	1 cut(s)	56
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	6 cut(s)	26, 53, 57, 136, 143, 150
MabI	ACCWGGT	1 cut(s)	156
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	3 cut(s)	38, 73, 125
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	2 cut(s)	14, 68
MluCI	AATT	2 cut(s)	75, 93
MlyI	GAGTC	2 cut(s)	26, 109
MmeI	TCCRAC	1 cut(s)	143
MseI	TTAA	2 cut(s)	152, 163
MspR9I	CCNGG	2 cut(s)	41, 158
MvaI	CCWGG	2 cut(s)	41, 158
NcoI	CCATGG	2 cut(s)	15, 98
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	4 cut(s)	19, 31, 102, 114
PciSI	GCTCTTC	1 cut(s)	56
PleI	GAGTC	2 cut(s)	26, 109
PpsI	GAGTC	2 cut(s)	26, 109
Psp124BI	GAGCTC	1 cut(s)	68
Psp6I	CCWGG	2 cut(s)	39, 156
PspGI	CCWGG	2 cut(s)	39, 156
PsuI	RGATCY	1 cut(s)	43
SacI	GAGCTC	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	152, 163
Sau3AI	GATC	1 cut(s)	43
SchI	GAGTC	2 cut(s)	26, 109
ScrFI	CCNGG	2 cut(s)	41, 158
SduI	GDGCHC	2 cut(s)	14, 68
SetI	ASST	4 cut(s)	9, 68, 142, 162
SexAI	ACCWGGT	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	55
Sse9I	AATT	2 cut(s)	75, 93
SstI	GAGCTC	1 cut(s)	68
StyD4I	CCNGG	2 cut(s)	39, 156
StyI	CCWWGG	2 cut(s)	15, 98
TaqI	TCGA	1 cut(s)	35
TasI	AATT	2 cut(s)	75, 93
Tru1I	TTAA	2 cut(s)	152, 163
Tru9I	TTAA	2 cut(s)	152, 163
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.