Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Reverse (-)

18256975 .. 18257962

Gene Structure 988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G008440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGGCACATGCAGTGAGTGGGATGAAGAAAAGATACTGGAATTTCTAACAAGAGAGCTCAAAGGAAAAAGACTGCTAGTCCCACCTAGCATGGAGGGTACTCTACGATCAACTGAGCAAGGAGAAATGGTACAGTCAAAATTTGGGCAGTCGATCACAGATTGCACTCAGACAGCTGGAGGTGTATTGCTTGCAACGTTGCATCCACCACACCCTCCTCAAGAACAAAAGTGTAGTCTCATGGAGGAGATCTCAAAGATCAGTTGTCAGAATTACTGGAGCGTAGTCTACAAAAATCCAGAATTCCTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

104

Amino Acids

11.75

Weight (kDa)

5.13

Isoelectric Point (pI)

55.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	30 - 103	2.9e-12	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	288
AclI	AACGTT	1 cut(s)	197
AcsI	RAATTY	3 cut(s)	41, 140, 302
AfaI	GTAC	2 cut(s)	100, 132
AhdI	GACNNNNNGTC	1 cut(s)	77
AluBI	AGCT	2 cut(s)	58, 176
AluI	AGCT	2 cut(s)	58, 176
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	242
ApoI	RAATTY	3 cut(s)	41, 140, 302
ArsI	GACNNNNNNTTYG	2 cut(s)	220, 252
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	60
BarI	GAAGNNNNNNTAC	2 cut(s)	18, 50
Bbv12I	GWGCWC	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	2 cut(s)	77, 87
BglII	AGATCT	1 cut(s)	249
BmeRI	GACNNNNNGTC	1 cut(s)	77
BmsI	GCATC	1 cut(s)	211
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
BpmI	CTGGAG	2 cut(s)	198, 298
BpuEI	CTTGAG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bse1I	ACTGG	2 cut(s)	42, 281
BseGI	GGATG	2 cut(s)	28, 202
BseMII	CTCAG	2 cut(s)	105, 182
BseNI	ACTGG	2 cut(s)	42, 281
BseRI	GAGGAG	2 cut(s)	207, 260
BseSI	GKGCMC	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	8, 60
Bsp143I	GATC	4 cut(s)	107, 153, 249, 258
BspCNI	CTCAG	2 cut(s)	106, 181
BsrI	ACTGG	2 cut(s)	42, 281
BssMI	GATC	4 cut(s)	107, 153, 249, 258
Bst4CI	ACNGT	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	2 cut(s)	114, 168
BstF5I	GGATG	2 cut(s)	28, 202
BstKTI	GATC	4 cut(s)	110, 156, 252, 261
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	4 cut(s)	107, 153, 249, 258
BstNSI	RCATGY	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	28, 202
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	99, 131
CviAII	CATG	3 cut(s)	9, 91, 241
CviJI	RGCY	2 cut(s)	58, 176
CviKI_1	RGCY	2 cut(s)	58, 176
CviQI	GTAC	2 cut(s)	99, 131
DdeI	CTNAG	2 cut(s)	114, 168
DpnI	GATC	4 cut(s)	109, 155, 251, 260
DpnII	GATC	4 cut(s)	107, 153, 249, 258
DriI	GACNNNNNGTC	1 cut(s)	77
Eam1105I	GACNNNNNGTC	1 cut(s)	77
Ecl136II	GAGCTC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	58
EcoICRI	GAGCTC	1 cut(s)	58
EcoRI	GAATTC	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	60
FaeI	CATG	3 cut(s)	12, 94, 244
FaiI	YATR	3 cut(s)	10, 92, 242
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	3 cut(s)	8, 90, 240
FblI	GTMKAC	1 cut(s)	288
FokI	GGATG	2 cut(s)	35, 189
FriOI	GRGCYC	1 cut(s)	60
FspBI	CTAG	2 cut(s)	77, 87
GsuI	CTGGAG	2 cut(s)	198, 298
Hin1II	CATG	3 cut(s)	12, 94, 244
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	171, 270
Hpy188III	TCNNGA	2 cut(s)	221, 299
Hpy8I	GTNNAC	1 cut(s)	289
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	4 cut(s)	12, 165, 194, 202
HpyF3I	CTNAG	2 cut(s)	114, 168
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	3 cut(s)	12, 94, 244
Kzo9I	GATC	4 cut(s)	107, 153, 249, 258
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	3 cut(s)	23, 162, 262
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	2 cut(s)	77, 87
MaeII	ACGT	1 cut(s)	197
MalI	GATC	4 cut(s)	109, 155, 251, 260
MboI	GATC	4 cut(s)	107, 153, 249, 258
MboII	GAAGA	1 cut(s)	38
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	2 cut(s)	8, 60
MluCI	AATT	4 cut(s)	41, 140, 271, 302
MnlI	CCTC	5 cut(s)	88, 173, 225, 228, 238
MseI	TTAA	1 cut(s)	313
MspA1I	CMGCKG	1 cut(s)	176
NdeII	GATC	4 cut(s)	107, 153, 249, 258
NlaIII	CATG	3 cut(s)	12, 94, 244
NspI	RCATGY	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	60
Psp1406I	AACGTT	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	2 cut(s)	100, 132
RsaNI	GTAC	2 cut(s)	99, 131
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	313
Sau3AI	GATC	4 cut(s)	107, 153, 249, 258
SduI	GDGCHC	2 cut(s)	8, 60
SetI	ASST	5 cut(s)	60, 88, 178, 184, 200
SfaNI	GCATC	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse9I	AATT	4 cut(s)	41, 140, 271, 302
SspMI	CTAG	2 cut(s)	77, 87
SstI	GAGCTC	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	135
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	152
TasI	AATT	4 cut(s)	41, 140, 271, 302
Tru1I	TTAA	1 cut(s)	313
Tru9I	TTAA	1 cut(s)	313
TscAI	CASTG	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	3 cut(s)	41, 140, 302
XceI	RCATGY	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	2 cut(s)	77, 87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.