Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Reverse (-)

63884563 .. 63889260

Gene Structure 4698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00044830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGGCACGCAGGAAGAAAAATGTGCGCAAGTCTAGGTCATATTGCATTGGGGCAGGAATCTGGTAGACATGGGCAGTTGGGCACATACAGTGAGTGGGATGAAGAAAAGAAACTGGAATTTCTAACAAGAGAGCTCAAAGGAAAAAGACCGCTAATCCCACTTAGCATGAAGGCAAGTGACATCCTTGCTGTGGAGCTTTTGCAAAAAGATGCACGACTTGCCGTTAGTGGAGAGATAGGAAAGCCGTGTCCTGGTGGAACATGCGGGGAGTTTTACTGCTGCCGGGAACTTTACAAAGCTCAAGAGGATGTTGTAGCTGCATGCAATGAGTATGATGTCAAAGTTATCCTGTTTCATGGGAGAGGAGGAAGTATTGGTCGTGGAGGGGGCCCTACATATCTTGCCATTCGGTCCCGGCCGCCCGGCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

144

Amino Acids

15.55

Weight (kDa)

8.54

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	27 - 62	8.2e-06	Phosphoenolpyruvate carboxylase
PEPcase	PF00311	90 - 144	1.9e-18	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	28
AccI	GTMKAC	1 cut(s)	67
AciI	CCGC	3 cut(s)	152, 267, 422
AcoI	YGGCCR	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	193, 254
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	4 cut(s)	136, 199, 302, 320
AluI	AGCT	4 cut(s)	136, 199, 302, 320
Alw21I	GWGCWC	1 cut(s)	138
AoxI	GGCC	2 cut(s)	391, 419
ApaI	GGGCCC	1 cut(s)	395
ApeKI	GCWGC	2 cut(s)	282, 320
ApoI	RAATTY	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	3 cut(s)	391, 392, 414
AsuC2I	CCSGG	3 cut(s)	287, 418, 426
AvaII	GGWCC	1 cut(s)	414
BaeGI	GKGCMC	3 cut(s)	9, 86, 395
BanII	GRGCYC	2 cut(s)	138, 395
BauI	CACGAG	1 cut(s)	430
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	269, 307
BceAI	ACGGC	2 cut(s)	209, 232
BciT130I	CCWGG	1 cut(s)	255
BcnI	CCSGG	3 cut(s)	287, 418, 426
BfaI	CTAG	1 cut(s)	35
BisI	GCNGC	3 cut(s)	283, 321, 422
BlsI	GCNGC	3 cut(s)	284, 322, 423
Bme1390I	CCNGG	4 cut(s)	255, 287, 418, 426
Bme18I	GGWCC	1 cut(s)	414
BmgT120I	GGNCC	3 cut(s)	391, 392, 414
BmiI	GGNNCC	3 cut(s)	392, 393, 416
BmrFI	CCNGG	4 cut(s)	255, 287, 418, 426
BmsI	GCATC	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	288
BpuMI	CCSGG	3 cut(s)	287, 418, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 254
Bse1I	ACTGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	255
BseGI	GGATG	3 cut(s)	106, 183, 316
BseLI	CCNNNNNNNGG	2 cut(s)	193, 254
BseMI	GCAATG	1 cut(s)	334
BseNI	ACTGG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	381
BseSI	GKGCMC	3 cut(s)	9, 86, 395
BseX3I	CGGCCG	1 cut(s)	419
BseXI	GCAGC	2 cut(s)	269, 307
Bsh1285I	CGRYCG	1 cut(s)	422
BshFI	GGCC	2 cut(s)	393, 421
BsiEI	CGRYCG	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	3 cut(s)	286, 418, 426
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	2 cut(s)	193, 254
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	393, 421
Bsp120I	GGGCCC	1 cut(s)	391
Bsp1286I	GDGCHC	4 cut(s)	9, 86, 138, 395
BspACI	CCGC	3 cut(s)	152, 267, 422
BspANI	GGCC	2 cut(s)	393, 421
BspLI	GGNNCC	3 cut(s)	392, 393, 416
BsrDI	GCAATG	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	120
BssSI	CACGAG	1 cut(s)	430
Bst2BI	CACGAG	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	92
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	9, 325
BstDEI	CTNAG	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	106, 183, 316
BstHHI	GCGC	1 cut(s)	29
BstMCI	CGRYCG	1 cut(s)	422
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	2 cut(s)	267, 327
BstSCI	CCNGG	4 cut(s)	253, 285, 416, 424
BstSLI	GKGCMC	3 cut(s)	9, 86, 395
BstV1I	GCAGC	2 cut(s)	269, 307
BstZI	CGGCCG	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	393, 421
BtsCI	GGATG	3 cut(s)	106, 183, 316
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	9, 325
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	3 cut(s)	391, 392, 414
CviAII	CATG	5 cut(s)	71, 169, 264, 324, 359
CviJI	RGCY	8 cut(s)	136, 199, 247, 302, 320, 393, 421, 429
CviKI_1	RGCY	8 cut(s)	136, 199, 247, 302, 320, 393, 421, 429
DdeI	CTNAG	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	419
EagI	CGGCCG	1 cut(s)	419
Ecl136II	GAGCTC	1 cut(s)	136
EclXI	CGGCCG	1 cut(s)	419
Eco24I	GRGCYC	2 cut(s)	138, 395
Eco47I	GGWCC	1 cut(s)	414
Eco52I	CGGCCG	1 cut(s)	419
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoO109I	RGGNCCY	2 cut(s)	391, 392
EcoRII	CCWGG	1 cut(s)	253
EcoT38I	GRGCYC	2 cut(s)	138, 395
FaeI	CATG	5 cut(s)	74, 172, 267, 327, 362
FaiI	YATR	9 cut(s)	42, 72, 88, 170, 265, 325, 336, 360, 400
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	5 cut(s)	70, 168, 263, 323, 358
FauI	CCCGC	1 cut(s)	260
FblI	GTMKAC	1 cut(s)	67
Fnu4HI	GCNGC	3 cut(s)	283, 321, 422
FokI	GGATG	3 cut(s)	113, 170, 323
FriOI	GRGCYC	2 cut(s)	138, 395
Fsp4HI	GCNGC	3 cut(s)	283, 321, 422
FspBI	CTAG	1 cut(s)	35
FspI	TGCGCA	1 cut(s)	28
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	3 cut(s)	283, 321, 422
HaeIII	GGCC	2 cut(s)	393, 421
HapII	CCGG	3 cut(s)	286, 418, 426
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	5 cut(s)	74, 172, 267, 327, 362
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	3 cut(s)	286, 418, 426
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188III	TCNNGA	2 cut(s)	305, 432
Hpy8I	GTNNAC	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	5 cut(s)	47, 205, 215, 323, 327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	1 cut(s)	164
Hsp92II	CATG	5 cut(s)	74, 172, 267, 327, 362
HspAI	GCGC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	8 cut(s)	41, 48, 101, 240, 267, 299, 365, 431
Lsp1109I	GCAGC	2 cut(s)	269, 307
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	179
MboII	GAAGA	2 cut(s)	27, 116
MhlI	GDGCHC	4 cut(s)	9, 86, 138, 395
MluCI	AATT	1 cut(s)	119
MnlI	CCTC	4 cut(s)	301, 359, 362, 380
MspI	CCGG	3 cut(s)	286, 418, 426
MspR9I	CCNGG	4 cut(s)	255, 287, 418, 426
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	3 cut(s)	287, 418, 426
NlaIII	CATG	5 cut(s)	74, 172, 267, 327, 362
NlaIV	GGNNCC	3 cut(s)	392, 393, 416
NmuCI	GTSAC	1 cut(s)	179
NsbI	TGCGCA	1 cut(s)	28
NspI	RCATGY	2 cut(s)	267, 327
PaeI	GCATGC	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	284, 322, 423
Psp124BI	GAGCTC	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	3 cut(s)	392, 393, 416
PspOMI	GGGCCC	1 cut(s)	391
PspPI	GGNCC	3 cut(s)	391, 392, 414
SacI	GAGCTC	1 cut(s)	138
SatI	GCNGC	3 cut(s)	283, 321, 422
Sau96I	GGNCC	3 cut(s)	391, 392, 414
ScrFI	CCNGG	4 cut(s)	255, 287, 418, 426
SduI	GDGCHC	4 cut(s)	9, 86, 138, 395
SetI	ASST	5 cut(s)	40, 138, 201, 304, 322
SfaNI	GCATC	1 cut(s)	202
SinI	GGWCC	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
SphI	GCATGC	1 cut(s)	327
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	3 cut(s)	152, 267, 422
SspMI	CTAG	1 cut(s)	35
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	4 cut(s)	253, 285, 416, 424
TaaI	ACNGT	1 cut(s)	92
TaqII	GACCGA	1 cut(s)	402
TasI	AATT	1 cut(s)	119
TauI	GCSGC	1 cut(s)	424
TfiI	GAWTC	1 cut(s)	59
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	2 cut(s)	282, 320
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	3 cut(s)	117, 185, 347
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	414
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	2 cut(s)	267, 327
XmiI	GTMKAC	1 cut(s)	67
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.