Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Forward (+)

30026957 .. 30034797

Gene Structure 7841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG276300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTATCTTGGAACTACATTGACAGGTGCGAGAGATACTTCTGTATGGCAAACAGATGAGCTTAGGCACCATAAACCCACACCAGGTGATGAAGCTAGGGCAGATGCAGGGCGTTTTACTGCTGCCTGGGAACTTTACAAAGCTCAAGAGGATGTTGTAGCTGCATGCAATGATTATGATATCAAAGTTACCCTGTTTCATGGGAGAGGAGGAAGTATTGGTCGTGGAGGGGGCCCTACATATCTTGCCATTCAGTCCCAGCCGCCTGGCTCTGTGATGGATCACCATCCTGAGGCACCGCCCACGCTTCCTCCACCGCCCACGCTTCCTCCACCGCCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

114

Amino Acids

12.22

Weight (kDa)

5.61

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	35 - 93	1.8e-26	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	66, 295
AciI	CCGC	4 cut(s)	263, 299, 317, 335
AclWI	GGATC	1 cut(s)	288
AdeI	CACNNNGTG	1 cut(s)	86
AfiI	CCNNNNNNNGG	2 cut(s)	83, 292
AjnI	CCWGG	3 cut(s)	82, 125, 265
AluBI	AGCT	4 cut(s)	61, 95, 143, 161
AluI	AGCT	4 cut(s)	61, 95, 143, 161
AlwI	GGATC	1 cut(s)	288
AoxI	GGCC	1 cut(s)	232
ApaI	GGGCCC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	122, 161
AspS9I	GGNCC	2 cut(s)	232, 233
AsuHPI	GGTGA	2 cut(s)	98, 275
AxyI	CCTNAGG	1 cut(s)	291
BaeGI	GKGCMC	1 cut(s)	236
BaeI	ACNNNNGTAYC	2 cut(s)	27, 60
BanI	GGYRCC	2 cut(s)	66, 295
BanII	GRGCYC	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	109, 148
BccI	CCATC	2 cut(s)	271, 294
BciT130I	CCWGG	3 cut(s)	84, 127, 267
BfaI	CTAG	1 cut(s)	96
BisI	GCNGC	3 cut(s)	123, 162, 263
BlsI	GCNGC	3 cut(s)	124, 163, 264
Bme1390I	CCNGG	3 cut(s)	84, 127, 267
BmgT120I	GGNCC	2 cut(s)	232, 233
BmiI	GGNNCC	4 cut(s)	68, 233, 234, 297
BmrFI	CCNGG	3 cut(s)	84, 127, 267
BmsI	GCATC	1 cut(s)	94
Bpu10I	CCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	126
BsaXI	ACNNNNNCTCC	4 cut(s)	295, 313, 325, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 292
Bse21I	CCTNAGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	175
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	3 cut(s)	84, 127, 267
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	2 cut(s)	157, 286
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	2 cut(s)	83, 292
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	109, 148
BseYI	CCCAGC	1 cut(s)	258
BshFI	GGCC	1 cut(s)	234
BshNI	GGYRCC	2 cut(s)	66, 295
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	2 cut(s)	83, 292
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	234
Bsp120I	GGGCCC	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	4 cut(s)	263, 299, 317, 335
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	4 cut(s)	68, 233, 234, 297
BspPI	GGATC	1 cut(s)	288
BspT107I	GGYRCC	2 cut(s)	66, 295
BsrDI	GCAATG	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	280
Bst2UI	CCWGG	3 cut(s)	84, 127, 267
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	2 cut(s)	62, 291
BstF5I	GGATG	2 cut(s)	157, 286
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstNI	CCWGG	3 cut(s)	84, 127, 267
BstNSI	RCATGY	1 cut(s)	168
BstSCI	CCNGG	3 cut(s)	82, 125, 265
BstSLI	GKGCMC	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	109, 148
BstXI	CCANNNNNNTGG	1 cut(s)	266
Bsu36I	CCTNAGG	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	157, 286
Cac8I	GCNNGC	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	232, 233
CsiI	ACCWGGT	1 cut(s)	82
CviAII	CATG	2 cut(s)	165, 200
CviJI	RGCY	7 cut(s)	61, 95, 143, 161, 234, 262, 270
CviKI_1	RGCY	7 cut(s)	61, 95, 143, 161, 234, 262, 270
DdeI	CTNAG	2 cut(s)	62, 291
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
DraIII	CACNNNGTG	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	236
Eco32I	GATATC	1 cut(s)	181
Eco81I	CCTNAGG	1 cut(s)	291
EcoO109I	RGGNCCY	2 cut(s)	232, 233
EcoRII	CCWGG	3 cut(s)	82, 125, 265
EcoRV	GATATC	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	236
FaeI	CATG	2 cut(s)	168, 203
FaiI	YATR	6 cut(s)	46, 72, 166, 177, 201, 241
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	2 cut(s)	164, 199
Fnu4HI	GCNGC	3 cut(s)	123, 162, 263
FokI	GGATG	2 cut(s)	164, 273
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	123, 162, 263
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	3 cut(s)	123, 162, 263
GsaI	CCCAGC	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	234
Hin1II	CATG	2 cut(s)	168, 203
HphI	GGTGA	2 cut(s)	98, 275
Hpy188III	TCNNGA	2 cut(s)	146, 290
HpyCH4V	TGCA	3 cut(s)	107, 164, 168
HpyF3I	CTNAG	2 cut(s)	62, 291
Hsp92II	CATG	2 cut(s)	168, 203
Kzo9I	GATC	1 cut(s)	280
Lsp1109I	GCAGC	2 cut(s)	109, 148
LweI	GCATC	1 cut(s)	94
MabI	ACCWGGT	1 cut(s)	82
MaeI	CTAG	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	236
MnlI	CCTC	7 cut(s)	142, 200, 203, 221, 286, 321, 339
MspR9I	CCNGG	3 cut(s)	84, 127, 267
MvaI	CCWGG	3 cut(s)	84, 127, 267
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	2 cut(s)	168, 203
NlaIV	GGNNCC	4 cut(s)	68, 233, 234, 297
NspI	RCATGY	1 cut(s)	168
PaeI	GCATGC	1 cut(s)	168
PkrI	GCNGC	3 cut(s)	124, 163, 264
Psp6I	CCWGG	3 cut(s)	82, 125, 265
PspFI	CCCAGC	1 cut(s)	258
PspGI	CCWGG	3 cut(s)	82, 125, 265
PspN4I	GGNNCC	4 cut(s)	68, 233, 234, 297
PspOMI	GGGCCC	1 cut(s)	232
PspPI	GGNCC	2 cut(s)	232, 233
SatI	GCNGC	3 cut(s)	123, 162, 263
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	2 cut(s)	232, 233
ScrFI	CCNGG	3 cut(s)	84, 127, 267
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	6 cut(s)	28, 63, 88, 97, 145, 163
SexAI	ACCWGGT	1 cut(s)	82
SfaNI	GCATC	1 cut(s)	94
SmlI	CTYRAG	1 cut(s)	144
SmoI	CTYRAG	1 cut(s)	144
SphI	GCATGC	1 cut(s)	168
SsiI	CCGC	4 cut(s)	263, 299, 317, 335
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	3 cut(s)	82, 125, 265
TauI	GCSGC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	122, 161
TspDTI	ATGAA	2 cut(s)	105, 188
XceI	RCATGY	1 cut(s)	168
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.