Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Forward (+)

68981151 .. 68982636

Gene Structure 1486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28096

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGCTGAATTCTGAAACACTTAATGCAATTACCAAATATTTGGATATGGGCACATACAGTGAGTGGGATGAAGAAAAGAAACTGGAATTTCTAACAAGAGAGCTCAAAGGAAAAAGACCGCTAGTCCCACCTAGCATGGAGGGTACTCTACGATCAACTGAGCAAGGAGAAATGGAACAGTCAAAATTTGGGCTGCCACAGATTTCACTCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

71

Amino Acids

8.21

Weight (kDa)

5.1

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	4 - 47	6.9e-09	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	119
AcsI	RAATTY	3 cut(s)	7, 86, 185
AfaI	GTAC	1 cut(s)	145
AhdI	GACNNNNNGTC	1 cut(s)	122
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw21I	GWGCWC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	193
ApoI	RAATTY	3 cut(s)	7, 86, 185
BaeGI	GKGCMC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	180
BfaI	CTAG	2 cut(s)	122, 132
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
BmeRI	GACNNNNNGTC	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	53, 105
Bsp143I	GATC	1 cut(s)	152
BspACI	CCGC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	152
Bst4CI	ACNGT	2 cut(s)	59, 180
BstDEI	CTNAG	2 cut(s)	159, 209
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	152
BstSLI	GKGCMC	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	2 cut(s)	103, 193
CviKI_1	RGCY	2 cut(s)	103, 193
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	2 cut(s)	159, 209
DpnI	GATC	1 cut(s)	154
DpnII	GATC	1 cut(s)	152
DriI	GACNNNNNGTC	1 cut(s)	122
Eam1105I	GACNNNNNGTC	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	7
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	1 cut(s)	139
FaiI	YATR	3 cut(s)	47, 55, 137
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	2 cut(s)	122, 132
GluI	GCNGC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	13, 212
HpyCH4III	ACNGT	2 cut(s)	59, 180
HpyCH4V	TGCA	1 cut(s)	26
HpyF3I	CTNAG	2 cut(s)	159, 209
Hsp92II	CATG	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	152
LpnPI	CCDG	1 cut(s)	68
Lsp1109I	GCAGC	1 cut(s)	180
MaeI	CTAG	2 cut(s)	122, 132
MalI	GATC	1 cut(s)	154
MboI	GATC	1 cut(s)	152
MboII	GAAGA	1 cut(s)	83
MhlI	GDGCHC	2 cut(s)	53, 105
MluCI	AATT	4 cut(s)	7, 27, 86, 185
MnlI	CCTC	1 cut(s)	133
MseI	TTAA	1 cut(s)	21
NdeII	GATC	1 cut(s)	152
NlaIII	CATG	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	105
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	1 cut(s)	152
SduI	GDGCHC	2 cut(s)	53, 105
SetI	ASST	2 cut(s)	105, 133
SgeI	CNNG	6 cut(s)	95, 108, 134, 144, 148, 176
Sse9I	AATT	4 cut(s)	7, 27, 86, 185
SsiI	CCGC	1 cut(s)	119
SspI	AATATT	1 cut(s)	38
SspMI	CTAG	2 cut(s)	122, 132
SstI	GAGCTC	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	59, 180
TasI	AATT	4 cut(s)	7, 27, 86, 185
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	64
XapI	RAATTY	3 cut(s)	7, 86, 185
XspI	CTAG	2 cut(s)	122, 132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.