Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Forward (+)

29262546 .. 29264258

Gene Structure 1713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37841

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGGCACATACAGTGAGTGGGATGAAGAAAAGAAACTGGAATTTCTAACAAGAGAGTTCAAAGGAAAAAGACCGCTAGTCCCATCTAGCATGGAGAGCTCTACTAGAATTGGACATCTTTGGGCAATTCCATGGGTGTTTGCATGGACTCGAACCAGATTTGTTCTTCCAGCTTGGGTGGAGTTGAACCAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

65

Amino Acids

7.77

Weight (kDa)

8.16

Isoelectric Point (pI)

29.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	28 - 60	4.8e-08	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	61, 187
AhdI	GACNNNNNGTC	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	2 cut(s)	99, 173
AluI	AGCT	2 cut(s)	99, 173
Alw21I	GWGCWC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	101
BccI	CCATC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	191
BfaI	CTAG	3 cut(s)	77, 87, 105
Bme1390I	CCNGG	1 cut(s)	191
BmeRI	GACNNNNNGTC	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	1 cut(s)	28
BseNI	ACTGG	1 cut(s)	42
BseSI	GKGCMC	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	8, 101
Bsp19I	CCATGG	1 cut(s)	131
BspACI	CCGC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstSLI	GKGCMC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	19
CsiI	ACCWGGT	1 cut(s)	189
CviAII	CATG	3 cut(s)	91, 132, 144
CviJI	RGCY	2 cut(s)	99, 173
CviKI_1	RGCY	2 cut(s)	99, 173
DriI	GACNNNNNGTC	1 cut(s)	77
Eam1105I	GACNNNNNGTC	1 cut(s)	77
Ecl136II	GAGCTC	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	3 cut(s)	94, 135, 147
FaiI	YATR	4 cut(s)	10, 92, 133, 145
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	3 cut(s)	90, 131, 143
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	101
FspBI	CTAG	3 cut(s)	77, 87, 105
Hin1II	CATG	3 cut(s)	94, 135, 147
HinfI	GANTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	94, 135, 147
LpnPI	CCDG	4 cut(s)	23, 169, 176, 183
MabI	ACCWGGT	1 cut(s)	189
MaeI	CTAG	3 cut(s)	77, 87, 105
MboII	GAAGA	2 cut(s)	38, 158
MhlI	GDGCHC	2 cut(s)	8, 101
MluCI	AATT	3 cut(s)	41, 108, 126
MlyI	GAGTC	1 cut(s)	142
MseI	TTAA	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	96
NcoI	CCATGG	1 cut(s)	131
NlaIII	CATG	3 cut(s)	94, 135, 147
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp124BI	GAGCTC	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
SacI	GAGCTC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	196
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	8, 101
SetI	ASST	3 cut(s)	101, 175, 195
SexAI	ACCWGGT	1 cut(s)	189
Sse9I	AATT	3 cut(s)	41, 108, 126
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	3 cut(s)	77, 87, 105
SstI	GAGCTC	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	14
TaqI	TCGA	1 cut(s)	151
TasI	AATT	3 cut(s)	41, 108, 126
Tru1I	TTAA	1 cut(s)	196
Tru9I	TTAA	1 cut(s)	196
TscAI	CASTG	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	1 cut(s)	41
XspI	CTAG	3 cut(s)	77, 87, 105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.