Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Reverse (-)

64027483 .. 64031174

Gene Structure 3692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00044970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGGCAGTTGGGCACATACGAGTGAGTGGGATGAAGAAAAGAAACTGGAATTTCTAACAAGAGAGCTCAAAGGAAAAAGACTGCTAATCCCACTTAGCATGAAGGCAAGTGACATCCTTGCTGTGGAGCTTTTGCAAAAAGATGCACGACTTGCCGTTAGTGGAGAGATAGGAAAGCCGTGTCCTGGTGGAACCTCAAGAGTGTTGGAGGTGAAAAATTCCGTAGAGGAGTTTGACCCAACAATTAATGCGGACGGGGCGAGAGCCGACACGGGAACAATCGAGAAGCTTCCTTCGAGCGTTGACTTGGAGTTTGACCGTCGGCTCGAAGAGAAGGGGGGTACCGCGAAAACCCTCCGATGCCTAAGTCGTTTCGCACTCCCGCACCCATGGTTTGCGTCAAGCACACCGATTCGAGAAAATCCGAAGAAAACTCCGGAGAGAGTTGAGGAGACGGTGCCATGGAAGCCGACGGATCGCAACATCAAAAAGTACATCGAGGAGTACTTCATACCGAAATACGTTAAGCTTTCACCTATCCCTGCGATCGCCGATATTCACACCGGTGAAAACGTGCTGTTGGTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

196

Amino Acids

22.02

Weight (kDa)

6.36

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	341
AccB1I	GGYRCC	3 cut(s)	341, 457, 583
AccII	CGCG	1 cut(s)	347
AccIII	TCCGGA	1 cut(s)	436
AciI	CCGC	3 cut(s)	251, 345, 383
AclWI	GGATC	1 cut(s)	483
AcsI	RAATTY	2 cut(s)	50, 217
AfaI	GTAC	3 cut(s)	343, 494, 506
AfiI	CCNNNNNNNGG	2 cut(s)	124, 185
AgeI	ACCGGT	1 cut(s)	563
AjnI	CCWGG	1 cut(s)	184
AleI	CACNNNNGTG	1 cut(s)	564
AluBI	AGCT	4 cut(s)	67, 130, 289, 529
AluI	AGCT	4 cut(s)	67, 130, 289, 529
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	1 cut(s)	483
Aor13HI	TCCGGA	1 cut(s)	436
ApoI	RAATTY	2 cut(s)	50, 217
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AseI	ATTAAT	1 cut(s)	246
AsiGI	ACCGGT	1 cut(s)	563
AsiSI	GCGATCGC	1 cut(s)	549
Asp718I	GGTACC	1 cut(s)	341
AsuHPI	GGTGA	3 cut(s)	223, 525, 578
BaeGI	GKGCMC	1 cut(s)	16
BanI	GGYRCC	3 cut(s)	341, 457, 583
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	69
BceAI	ACGGC	2 cut(s)	140, 163
BciT130I	CCWGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	446
BmcAI	AGTACT	1 cut(s)	506
Bme1390I	CCNGG	1 cut(s)	186
BmiI	GGNNCC	4 cut(s)	193, 343, 459, 585
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	2 cut(s)	133, 350
BpuEI	CTTGAG	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	389, 461
BsaWI	WCCGGW	2 cut(s)	436, 563
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 185
Bse118I	RCCGGY	1 cut(s)	563
Bse1I	ACTGG	1 cut(s)	51
BseAI	TCCGGA	1 cut(s)	436
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	389, 461
BseGI	GGATG	2 cut(s)	37, 114
BseLI	CCNNNNNNNGG	2 cut(s)	124, 185
BseNI	ACTGG	1 cut(s)	51
BseRI	GAGGAG	3 cut(s)	242, 464, 515
BseSI	GKGCMC	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	347
Bsh1285I	CGRYCG	1 cut(s)	549
BshNI	GGYRCC	3 cut(s)	341, 457, 583
BshTI	ACCGGT	1 cut(s)	563
BsiEI	CGRYCG	1 cut(s)	549
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	437, 564
BslI	CCNNNNNNNGG	2 cut(s)	124, 185
BsmAI	GTCTC	1 cut(s)	446
BsmBI	CGTCTC	1 cut(s)	446
Bsp1286I	GDGCHC	2 cut(s)	16, 69
Bsp13I	TCCGGA	1 cut(s)	436
Bsp143I	GATC	2 cut(s)	475, 546
Bsp19I	CCATGG	2 cut(s)	389, 461
BspACI	CCGC	3 cut(s)	251, 345, 383
BspEI	TCCGGA	1 cut(s)	436
BspFNI	CGCG	1 cut(s)	347
BspLI	GGNNCC	4 cut(s)	193, 343, 459, 585
BspPI	GGATC	1 cut(s)	483
BspT107I	GGYRCC	3 cut(s)	341, 457, 583
BsrFI	RCCGGY	1 cut(s)	563
BsrI	ACTGG	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	563
BssECI	CCNNGG	2 cut(s)	389, 461
BssMI	GATC	2 cut(s)	475, 546
BssT1I	CCWWGG	2 cut(s)	389, 461
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	320, 457
Bst6I	CTCTTC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	95, 365
BstDSI	CCRYGG	2 cut(s)	389, 461
BstF5I	GGATG	2 cut(s)	37, 114
BstFNI	CGCG	1 cut(s)	347
BstKTI	GATC	2 cut(s)	478, 549
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	2 cut(s)	475, 546
BstMCI	CGRYCG	1 cut(s)	549
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 257, 466, 583
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstSLI	GKGCMC	1 cut(s)	16
BstUI	CGCG	1 cut(s)	347
BtgI	CCRYGG	2 cut(s)	389, 461
BtsCI	GGATG	2 cut(s)	37, 114
Cfr10I	RCCGGY	1 cut(s)	563
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	3 cut(s)	342, 493, 505
CspAI	ACCGGT	1 cut(s)	563
CviAII	CATG	3 cut(s)	100, 390, 462
CviJI	RGCY	8 cut(s)	67, 130, 178, 266, 289, 325, 469, 529
CviKI_1	RGCY	8 cut(s)	67, 130, 178, 266, 289, 325, 469, 529
CviQI	GTAC	3 cut(s)	342, 493, 505
DdeI	CTNAG	2 cut(s)	95, 365
DpnI	GATC	2 cut(s)	477, 548
DpnII	GATC	2 cut(s)	475, 546
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	2 cut(s)	389, 461
Eco24I	GRGCYC	1 cut(s)	69
Eco53kI	GAGCTC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	2 cut(s)	389, 461
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	2 cut(s)	389, 461
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	3 cut(s)	103, 393, 465
FaiI	YATR	5 cut(s)	18, 101, 391, 463, 512
FatI	CATG	3 cut(s)	99, 389, 461
FauI	CCCGC	1 cut(s)	390
FokI	GGATG	2 cut(s)	44, 101
FriOI	GRGCYC	1 cut(s)	69
HapII	CCGG	2 cut(s)	437, 564
HgaI	GACGC	1 cut(s)	387
Hin1II	CATG	3 cut(s)	103, 393, 465
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	2 cut(s)	287, 527
HinfI	GANTC	1 cut(s)	412
HpaII	CCGG	2 cut(s)	437, 564
HphI	GGTGA	3 cut(s)	223, 525, 578
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	359, 426
Hpy188III	TCNNGA	4 cut(s)	198, 283, 416, 437
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	2 cut(s)	324, 475
HpyAV	CCTTC	3 cut(s)	97, 303, 328
HpyCH4III	ACNGT	2 cut(s)	320, 457
HpyCH4IV	ACGT	2 cut(s)	522, 573
HpyCH4V	TGCA	2 cut(s)	136, 146
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 257, 466, 583
HpyF3I	CTNAG	2 cut(s)	95, 365
HpySE526I	ACGT	2 cut(s)	522, 573
Hsp92II	CATG	3 cut(s)	103, 393, 465
Kpn2I	TCCGGA	1 cut(s)	436
KpnI	GGTACC	1 cut(s)	345
Kzo9I	GATC	2 cut(s)	475, 546
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	6 cut(s)	32, 171, 198, 450, 555, 577
LweI	GCATC	2 cut(s)	133, 350
MaeII	ACGT	2 cut(s)	522, 573
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	2 cut(s)	477, 548
MboI	GATC	2 cut(s)	475, 546
MboII	GAAGA	3 cut(s)	47, 341, 439
MhlI	GDGCHC	2 cut(s)	16, 69
MluCI	AATT	3 cut(s)	50, 217, 243
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	6 cut(s)	202, 205, 220, 365, 442, 493
MroI	TCCGGA	1 cut(s)	436
MseI	TTAA	2 cut(s)	246, 525
MslI	CAYNNNNRTG	2 cut(s)	21, 564
MspI	CCGG	2 cut(s)	437, 564
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	4 cut(s)	152, 257, 466, 583
NcoI	CCATGG	2 cut(s)	389, 461
NdeII	GATC	2 cut(s)	475, 546
NlaIII	CATG	3 cut(s)	103, 393, 465
NlaIV	GGNNCC	4 cut(s)	193, 343, 459, 585
NmuCI	GTSAC	1 cut(s)	110
OliI	CACNNNNGTG	1 cut(s)	564
PfeI	GAWTC	1 cut(s)	412
PinAI	ACCGGT	1 cut(s)	563
Ple19I	CGATCG	1 cut(s)	549
PshBI	ATTAAT	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	4 cut(s)	193, 343, 459, 585
PvuI	CGATCG	1 cut(s)	549
RgaI	GCGATCGC	1 cut(s)	549
RsaI	GTAC	3 cut(s)	343, 494, 506
RsaNI	GTAC	3 cut(s)	342, 493, 505
RseI	CAYNNNNRTG	2 cut(s)	21, 564
SacI	GAGCTC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	246, 525
Sau3AI	GATC	2 cut(s)	475, 546
ScaI	AGTACT	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	2 cut(s)	16, 69
SetI	ASST	9 cut(s)	69, 132, 197, 213, 291, 525, 531, 538, 576
SfaAI	GCGATCGC	1 cut(s)	549
SfaNI	GCATC	2 cut(s)	133, 350
SgfI	GCGATCGC	1 cut(s)	549
SgrAI	CRCCGGYG	1 cut(s)	563
SmiMI	CAYNNNNRTG	2 cut(s)	21, 564
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	3 cut(s)	50, 217, 243
SsiI	CCGC	3 cut(s)	251, 345, 383
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	2 cut(s)	389, 461
TaaI	ACNGT	2 cut(s)	320, 457
TaiI	ACGT	2 cut(s)	525, 576
TaqI	TCGA	5 cut(s)	282, 296, 327, 415, 498
TasI	AATT	3 cut(s)	50, 217, 243
TatI	WGTACW	2 cut(s)	492, 504
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	2 cut(s)	246, 525
Tru9I	TTAA	2 cut(s)	246, 525
TseFI	GTSAC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	48, 116, 499
TspGWI	ACGGA	2 cut(s)	211, 488
VspI	ATTAAT	1 cut(s)	246
XapI	RAATTY	2 cut(s)	50, 217
ZrmI	AGTACT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.