Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Forward (+)

57104750 .. 57107804

Gene Structure 3055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG349400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCAAGGTCTCCATCCCAGAACTCTCTTCGTAATGCTAGTCTCATTGCCAAGAGGAAAATGTTTGCTGAGTCCCAGGTTGGAAGGTCCAGTTTCCAGAAGCTTTTGGAGCCAAAGCCCACTAAGAGATCTGCAATTGCTCCTTATAGAATTGTTCTTGGTAATATAAAAGACAAGGTTGCTTCTGATGTTAAAGAAGTACTGGATACCTTCCGCATTGCTGCTGAGCTAGGGAGTGATTCGCTTGGAGCATATGTGATTTCTATGGCTTCTAACGCAAGTGATGTCCTTGCTGTGGAGCTTTTGCAAAAAGATGCACGACTTGCCGTTAGTGGAGAAATAGGAAAGCCATGTCCTGGTGGAACGCTGCGTGTGGTTCCTTTGTTTGAAACTGTGAAGGACTTGAGAGGAGCTGGCTCAGTGATCAGGAAATTATTGTCCATTGATTGGTACAGGGAGCACATCATCAAGAACCATAATGGGCATCAAGAGGTGATGGTTGGATACTCTGATTCTGGAAAAGATGCAGGGCGTTTTACTGCTGCATGGGAACTTTACAAAGCTCAAGAGGATGTTGTAGCTGCATGCAATGAGTATGATATCAAAGTTACCCTGTTTCATGGGAGAGGAGGAAGTATTGGTCGTGGAGGGGGCCCTACATATCTGGCCATTCAATCCCAGCCGCCTGGCTCTGTGATGGTAAACTTTTTGTTTTGCACTCACCAATCTGCTTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

246

Amino Acids

26.61

Weight (kDa)

9.32

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	59 - 233	2.6e-69	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	356, 447
AciI	CCGC	2 cut(s)	214, 683
AcoI	YGGCCR	1 cut(s)	666
AfaI	GTAC	2 cut(s)	201, 452
AfiI	CCNNNNNNNGG	3 cut(s)	295, 356, 447
AgsI	TTSAA	2 cut(s)	389, 674
AjnI	CCWGG	3 cut(s)	75, 355, 685
AluBI	AGCT	6 cut(s)	103, 229, 301, 413, 563, 581
AluI	AGCT	6 cut(s)	103, 229, 301, 413, 563, 581
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	2 cut(s)	15, 47
AoxI	GGCC	2 cut(s)	652, 666
ApaI	GGGCCC	1 cut(s)	656
ApeKI	GCWGC	4 cut(s)	221, 367, 542, 581
AspS9I	GGNCC	3 cut(s)	87, 652, 653
AsuHPI	GGTGA	2 cut(s)	505, 713
AvaII	GGWCC	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	656
BalI	TGGCCA	1 cut(s)	668
BanII	GRGCYC	1 cut(s)	656
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	4 cut(s)	208, 354, 529, 568
BccI	CCATC	3 cut(s)	22, 490, 691
BceAI	ACGGC	1 cut(s)	311
BciT130I	CCWGG	3 cut(s)	77, 357, 687
BciVI	GTATCC	2 cut(s)	199, 497
BclI	TGATCA	1 cut(s)	423
BcoDI	GTCTC	2 cut(s)	15, 47
BfaI	CTAG	2 cut(s)	39, 230
BfuI	GTATCC	2 cut(s)	199, 497
BglII	AGATCT	1 cut(s)	128
BisI	GCNGC	5 cut(s)	222, 368, 543, 582, 683
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	5 cut(s)	223, 369, 544, 583, 684
BmcAI	AGTACT	1 cut(s)	201
Bme1390I	CCNGG	3 cut(s)	77, 357, 687
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	3 cut(s)	87, 652, 653
BmiI	GGNNCC	4 cut(s)	111, 378, 653, 654
BmrFI	CCNGG	3 cut(s)	77, 357, 687
BmsI	GCATC	3 cut(s)	304, 493, 514
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	424, 549
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	3 cut(s)	295, 356, 447
Bse1I	ACTGG	2 cut(s)	90, 207
Bse3DI	GCAATG	3 cut(s)	45, 216, 595
BseBI	CCWGG	3 cut(s)	77, 357, 687
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	2 cut(s)	14, 577
BseLI	CCNNNNNNNGG	3 cut(s)	295, 356, 447
BseMI	GCAATG	3 cut(s)	45, 216, 595
BseMII	CTCAG	3 cut(s)	60, 216, 432
BseNI	ACTGG	2 cut(s)	90, 207
BseRI	GAGGAG	2 cut(s)	423, 642
BseSI	GKGCMC	1 cut(s)	656
BseXI	GCAGC	4 cut(s)	208, 354, 529, 568
BseYI	CCCAGC	1 cut(s)	678
BshFI	GGCC	2 cut(s)	654, 668
BsiHKAI	GWGCWC	1 cut(s)	462
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	3 cut(s)	295, 356, 447
BsmAI	GTCTC	2 cut(s)	15, 47
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	654, 668
Bso31I	GGTCTC	1 cut(s)	15
Bsp120I	GGGCCC	1 cut(s)	652
Bsp1286I	GDGCHC	2 cut(s)	462, 656
Bsp143I	GATC	2 cut(s)	128, 423
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	2 cut(s)	214, 683
BspANI	GGCC	2 cut(s)	654, 668
BspCNI	CTCAG	3 cut(s)	61, 217, 431
BspLI	GGNNCC	4 cut(s)	111, 378, 653, 654
BspTNI	GGTCTC	1 cut(s)	15
BsrDI	GCAATG	3 cut(s)	45, 216, 595
BsrI	ACTGG	2 cut(s)	90, 207
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	2 cut(s)	128, 423
Bst2UI	CCWGG	3 cut(s)	77, 357, 687
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	415, 586
BstDEI	CTNAG	4 cut(s)	69, 123, 225, 418
BstF5I	GGATG	2 cut(s)	14, 577
BstKTI	GATC	2 cut(s)	131, 426
BstMAI	GTCTC	2 cut(s)	15, 47
BstMBI	GATC	2 cut(s)	128, 423
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 275, 323
BstNI	CCWGG	3 cut(s)	77, 357, 687
BstNSI	RCATGY	1 cut(s)	588
BstSCI	CCNGG	3 cut(s)	75, 355, 685
BstSLI	GKGCMC	1 cut(s)	656
BstV1I	GCAGC	4 cut(s)	208, 354, 529, 568
BstX2I	RGATCY	1 cut(s)	128
BstXI	CCANNNNNNTGG	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	128
BsuI	GTATCC	2 cut(s)	199, 497
BsuRI	GGCC	2 cut(s)	654, 668
BtsCI	GGATG	2 cut(s)	14, 577
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	415, 586
Cfr13I	GGNCC	3 cut(s)	87, 652, 653
Csp6I	GTAC	2 cut(s)	200, 451
CviAII	CATG	4 cut(s)	351, 546, 585, 620
CviQI	GTAC	2 cut(s)	200, 451
DdeI	CTNAG	4 cut(s)	69, 123, 225, 418
DpnI	GATC	2 cut(s)	130, 425
DpnII	GATC	2 cut(s)	128, 423
EaeI	YGGCCR	1 cut(s)	666
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	656
Eco31I	GGTCTC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	601
Eco47I	GGWCC	1 cut(s)	87
EcoO109I	RGGNCCY	2 cut(s)	652, 653
EcoRII	CCWGG	3 cut(s)	75, 355, 685
EcoRV	GATATC	1 cut(s)	601
EcoT38I	GRGCYC	1 cut(s)	656
FaeI	CATG	4 cut(s)	354, 549, 588, 623
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	4 cut(s)	350, 545, 584, 619
FauNDI	CATATG	1 cut(s)	253
FbaI	TGATCA	1 cut(s)	423
Fnu4HI	GCNGC	5 cut(s)	222, 368, 543, 582, 683
FokI	GGATG	1 cut(s)	584
FriOI	GRGCYC	1 cut(s)	656
Fsp4HI	GCNGC	5 cut(s)	222, 368, 543, 582, 683
FspBI	CTAG	2 cut(s)	39, 230
GluI	GCNGC	5 cut(s)	222, 368, 543, 582, 683
GsaI	CCCAGC	1 cut(s)	682
HaeIII	GGCC	2 cut(s)	654, 668
Hin1II	CATG	4 cut(s)	354, 549, 588, 623
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	3 cut(s)	71, 239, 512
HphI	GGTGA	2 cut(s)	505, 713
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	2 cut(s)	187, 511
Hpy188III	TCNNGA	6 cut(s)	97, 427, 469, 488, 516, 566
Hpy8I	GTNNAC	1 cut(s)	703
HpyAV	CCTTC	3 cut(s)	78, 220, 391
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4V	TGCA	8 cut(s)	134, 307, 317, 527, 545, 584, 588, 717
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 275, 323
HpyF3I	CTNAG	4 cut(s)	69, 123, 225, 418
Hsp92II	CATG	4 cut(s)	354, 549, 588, 623
Ksp22I	TGATCA	1 cut(s)	423
Kzo9I	GATC	2 cut(s)	128, 423
LmnI	GCTCC	6 cut(s)	109, 145, 248, 298, 410, 457
Lsp1109I	GCAGC	4 cut(s)	208, 354, 529, 568
LweI	GCATC	3 cut(s)	304, 493, 514
MaeI	CTAG	2 cut(s)	39, 230
MaeIII	GTNAC	1 cut(s)	607
MalI	GATC	2 cut(s)	130, 425
MboI	GATC	2 cut(s)	128, 423
MboII	GAAGA	1 cut(s)	20
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	2 cut(s)	462, 656
MlsI	TGGCCA	1 cut(s)	668
MluCI	AATT	3 cut(s)	135, 150, 431
MluNI	TGGCCA	1 cut(s)	668
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	2 cut(s)	61, 481
MnlI	CCTC	7 cut(s)	48, 401, 484, 562, 620, 623, 641
Mox20I	TGGCCA	1 cut(s)	668
MscI	TGGCCA	1 cut(s)	668
MseI	TTAA	2 cut(s)	192, 739
Msp20I	TGGCCA	1 cut(s)	668
MspR9I	CCNGG	3 cut(s)	77, 357, 687
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	3 cut(s)	77, 357, 687
MwoI	GCNNNNNNNGC	3 cut(s)	109, 275, 323
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	2 cut(s)	128, 423
NlaIII	CATG	4 cut(s)	354, 549, 588, 623
NlaIV	GGNNCC	4 cut(s)	111, 378, 653, 654
NspI	RCATGY	1 cut(s)	588
PaeI	GCATGC	1 cut(s)	588
PfeI	GAWTC	2 cut(s)	239, 512
PflMI	CCANNNNNTGG	2 cut(s)	356, 447
PkrI	GCNGC	5 cut(s)	223, 369, 544, 583, 684
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Psp6I	CCWGG	3 cut(s)	75, 355, 685
PspFI	CCCAGC	1 cut(s)	678
PspGI	CCWGG	3 cut(s)	75, 355, 685
PspN4I	GGNNCC	4 cut(s)	111, 378, 653, 654
PspOMI	GGGCCC	1 cut(s)	652
PspPI	GGNCC	3 cut(s)	87, 652, 653
PsuI	RGATCY	1 cut(s)	128
RsaI	GTAC	2 cut(s)	201, 452
RsaNI	GTAC	2 cut(s)	200, 451
SaqAI	TTAA	2 cut(s)	192, 739
SatI	GCNGC	5 cut(s)	222, 368, 543, 582, 683
Sau3AI	GATC	2 cut(s)	128, 423
Sau96I	GGNCC	3 cut(s)	87, 652, 653
ScaI	AGTACT	1 cut(s)	201
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	3 cut(s)	77, 357, 687
SduI	GDGCHC	2 cut(s)	462, 656
SfaNI	GCATC	3 cut(s)	304, 493, 514
SinI	GGWCC	1 cut(s)	87
SmlI	CTYRAG	2 cut(s)	403, 564
SmoI	CTYRAG	2 cut(s)	403, 564
SphI	GCATGC	1 cut(s)	588
Sse9I	AATT	3 cut(s)	135, 150, 431
SsiI	CCGC	2 cut(s)	214, 683
SspMI	CTAG	2 cut(s)	39, 230
StyD4I	CCNGG	3 cut(s)	75, 355, 685
TaaI	ACNGT	1 cut(s)	394
TasI	AATT	3 cut(s)	135, 150, 431
TatI	WGTACW	1 cut(s)	199
TauI	GCSGC	1 cut(s)	685
TfiI	GAWTC	2 cut(s)	239, 512
Tru1I	TTAA	2 cut(s)	192, 739
Tru9I	TTAA	2 cut(s)	192, 739
TscAI	CASTG	1 cut(s)	426
TseI	GCWGC	4 cut(s)	221, 367, 542, 581
TspDTI	ATGAA	2 cut(s)	608, 723
TspRI	CASTG	1 cut(s)	426
Van91I	CCANNNNNTGG	2 cut(s)	356, 447
VpaK11BI	GGWCC	1 cut(s)	87
XceI	RCATGY	1 cut(s)	588
XspI	CTAG	2 cut(s)	39, 230
ZrmI	AGTACT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.