Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Reverse (-)

46609992 .. 46611872

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0292500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAATTCGCAAAGACATGGCTTTTTCCCGGACGAAGTCGTCCTTCAAATTCTTTCAAGGCTGCCGGTTAAGTCACTTTTCAGGAGCAAAACTGTGTGTAAACTTTGGTATAGATTGGTTTCTGATAGGTATTTCATTCAGCTGTACAATGAATTGGCTGTGAAGAACTCTATGTTATTGGTTGAGGTCTCCGAGTCGTCTGGGTTGAAATCGAGTTTGATTTGTGTTGATGATCAGAAGGGTGTTTGTGAATTTGACTTGGATTTCTTGAAGGACAGGGTTAAGGTCAGGGCATCGTGTAATGGTTTGTTGTGTTGCTCTAGTATACCTGATAAGGGTGTTTACTATGTGTGTAACCCTATGACTCGGGAGTTTAAGCTGCTTCCGAAGAGTAGGGAGAGGAATGTGACTCGGTTTTACCCTGATGGTGAGGCCACTCTAGTCGGATTGGCTTGCAATTTGGCTTCTCAGAAGTTTAATGTGGTTTTAGCTGGCTATCACCGCACTTTTGGTCATAGGCCGGATGGGACTTTTAAGTGTATGATATATGATTCTGAGACGAACAAATGGAGGAAGTTTGTTACTTTCCAGGATGATCAGTTTAGCCATATGAATAAGAACCAGGTTGTGTTTGTGAATGGTGCGCTGCATTGGTTGACGGGTGGTGGTTGTTCTTGTGTCCTTGTGCTTGATTTGGAGTATGATATGTGGAGGAAGATGTCATTGCCTGATGAATTGAACTGTGGAATGGGGAATCGGTTTTACTTGTTGGAGTCGGATGGATGCTTGTCTGTGATACAGATTTCGGATACTTGGATGAAGATTTGGGTTTTGAAAGATTATGTGAGAGAGGAGTGGCGTTTGGTTGATACTGTGAGTCTGAGATGTATTAAAGGACTTGTTCCAGGGATTTTCCCCATATGTCAGACTGGTGAATATGTTCTGTTAGCAACACATAAGCAGATATTGGTGTTTCATCGCAAAAGTCGTGTGTGGAAAGAGATGTACTCGGTGAAGAACAGCTCTACACTCCCATTGTGGTACTCAGCTCATGCATTTCGGAGCACGATTTCTTCTTGCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

361

Amino Acids

41.68

Weight (kDa)

8.84

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	10 - 44	1.2e-09	F-box-like
F-box	PF00646	10 - 45	3.4e-09	F-box domain
FBA_3	PF08268	82 - 316	5.8e-12	F-box associated beta propeller domain
FBA_1	PF07734	91 - 337	3e-15	F-box associated beta propeller domain
Beta-prop_KIB1-4	PF03478	92 - 291	1.7e-06	KIB1-4 beta-propeller
b-prop_At3g26010-like	PF24750	94 - 302	3.8e-13	F-box protein At3g26010-like, beta-propeller
Beta-prop_AT5G49610-like	PF23635	96 - 341	1.5e-08	F-box protein AT5G49610-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	325
AciI	CCGC	1 cut(s)	502
AcsI	RAATTY	3 cut(s)	4, 48, 251
AfaI	GTAC	3 cut(s)	146, 1007, 1043
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	6 cut(s)	47, 57, 208, 271, 739, 835
AjnI	CCWGG	3 cut(s)	588, 621, 904
AluBI	AGCT	5 cut(s)	142, 379, 491, 1023, 1049
AluI	AGCT	5 cut(s)	142, 379, 491, 1023, 1049
Alw21I	GWGCWC	1 cut(s)	1067
Alw26I	GTCTC	2 cut(s)	193, 551
Ama87I	CYCGRG	1 cut(s)	366
AoxI	GGCC	2 cut(s)	432, 518
ApeKI	GCWGC	3 cut(s)	61, 379, 646
ApoI	RAATTY	3 cut(s)	4, 48, 251
Asp700I	GAANNNNTTC	1 cut(s)	939
AspLEI	GCGC	1 cut(s)	646
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	4 cut(s)	440, 491, 944, 1024
AvaI	CYCGRG	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	1067
BbvI	GCAGC	3 cut(s)	48, 366, 633
BccI	CCATC	3 cut(s)	419, 518, 773
BciT130I	CCWGG	3 cut(s)	590, 623, 906
BciVI	GTATCC	1 cut(s)	802
BclI	TGATCA	2 cut(s)	232, 595
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	193, 551
BfaI	CTAG	2 cut(s)	321, 440
BfuI	GTATCC	1 cut(s)	802
BisI	GCNGC	3 cut(s)	62, 380, 647
BlsI	GCNGC	3 cut(s)	63, 381, 648
Bme1390I	CCNGG	4 cut(s)	29, 590, 623, 906
BmeT110I	CYCGRG	1 cut(s)	366
BmrFI	CCNGG	4 cut(s)	29, 590, 623, 906
BmsI	GCATC	2 cut(s)	302, 773
BplI	GAGNNNNNCTC	2 cut(s)	992, 1024
BpuMI	CCSGG	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	905
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	934
Bse3DI	GCAATG	1 cut(s)	722
BseBI	CCWGG	3 cut(s)	590, 623, 906
BseDI	CCNNGG	1 cut(s)	905
BseGI	GGATG	5 cut(s)	529, 598, 784, 788, 822
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMI	GCAATG	1 cut(s)	722
BseMII	CTCAG	4 cut(s)	482, 546, 872, 1059
BseNI	ACTGG	1 cut(s)	934
BseRI	GAGGAG	1 cut(s)	866
BseXI	GCAGC	3 cut(s)	48, 366, 633
BshFI	GGCC	2 cut(s)	434, 520
BsiHKAI	GWGCWC	1 cut(s)	1067
BsiHKCI	CYCGRG	1 cut(s)	366
BsiSI	CCGG	3 cut(s)	29, 65, 521
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	2 cut(s)	193, 551
BsmBI	CGTCTC	1 cut(s)	551
BsmFI	GGGAC	1 cut(s)	541
BsnI	GGCC	2 cut(s)	434, 520
Bso31I	GGTCTC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	1067
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	232, 595
BspACI	CCGC	1 cut(s)	502
BspANI	GGCC	2 cut(s)	434, 520
BspCNI	CTCAG	4 cut(s)	481, 547, 873, 1058
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	722
BsrFI	RCCGGY	1 cut(s)	64
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	934
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	905
BssMI	GATC	2 cut(s)	232, 595
BssNAI	GTATAC	1 cut(s)	326
Bst1107I	GTATAC	1 cut(s)	326
Bst2UI	CCWGG	3 cut(s)	590, 623, 906
Bst4CI	ACNGT	3 cut(s)	94, 743, 874
Bst6I	CTCTTC	1 cut(s)	383
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	454, 493
BstDEI	CTNAG	4 cut(s)	468, 555, 881, 1045
BstF5I	GGATG	5 cut(s)	529, 598, 784, 788, 822
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	2 cut(s)	235, 598
BstMAI	GTCTC	2 cut(s)	193, 551
BstMBI	GATC	2 cut(s)	232, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	501
BstNI	CCWGG	3 cut(s)	590, 623, 906
BstSCI	CCNGG	4 cut(s)	27, 588, 621, 904
BstV1I	GCAGC	3 cut(s)	48, 366, 633
BstZ17I	GTATAC	1 cut(s)	326
BsuI	GTATCC	1 cut(s)	802
BsuRI	GGCC	2 cut(s)	434, 520
BtgZI	GCGATG	1 cut(s)	962
BtsCI	GGATG	5 cut(s)	529, 598, 784, 788, 822
Cac8I	GCNNGC	2 cut(s)	454, 493
CfoI	GCGC	1 cut(s)	646
Cfr10I	RCCGGY	1 cut(s)	64
CsiI	ACCWGGT	1 cut(s)	621
Csp6I	GTAC	3 cut(s)	145, 1006, 1042
CviAII	CATG	2 cut(s)	17, 1052
CviQI	GTAC	3 cut(s)	145, 1006, 1042
DdeI	CTNAG	4 cut(s)	468, 555, 881, 1045
DpnI	GATC	2 cut(s)	234, 597
DpnII	GATC	2 cut(s)	232, 595
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Eco31I	GGTCTC	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	366
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	3 cut(s)	588, 621, 904
EcoT22I	ATGCAT	1 cut(s)	1057
Esp3I	CGTCTC	1 cut(s)	551
FaeI	CATG	2 cut(s)	20, 1055
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	2 cut(s)	16, 1051
FauNDI	CATATG	2 cut(s)	609, 920
FbaI	TGATCA	2 cut(s)	232, 595
FblI	GTMKAC	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	62, 380, 647
FokI	GGATG	5 cut(s)	536, 605, 791, 795, 829
Fsp4HI	GCNGC	3 cut(s)	62, 380, 647
FspBI	CTAG	2 cut(s)	321, 440
GlaI	GCGC	1 cut(s)	645
GluI	GCNGC	3 cut(s)	62, 380, 647
HaeIII	GGCC	2 cut(s)	434, 520
HapII	CCGG	3 cut(s)	29, 65, 521
HhaI	GCGC	1 cut(s)	646
Hin1II	CATG	2 cut(s)	20, 1055
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HincII	GTYRAC	1 cut(s)	657
HindII	GTYRAC	1 cut(s)	657
HinfI	GANTC	7 cut(s)	194, 364, 409, 551, 754, 773, 877
HpaII	CCGG	3 cut(s)	29, 65, 521
HphI	GGTGA	4 cut(s)	440, 491, 944, 1024
Hpy166II	GTNNAC	4 cut(s)	101, 326, 343, 657
Hpy188III	TCNNGA	3 cut(s)	82, 268, 368
Hpy8I	GTNNAC	4 cut(s)	101, 326, 343, 657
HpyAV	CCTTC	3 cut(s)	53, 232, 265
HpyCH4III	ACNGT	3 cut(s)	94, 743, 874
HpyCH4V	TGCA	3 cut(s)	456, 649, 1055
HpyF10VI	GCNNNNNNNGC	1 cut(s)	501
HpyF3I	CTNAG	4 cut(s)	468, 555, 881, 1045
Hsp92II	CATG	2 cut(s)	20, 1055
HspAI	GCGC	1 cut(s)	644
Ksp22I	TGATCA	2 cut(s)	232, 595
Kzo9I	GATC	2 cut(s)	232, 595
LmnI	GCTCC	2 cut(s)	84, 1062
Lsp1109I	GCAGC	3 cut(s)	48, 366, 633
LweI	GCATC	2 cut(s)	302, 773
MabI	ACCWGGT	1 cut(s)	621
MaeI	CTAG	2 cut(s)	321, 440
MaeIII	GTNAC	4 cut(s)	72, 353, 406, 580
MalI	GATC	2 cut(s)	234, 597
MboI	GATC	2 cut(s)	232, 595
MboII	GAAGA	6 cut(s)	175, 400, 727, 832, 1027, 1065
MhlI	GDGCHC	1 cut(s)	1067
MluCI	AATT	6 cut(s)	4, 48, 152, 251, 457, 734
MlyI	GAGTC	5 cut(s)	203, 358, 403, 782, 886
MmeI	TCCRAC	3 cut(s)	424, 750, 756
MnlI	CCTC	6 cut(s)	178, 393, 424, 564, 705, 844
Mph1103I	ATGCAT	1 cut(s)	1057
MroXI	GAANNNNTTC	1 cut(s)	939
MseI	TTAA	7 cut(s)	69, 282, 375, 477, 534, 891, 1084
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	3 cut(s)	29, 65, 521
MspR9I	CCNGG	4 cut(s)	29, 590, 623, 906
MvaI	CCWGG	3 cut(s)	590, 623, 906
MwoI	GCNNNNNNNGC	1 cut(s)	501
NciI	CCSGG	1 cut(s)	29
NdeI	CATATG	2 cut(s)	609, 920
NdeII	GATC	2 cut(s)	232, 595
NlaIII	CATG	2 cut(s)	20, 1055
NmuCI	GTSAC	2 cut(s)	72, 406
NsiI	ATGCAT	1 cut(s)	1057
PcsI	WCGNNNNNNNCGW	1 cut(s)	985
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	2 cut(s)	551, 754
PflFI	GACNNNGTC	1 cut(s)	35
PfoI	TCCNGGA	2 cut(s)	27, 588
PkrI	GCNGC	3 cut(s)	63, 381, 648
PleI	GAGTC	5 cut(s)	202, 358, 403, 781, 885
PpsI	GAGTC	5 cut(s)	202, 358, 403, 781, 885
Psp6I	CCWGG	3 cut(s)	588, 621, 904
PspGI	CCWGG	3 cut(s)	588, 621, 904
PsyI	GACNNNGTC	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	3 cut(s)	146, 1007, 1043
RsaNI	GTAC	3 cut(s)	145, 1006, 1042
SaqAI	TTAA	7 cut(s)	69, 282, 375, 477, 534, 891, 1084
SatI	GCNGC	3 cut(s)	62, 380, 647
Sau3AI	GATC	2 cut(s)	232, 595
SchI	GAGTC	5 cut(s)	203, 358, 403, 782, 886
ScrFI	CCNGG	4 cut(s)	29, 590, 623, 906
SduI	GDGCHC	1 cut(s)	1067
SexAI	ACCWGGT	1 cut(s)	621
SfaNI	GCATC	2 cut(s)	302, 773
Sse9I	AATT	6 cut(s)	4, 48, 152, 251, 457, 734
SsiI	CCGC	1 cut(s)	502
SspMI	CTAG	2 cut(s)	321, 440
StyD4I	CCNGG	4 cut(s)	27, 588, 621, 904
TaaI	ACNGT	3 cut(s)	94, 743, 874
TaqI	TCGA	1 cut(s)	212
TasI	AATT	6 cut(s)	4, 48, 152, 251, 457, 734
TatI	WGTACW	2 cut(s)	144, 1005
TfiI	GAWTC	2 cut(s)	551, 754
Tru1I	TTAA	7 cut(s)	69, 282, 375, 477, 534, 891, 1084
Tru9I	TTAA	7 cut(s)	69, 282, 375, 477, 534, 891, 1084
TseFI	GTSAC	2 cut(s)	72, 406
TseI	GCWGC	3 cut(s)	61, 379, 646
Tsp45I	GTSAC	2 cut(s)	72, 406
TspDTI	ATGAA	7 cut(s)	17, 124, 165, 626, 747, 833, 965
Tth111I	GACNNNGTC	1 cut(s)	35
XapI	RAATTY	3 cut(s)	4, 48, 251
XmiI	GTMKAC	1 cut(s)	325
XmnI	GAANNNNTTC	1 cut(s)	939
XspI	CTAG	2 cut(s)	321, 440
Zsp2I	ATGCAT	1 cut(s)	1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.