Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Reverse (-)

19666844 .. 19668502

Gene Structure 1659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG126500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCAATCTGCATCTGAGGATCACCAGAGTTGGGATCATCAGTGTTATAATAGGAATCAAGAATCAGGTAGACATGCTGAAATACTTGATGCAATTACCAAATATTTGGATATGGGCACATACAGTGAGTGGGATGAAGAAAAGAAACTGGAATTTCTAACAAGAGAGCTCAAAGGAAAAGGACCACTAGTCCCACCTAGCATGGAGGGTACTCTACGATCAATTGAGCAAGGAGAAATGGTACAGTCAAAATTTGGGCTGCCACAGATTGCTGTCAGACAGCTAGAGATATACACAACAGCTGTGCTGCTTACAACGTTGCATCCACCACACCCTGCTCGAGAACAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

117

Amino Acids

13.45

Weight (kDa)

5.49

Isoelectric Point (pI)

55.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	20 - 69	2.2e-10	Phosphoenolpyruvate carboxylase
PEPcase	PF00311	67 - 115	7e-10	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	48
AccI	GTMKAC	1 cut(s)	70
AclI	AACGTT	1 cut(s)	317
AclWI	GGATC	2 cut(s)	27, 42
AcsI	RAATTY	2 cut(s)	152, 251
AfaI	GTAC	2 cut(s)	211, 243
AfiI	CCNNNNNNNGG	1 cut(s)	31
AhdI	GACNNNNNGTC	1 cut(s)	188
AhlI	ACTAGT	1 cut(s)	187
AluBI	AGCT	3 cut(s)	169, 283, 302
AluI	AGCT	3 cut(s)	169, 283, 302
Alw21I	GWGCWC	1 cut(s)	171
AlwI	GGATC	2 cut(s)	27, 42
Ama87I	CYCGRG	1 cut(s)	339
ApeKI	GCWGC	2 cut(s)	259, 307
ApoI	RAATTY	2 cut(s)	152, 251
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	339
AvaII	GGWCC	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	246, 294
BcuI	ACTAGT	1 cut(s)	187
BfaI	CTAG	3 cut(s)	188, 198, 284
BisI	GCNGC	2 cut(s)	260, 308
BlsI	GCNGC	2 cut(s)	261, 309
Bme18I	GGWCC	1 cut(s)	182
BmeRI	GACNNNNNGTC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	182
BmsI	GCATC	3 cut(s)	20, 79, 331
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	139, 322
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	246, 294
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	339
Bsp1286I	GDGCHC	2 cut(s)	119, 171
Bsp143I	GATC	3 cut(s)	19, 34, 218
BspCNI	CTCAG	1 cut(s)	7
BspPI	GGATC	2 cut(s)	27, 42
BsrI	ACTGG	1 cut(s)	153
BssMI	GATC	3 cut(s)	19, 34, 218
Bst4CI	ACNGT	2 cut(s)	125, 246
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	139, 322
BstKTI	GATC	3 cut(s)	22, 37, 221
BstMBI	GATC	3 cut(s)	19, 34, 218
BstNSI	RCATGY	1 cut(s)	77
BstSLI	GKGCMC	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	246, 294
BstXI	CCANNNNNNTGG	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	139, 322
BtsIMutI	CAGTG	2 cut(s)	47, 130
Cfr13I	GGNCC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	210, 242
CviAII	CATG	2 cut(s)	74, 202
CviJI	RGCY	4 cut(s)	169, 259, 283, 302
CviKI_1	RGCY	4 cut(s)	169, 259, 283, 302
CviQI	GTAC	2 cut(s)	210, 242
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	3 cut(s)	21, 36, 220
DpnII	GATC	3 cut(s)	19, 34, 218
DriI	GACNNNNNGTC	1 cut(s)	188
Eam1105I	GACNNNNNGTC	1 cut(s)	188
Ecl136II	GAGCTC	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	339
EcoICRI	GAGCTC	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	171
FaeI	CATG	2 cut(s)	77, 205
FaiI	YATR	6 cut(s)	48, 75, 113, 121, 203, 292
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	2 cut(s)	73, 201
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	260, 308
FokI	GGATG	2 cut(s)	146, 309
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	2 cut(s)	260, 308
FspBI	CTAG	3 cut(s)	188, 198, 284
GluI	GCNGC	2 cut(s)	260, 308
Hin1II	CATG	2 cut(s)	77, 205
HinfI	GANTC	2 cut(s)	55, 62
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	2 cut(s)	16, 278
Hpy188III	TCNNGA	2 cut(s)	59, 341
Hpy8I	GTNNAC	1 cut(s)	71
HpyCH4III	ACNGT	2 cut(s)	125, 246
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	4 cut(s)	4, 11, 92, 322
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	2 cut(s)	77, 205
Kzo9I	GATC	3 cut(s)	19, 34, 218
LpnPI	CCDG	4 cut(s)	38, 51, 134, 348
Lsp1109I	GCAGC	2 cut(s)	246, 294
LweI	GCATC	3 cut(s)	20, 79, 331
MaeI	CTAG	3 cut(s)	188, 198, 284
MaeII	ACGT	1 cut(s)	317
MalI	GATC	3 cut(s)	21, 36, 220
MboI	GATC	3 cut(s)	19, 34, 218
MboII	GAAGA	1 cut(s)	149
MfeI	CAATTG	1 cut(s)	222
MhlI	GDGCHC	2 cut(s)	119, 171
MluCI	AATT	4 cut(s)	93, 152, 222, 251
MnlI	CCTC	2 cut(s)	10, 199
MspA1I	CMGCKG	1 cut(s)	302
MunI	CAATTG	1 cut(s)	222
NdeII	GATC	3 cut(s)	19, 34, 218
NlaIII	CATG	2 cut(s)	77, 205
NspI	RCATGY	1 cut(s)	77
PaeR7I	CTCGAG	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	55, 62
PkrI	GCNGC	2 cut(s)	261, 309
PsiI	TTATAA	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	171
Psp1406I	AACGTT	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	2 cut(s)	211, 243
RsaNI	GTAC	2 cut(s)	210, 242
SacI	GAGCTC	1 cut(s)	171
SatI	GCNGC	2 cut(s)	260, 308
Sau3AI	GATC	3 cut(s)	19, 34, 218
Sau96I	GGNCC	1 cut(s)	182
SduI	GDGCHC	2 cut(s)	119, 171
SetI	ASST	6 cut(s)	70, 171, 199, 285, 304, 320
SfaNI	GCATC	3 cut(s)	20, 79, 331
Sfr274I	CTCGAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	339
SmoI	CTYRAG	1 cut(s)	339
SpeI	ACTAGT	1 cut(s)	187
Sse9I	AATT	4 cut(s)	93, 152, 222, 251
SspI	AATATT	1 cut(s)	104
SspMI	CTAG	3 cut(s)	188, 198, 284
SstI	GAGCTC	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	125, 246
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	1 cut(s)	340
TasI	AATT	4 cut(s)	93, 152, 222, 251
TfiI	GAWTC	2 cut(s)	55, 62
TscAI	CASTG	2 cut(s)	47, 130
TseI	GCWGC	2 cut(s)	259, 307
TspDTI	ATGAA	1 cut(s)	150
TspRI	CASTG	2 cut(s)	47, 130
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	2 cut(s)	152, 251
XceI	RCATGY	1 cut(s)	77
XhoI	CTCGAG	1 cut(s)	339
XmiI	GTMKAC	1 cut(s)	70
XspI	CTAG	3 cut(s)	188, 198, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.