Rroxscaffold_7G00185100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000999
Physical Location & Seq
Reverse (-)
24426723 .. 24427362
640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00185100.1

Sequence Viewer

Length: 285 bp
ATGTTGGAGGTGAAAAATTCCGTAGAGGAGTTTAACCCAACAATTAATACGGACTGGAGCGGGAGCGACACGGGAACAATCGAGAAGCTTCTTCTTTCGAGCGTTGACCTGAAATTTGACCGTACGCTCGAGGAGGAGGGGTTAATCGCCTTAATTGCAGGCCCAGCAAAATTTGACCACTCCCACGGTGAACTACCATATCACGCTGATTTGGATCTGTTACTTGAAGACACTAGTAGTTTAGATGAGCCGGTTGGTGCAAGTTTTCATAGTAATAGCGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.23

Weight (kDa)

4.22

Isoelectric Point (pI)

27.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 60
AciI CCGC 2 cut(s) 60, 279
AclWI GGATC 1 cut(s) 222
AcsI RAATTY 3 cut(s) 16, 113, 170
AfaI GTAC 1 cut(s) 124
AgsI TTSAA 1 cut(s) 227
AhlI ACTAGT 1 cut(s) 233
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
AlwI GGATC 1 cut(s) 222
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 1 cut(s) 160
ApoI RAATTY 3 cut(s) 16, 113, 170
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AseI ATTAAT 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 22, 200
AvaI CYCGRG 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 234
BcuI ACTAGT 1 cut(s) 233
BfaI CTAG 1 cut(s) 234
BisI GCNGC 1 cut(s) 280
BlsI GCNGC 1 cut(s) 281
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 76
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 184
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 59
Bse8I GATNNNNATC 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 184
BseJI GATNNNNATC 1 cut(s) 213
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 3 cut(s) 41, 146, 149
BseYI CCCAGC 1 cut(s) 163
BshFI GGCC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 1 cut(s) 251
BsiWI CGTACG 1 cut(s) 122
BsnI GGCC 1 cut(s) 162
BsoBI CYCGRG 1 cut(s) 128
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 2 cut(s) 60, 279
BspANI GGCC 1 cut(s) 162
BspPI GGATC 1 cut(s) 222
BsrBI CCGCTC 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 214
Bst4CI ACNGT 2 cut(s) 122, 188
BstC8I GCNNGC 1 cut(s) 160
BstDSI CCRYGG 1 cut(s) 184
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 155, 164
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 123
CviJI RGCY 4 cut(s) 88, 162, 250, 282
CviKI_1 RGCY 4 cut(s) 88, 162, 250, 282
CviQI GTAC 1 cut(s) 123
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 128
FaiI YATR 2 cut(s) 199, 270
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 1 cut(s) 280
Fsp4HI GCNGC 1 cut(s) 280
FspBI CTAG 1 cut(s) 234
GluI GCNGC 1 cut(s) 280
GsaI CCCAGC 1 cut(s) 167
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 1 cut(s) 162
HapII CCGG 1 cut(s) 251
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 86
HpaII CCGG 1 cut(s) 251
HphI GGTGA 2 cut(s) 22, 200
Hpy166II GTNNAC 2 cut(s) 106, 191
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 2 cut(s) 106, 191
HpyCH4III ACNGT 2 cut(s) 122, 188
HpyCH4V TGCA 2 cut(s) 158, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 164
Kzo9I GATC 1 cut(s) 214
LmnI GCTCC 2 cut(s) 57, 63
LpnPI CCDG 5 cut(s) 40, 122, 144, 177, 264
MaeI CTAG 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 219
MalI GATC 1 cut(s) 216
MbiI CCGCTC 1 cut(s) 60
MboI GATC 1 cut(s) 214
MboII GAAGA 2 cut(s) 83, 239
MflI RGATCY 1 cut(s) 214
MluCI AATT 5 cut(s) 16, 42, 113, 153, 170
MnlI CCTC 4 cut(s) 19, 124, 127, 130
MseI TTAA 4 cut(s) 33, 45, 143, 152
MspI CCGG 1 cut(s) 251
MwoI GCNNNNNNNGC 2 cut(s) 155, 164
NdeII GATC 1 cut(s) 214
PaeR7I CTCGAG 1 cut(s) 128
Pfl23II CGTACG 1 cut(s) 122
PkrI GCNGC 1 cut(s) 281
PshBI ATTAAT 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 163
PspLI CGTACG 1 cut(s) 122
PspPI GGNCC 1 cut(s) 161
PspXI VCTCGAGB 1 cut(s) 128
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SaqAI TTAA 4 cut(s) 33, 45, 143, 152
SatI GCNGC 1 cut(s) 280
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 1 cut(s) 161
SetI ASST 3 cut(s) 12, 90, 111
Sfr274I CTCGAG 1 cut(s) 128
SlaI CTCGAG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SpeI ACTAGT 1 cut(s) 233
Sse9I AATT 5 cut(s) 16, 42, 113, 153, 170
SsiI CCGC 2 cut(s) 60, 279
SspMI CTAG 1 cut(s) 234
TaaI ACNGT 2 cut(s) 122, 188
TaqI TCGA 3 cut(s) 81, 98, 129
TasI AATT 5 cut(s) 16, 42, 113, 153, 170
TauI GCSGC 1 cut(s) 282
Tru1I TTAA 4 cut(s) 33, 45, 143, 152
Tru9I TTAA 4 cut(s) 33, 45, 143, 152
TspDTI ATGAA 1 cut(s) 257
TspGWI ACGGA 2 cut(s) 10, 65
VspI ATTAAT 1 cut(s) 45
XapI RAATTY 3 cut(s) 16, 113, 170
XhoI CTCGAG 1 cut(s) 128
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.