Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006173.1

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Forward (+)

24902 .. 25303

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006173.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgtattccacgaaaatccagaattccttgcttcctggaggctacaccccagctgagcttggcttcctcaacataggaagccgcccctcaagaagaaagagctctactggaattggacatcttggggcaattccatgggtgtttgcatggactcaaaccagatttgttcttccaccttggcttggagttgaaccaggtttgaggggggtttgtgggaagggacacactgaagacttgaaatcagaacattatgaggtccacccattgagtattgaaacccaattttatcataatcttcttcaggaaatcccattccaatttgtcataagccttacttatatcaagtttcagagccataaaaccttcttgtcctctacgcagcctgtgcatatagtgagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

133

Amino Acids

14.98

Weight (kDa)

9.17

Isoelectric Point (pI)

58.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	2 cut(s)	249, 284
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	3 cut(s)	191, 238, 275
AjnI	CCWGG	2 cut(s)	34, 193
AluBI	AGCT	4 cut(s)	53, 58, 102, 399
AluI	AGCT	4 cut(s)	53, 58, 102, 399
Alw21I	GWGCWC	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	379
ApoI	RAATTY	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	391
BciT130I	CCWGG	2 cut(s)	36, 195
BfaI	CTAG	1 cut(s)	400
BisI	GCNGC	2 cut(s)	82, 380
BlpI	GCTNAGC	1 cut(s)	54
BlsI	GCNGC	2 cut(s)	83, 381
Bme1390I	CCNGG	2 cut(s)	36, 195
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmrFI	CCNGG	2 cut(s)	36, 195
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	57
Bpu1102I	GCTNAGC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	134, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	112
BseBI	CCWGG	2 cut(s)	36, 195
BseDI	CCNNGG	2 cut(s)	134, 176
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	391
BseYI	CCCAGC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp1720I	GCTNAGC	1 cut(s)	54
Bsp19I	CCATGG	1 cut(s)	134
BspACI	CCGC	1 cut(s)	82
BspCNI	CTCAG	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	134, 176
BssT1I	CCWWGG	2 cut(s)	134, 176
Bst2UI	CCWGG	2 cut(s)	36, 195
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstNI	CCWGG	2 cut(s)	36, 195
BstSCI	CCNGG	2 cut(s)	34, 193
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	1 cut(s)	237
BtgI	CCRYGG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	256
CsiI	ACCWGGT	1 cut(s)	193
CviAII	CATG	2 cut(s)	135, 147
DdeI	CTNAG	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	134, 176
Eco24I	GRGCYC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	102
Eco57I	CTGAAG	2 cut(s)	249, 284
EcoICRI	GAGCTC	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	22
EcoRII	CCWGG	2 cut(s)	34, 193
EcoT14I	CCWWGG	2 cut(s)	134, 176
EcoT38I	GRGCYC	1 cut(s)	104
ErhI	CCWWGG	2 cut(s)	134, 176
FaeI	CATG	2 cut(s)	138, 150
FalI	AAGNNNNNCTT	2 cut(s)	319, 351
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	2 cut(s)	134, 146
Fnu4HI	GCNGC	2 cut(s)	82, 380
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	2 cut(s)	82, 380
FspBI	CTAG	1 cut(s)	400
GluI	GCNGC	2 cut(s)	82, 380
GsaI	CCCAGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	57
Hin1II	CATG	2 cut(s)	138, 150
HinfI	GANTC	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	244, 351
Hpy188III	TCNNGA	3 cut(s)	19, 90, 302
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	2 cut(s)	211, 373
HpyCH4V	TGCA	2 cut(s)	146, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	2 cut(s)	138, 150
Lsp1109I	GCAGC	1 cut(s)	391
MabI	ACCWGGT	1 cut(s)	193
MaeI	CTAG	1 cut(s)	400
MboII	GAAGA	5 cut(s)	105, 161, 242, 287, 290
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	5 cut(s)	22, 111, 129, 281, 317
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	6 cut(s)	32, 77, 97, 195, 247, 382
MspA1I	CMGCKG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	36, 195
MvaI	CCWGG	2 cut(s)	36, 195
MwoI	GCNNNNNNNGC	1 cut(s)	385
NcoI	CCATGG	1 cut(s)	134
NlaIII	CATG	2 cut(s)	138, 150
PfoI	TCCNGGA	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	83, 381
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	104
Psp6I	CCWGG	2 cut(s)	34, 193
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	2 cut(s)	34, 193
PspPI	GGNCC	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	53
SacI	GAGCTC	1 cut(s)	104
SatI	GCNGC	2 cut(s)	82, 380
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	36, 195
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	8 cut(s)	55, 60, 104, 178, 199, 258, 365, 401
SexAI	ACCWGGT	1 cut(s)	193
SinI	GGWCC	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse9I	AATT	5 cut(s)	22, 111, 129, 281, 317
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	1 cut(s)	400
SstI	GAGCTC	1 cut(s)	104
StyD4I	CCNGG	2 cut(s)	34, 193
StyI	CCWWGG	2 cut(s)	134, 176
TasI	AATT	5 cut(s)	22, 111, 129, 281, 317
TauI	GCSGC	1 cut(s)	84
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	1 cut(s)	379
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	22
XspI	CTAG	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.