Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Forward (+)

29678418 .. 29681437

Gene Structure 3020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31452

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGAGGCAAGTGACATCCTTGCTGTGGAGCTTTTGCAAAAAGATGCACGACTTGCCGTTAGTGGACAGATAGGAAAGCCATGTCCTGGTGGAACGCTGCGTGTGGTTCCTTTGTTTGAAACTGTAAAGGACTTGAGAGGAGCTGGCTCAATGATCAGGAAATTATTGTCCATTGATTGGTACAGGGAGCACATCATCAAGAACCATAATGGGCATCAAGAGGGCGTTTTACTGCTGCCTGGGAACTTTACAAAGCTCAAGAGGATGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

90

Amino Acids

10.0

Weight (kDa)

9.58

Isoelectric Point (pI)

24.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	2 - 74	1.7e-15	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	86, 177
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	25, 86, 177
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	2 cut(s)	85, 238
AluBI	AGCT	3 cut(s)	31, 143, 256
AluI	AGCT	3 cut(s)	31, 143, 256
Alw21I	GWGCWC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	97, 235
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	84, 222
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	2 cut(s)	87, 240
BclI	TGATCA	1 cut(s)	153
BisI	GCNGC	2 cut(s)	98, 236
BlsI	GCNGC	2 cut(s)	99, 237
Bme1390I	CCNGG	2 cut(s)	87, 240
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	2 cut(s)	87, 240
BmsI	GCATC	2 cut(s)	34, 223
BpuEI	CTTGAG	2 cut(s)	154, 242
BsaJI	CCNNGG	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 86, 177
BseBI	CCWGG	2 cut(s)	87, 240
BseDI	CCNNGG	1 cut(s)	239
BseGI	GGATG	2 cut(s)	15, 270
BseLI	CCNNNNNNNGG	3 cut(s)	25, 86, 177
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	84, 222
BsiHKAI	GWGCWC	1 cut(s)	192
BslI	CCNNNNNNNGG	3 cut(s)	25, 86, 177
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	239
BssMI	GATC	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	87, 240
Bst4CI	ACNGT	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	145
BstF5I	GGATG	2 cut(s)	15, 270
BstKTI	GATC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	2 cut(s)	87, 240
BstSCI	CCNGG	2 cut(s)	85, 238
BstV1I	GCAGC	2 cut(s)	84, 222
BtsCI	GGATG	2 cut(s)	15, 270
Cac8I	GCNNGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	1 cut(s)	81
CviJI	RGCY	5 cut(s)	31, 79, 143, 147, 256
CviKI_1	RGCY	5 cut(s)	31, 79, 143, 147, 256
CviQI	GTAC	1 cut(s)	181
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	85, 238
FaeI	CATG	1 cut(s)	84
FaiI	YATR	2 cut(s)	82, 207
FatI	CATG	1 cut(s)	80
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	98, 236
FokI	GGATG	1 cut(s)	2
Fsp4HI	GCNGC	2 cut(s)	98, 236
GluI	GCNGC	2 cut(s)	98, 236
Hin1II	CATG	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188III	TCNNGA	4 cut(s)	157, 199, 218, 259
Hpy8I	GTNNAC	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	37, 47
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	3 cut(s)	28, 140, 187
LpnPI	CCDG	7 cut(s)	72, 99, 129, 142, 169, 225, 252
Lsp1109I	GCAGC	2 cut(s)	84, 222
LweI	GCATC	2 cut(s)	34, 223
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	1 cut(s)	161
MnlI	CCTC	3 cut(s)	131, 214, 255
MspR9I	CCNGG	2 cut(s)	87, 240
MvaI	CCWGG	2 cut(s)	87, 240
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	1 cut(s)	84
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	11
PflMI	CCANNNNNTGG	2 cut(s)	86, 177
PkrI	GCNGC	2 cut(s)	99, 237
Psp6I	CCWGG	2 cut(s)	85, 238
PspGI	CCWGG	2 cut(s)	85, 238
PspN4I	GGNNCC	1 cut(s)	108
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SatI	GCNGC	2 cut(s)	98, 236
Sau3AI	GATC	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	87, 240
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	3 cut(s)	33, 145, 258
SfaNI	GCATC	2 cut(s)	34, 223
SmlI	CTYRAG	2 cut(s)	133, 257
SmoI	CTYRAG	2 cut(s)	133, 257
Sse9I	AATT	1 cut(s)	161
StyD4I	CCNGG	2 cut(s)	85, 238
TaaI	ACNGT	1 cut(s)	124
TasI	AATT	1 cut(s)	161
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	2 cut(s)	97, 235
Tsp45I	GTSAC	1 cut(s)	11
Van91I	CCANNNNNTGG	2 cut(s)	86, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.