Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Forward (+)

29641175 .. 29641461

Gene Structure 287 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG244800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGGGGCGTTTTACTACTGCCTGGGAACTTTACAAAGCTCAAGAGGATGTTATAGCTGCATGCAATGAGTATGATATCAAAGTTACCCTGTTTCATGGGAGAGGAGGAAGTATTGGTCGTGGAGGGGGCCCTACATATCTTGCCATTCAGTCCCAGCCGCCTGGCTCTGTGATG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

58

Amino Acids

6.25

Weight (kDa)

6.52

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	2 - 57	4.4e-25	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	158
AjnI	CCWGG	2 cut(s)	20, 160
AluBI	AGCT	2 cut(s)	38, 56
AluI	AGCT	2 cut(s)	38, 56
AoxI	GGCC	1 cut(s)	127
ApaI	GGGCCC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	127, 128
BaeGI	GKGCMC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	43
BciT130I	CCWGG	2 cut(s)	22, 162
BisI	GCNGC	2 cut(s)	57, 158
BlsI	GCNGC	2 cut(s)	58, 159
Bme1390I	CCNGG	2 cut(s)	22, 162
BmgT120I	GGNCC	2 cut(s)	127, 128
BmiI	GGNNCC	2 cut(s)	128, 129
BmrFI	CCNGG	2 cut(s)	22, 162
BpuEI	CTTGAG	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	70
BseBI	CCWGG	2 cut(s)	22, 162
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	117
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	43
BseYI	CCCAGC	1 cut(s)	153
BshFI	GGCC	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	129
Bsp120I	GGGCCC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	131
BspACI	CCGC	1 cut(s)	158
BspANI	GGCC	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	128, 129
BsrDI	GCAATG	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	22, 162
BstC8I	GCNNGC	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	52
BstNI	CCWGG	2 cut(s)	22, 162
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	2 cut(s)	20, 160
BstSLI	GKGCMC	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	127, 128
CviAII	CATG	2 cut(s)	60, 95
CviJI	RGCY	5 cut(s)	38, 56, 129, 157, 165
CviKI_1	RGCY	5 cut(s)	38, 56, 129, 157, 165
Eco24I	GRGCYC	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	76
EcoO109I	RGGNCCY	2 cut(s)	127, 128
EcoRII	CCWGG	2 cut(s)	20, 160
EcoRV	GATATC	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	2 cut(s)	63, 98
FaiI	YATR	5 cut(s)	53, 61, 72, 96, 136
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	2 cut(s)	59, 94
Fnu4HI	GCNGC	2 cut(s)	57, 158
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	57, 158
GluI	GCNGC	2 cut(s)	57, 158
GsaI	CCCAGC	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	63, 98
Hpy188III	TCNNGA	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	59, 63
Hsp92II	CATG	2 cut(s)	63, 98
LpnPI	CCDG	5 cut(s)	7, 34, 101, 147, 167
Lsp1109I	GCAGC	1 cut(s)	43
MaeIII	GTNAC	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	131
MnlI	CCTC	4 cut(s)	37, 95, 98, 116
MspR9I	CCNGG	2 cut(s)	22, 162
MvaI	CCWGG	2 cut(s)	22, 162
NlaIII	CATG	2 cut(s)	63, 98
NlaIV	GGNNCC	2 cut(s)	128, 129
NspI	RCATGY	1 cut(s)	63
PaeI	GCATGC	1 cut(s)	63
PkrI	GCNGC	2 cut(s)	58, 159
Psp6I	CCWGG	2 cut(s)	20, 160
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	2 cut(s)	20, 160
PspN4I	GGNNCC	2 cut(s)	128, 129
PspOMI	GGGCCC	1 cut(s)	127
PspPI	GGNCC	2 cut(s)	127, 128
SatI	GCNGC	2 cut(s)	57, 158
Sau96I	GGNCC	2 cut(s)	127, 128
ScrFI	CCNGG	2 cut(s)	22, 162
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	2 cut(s)	40, 58
SgeI	CNNG	9 cut(s)	33, 34, 53, 72, 100, 107, 131, 152, 166
SmlI	CTYRAG	1 cut(s)	39
SmoI	CTYRAG	1 cut(s)	39
SphI	GCATGC	1 cut(s)	63
SsiI	CCGC	1 cut(s)	158
StyD4I	CCNGG	2 cut(s)	20, 160
TauI	GCSGC	1 cut(s)	160
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	1 cut(s)	83
XceI	RCATGY	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.