Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Reverse (-)

63935621 .. 63936708

Gene Structure 1088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00044890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGTCCTGGTGGAACGTAAGGCGTTTTACTGCTGCCTGGGAACTTTACAAAGCTCAAGAGGATGTTGTAGCTGCATGCAATGAGTATGATATCAAAGTTACCTTGTTTCATGGGAGAGGAGGAAGTATTGGTCATGGAGGGGGCCCTACATATCGTGCCATTCAGTCACAGCCGCTAGGCTCTGTGATGGAGAAGTATTCACCAATTCACAAGTTAACAGCTCCTTATGTCTTGAACTTGGACGTTATTATTGATATGCTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

88

Amino Acids

9.88

Weight (kDa)

6.81

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	9 - 63	5.1e-23	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	235
AjnI	CCWGG	2 cut(s)	5, 35
AluBI	AGCT	3 cut(s)	53, 71, 221
AluI	AGCT	3 cut(s)	53, 71, 221
AoxI	GGCC	1 cut(s)	142
ApaI	GGGCCC	1 cut(s)	146
ApeKI	GCWGC	2 cut(s)	32, 71
AspS9I	GGNCC	2 cut(s)	142, 143
AsuHPI	GGTGA	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	19, 58
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	2 cut(s)	7, 37
BfaI	CTAG	2 cut(s)	176, 260
BisI	GCNGC	3 cut(s)	33, 72, 173
BlsI	GCNGC	3 cut(s)	34, 73, 174
Bme1390I	CCNGG	2 cut(s)	7, 37
BmgT120I	GGNCC	2 cut(s)	142, 143
BmiI	GGNNCC	2 cut(s)	143, 144
BmrFI	CCNGG	2 cut(s)	7, 37
BpuEI	CTTGAG	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	36
Bse3DI	GCAATG	1 cut(s)	85
BseBI	CCWGG	2 cut(s)	7, 37
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	19, 58
BshFI	GGCC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	144
Bsp120I	GGGCCC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	146
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	143, 144
BsrDI	GCAATG	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	7, 37
BstC8I	GCNNGC	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	67
BstNI	CCWGG	2 cut(s)	7, 37
BstNSI	RCATGY	1 cut(s)	78
BstSCI	CCNGG	2 cut(s)	5, 35
BstSLI	GKGCMC	1 cut(s)	146
BstV1I	GCAGC	2 cut(s)	19, 58
BsuRI	GGCC	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	142, 143
CviAII	CATG	3 cut(s)	75, 110, 134
CviJI	RGCY	6 cut(s)	53, 71, 144, 172, 180, 221
CviKI_1	RGCY	6 cut(s)	53, 71, 144, 172, 180, 221
Eco24I	GRGCYC	1 cut(s)	146
Eco32I	GATATC	1 cut(s)	91
EcoO109I	RGGNCCY	2 cut(s)	142, 143
EcoRII	CCWGG	2 cut(s)	5, 35
EcoRV	GATATC	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	146
FaeI	CATG	3 cut(s)	78, 113, 137
FaiI	YATR	7 cut(s)	76, 87, 111, 135, 151, 228, 257
FatI	CATG	3 cut(s)	74, 109, 133
Fnu4HI	GCNGC	3 cut(s)	33, 72, 173
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	3 cut(s)	33, 72, 173
FspBI	CTAG	2 cut(s)	176, 260
GluI	GCNGC	3 cut(s)	33, 72, 173
HaeIII	GGCC	1 cut(s)	144
Hin1II	CATG	3 cut(s)	78, 113, 137
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HpaI	GTTAAC	1 cut(s)	216
HphI	GGTGA	1 cut(s)	192
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188III	TCNNGA	2 cut(s)	56, 232
Hpy8I	GTNNAC	1 cut(s)	216
HpyCH4IV	ACGT	2 cut(s)	15, 243
HpyCH4V	TGCA	2 cut(s)	74, 78
HpySE526I	ACGT	2 cut(s)	15, 243
Hsp92II	CATG	3 cut(s)	78, 113, 137
KspAI	GTTAAC	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	3 cut(s)	19, 22, 49
Lsp1109I	GCAGC	2 cut(s)	19, 58
MaeI	CTAG	2 cut(s)	176, 260
MaeII	ACGT	2 cut(s)	15, 243
MaeIII	GTNAC	2 cut(s)	97, 165
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	1 cut(s)	204
MnlI	CCTC	4 cut(s)	52, 110, 113, 131
MseI	TTAA	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	7, 37
MvaI	CCWGG	2 cut(s)	7, 37
NlaIII	CATG	3 cut(s)	78, 113, 137
NlaIV	GGNNCC	2 cut(s)	143, 144
NmuCI	GTSAC	1 cut(s)	165
NspI	RCATGY	1 cut(s)	78
PaeI	GCATGC	1 cut(s)	78
PkrI	GCNGC	3 cut(s)	34, 73, 174
Psp6I	CCWGG	2 cut(s)	5, 35
PspGI	CCWGG	2 cut(s)	5, 35
PspN4I	GGNNCC	2 cut(s)	143, 144
PspOMI	GGGCCC	1 cut(s)	142
PspPI	GGNCC	2 cut(s)	142, 143
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	3 cut(s)	33, 72, 173
Sau96I	GGNCC	2 cut(s)	142, 143
ScrFI	CCNGG	2 cut(s)	7, 37
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	6 cut(s)	18, 55, 73, 104, 223, 246
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
SphI	GCATGC	1 cut(s)	78
Sse9I	AATT	1 cut(s)	204
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	2 cut(s)	176, 260
StyD4I	CCNGG	2 cut(s)	5, 35
TaiI	ACGT	2 cut(s)	18, 246
TasI	AATT	1 cut(s)	204
TauI	GCSGC	1 cut(s)	175
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TseFI	GTSAC	1 cut(s)	165
TseI	GCWGC	2 cut(s)	32, 71
Tsp45I	GTSAC	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	98
XceI	RCATGY	1 cut(s)	78
XspI	CTAG	2 cut(s)	176, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.