Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Reverse (-)

17023806 .. 17027980

Gene Structure 4175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00231670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCCGGTGCTTGCTAGCTCGAGTCCGCGGTCGGGGAGATGCCATCGAATGGTTGCGGATCCGAGGAGTTTGACCCAACAATTAATGCGGACTAGAGCGGGAGCTGACACGGGAACAATCGAGAAGCTTCCCTCGAGCGTTGACCTAGAGTTTGACCGTCGGCTCAAGGAGAAGGGGGGTACCGCAGAAAACCCTCGATGCCTAAGTCGTGACCTTAATCTCTCCGATCAACCGCACCCTCTCCATCGAGGACACCCATCTCCGCCGCTCCCCATCGACATTCGCCGCTACACTCTACTGCGGAGCAACCTCGTTTGCAAAGTCACCCAAATCATCCTCAACCAATCCCGCTCCAGCACGTTAGACCCCTTCCTCAACCTCTCTGACTCCCTCACCCTCGCCGAAGCCTTCGAGATCCTCAAATCCCTCAAAATATTCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

147

Amino Acids

16.48

Weight (kDa)

9.92

Isoelectric Point (pI)

59.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	179
AccB7I	CCANNNNNTGG	1 cut(s)	49
AccBSI	CCGCTC	3 cut(s)	98, 268, 351
AccII	CGCG	1 cut(s)	28
AclWI	GGATC	3 cut(s)	53, 66, 409
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	2 cut(s)	32, 49
AluBI	AGCT	3 cut(s)	18, 104, 127
AluI	AGCT	3 cut(s)	18, 104, 127
AlwI	GGATC	3 cut(s)	53, 66, 409
Ama87I	CYCGRG	2 cut(s)	19, 133
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AseI	ATTAAT	1 cut(s)	83
Asp718I	GGTACC	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	316, 385
AsuNHI	GCTAGC	1 cut(s)	14
AvaI	CYCGRG	2 cut(s)	19, 133
BamHI	GGATCC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	179
BccI	CCATC	4 cut(s)	51, 252, 265, 281
BfaI	CTAG	3 cut(s)	15, 93, 146
BisI	GCNGC	2 cut(s)	266, 286
BlsI	GCNGC	2 cut(s)	267, 287
BmeT110I	CYCGRG	2 cut(s)	19, 133
BmiI	GGNNCC	2 cut(s)	60, 181
BmsI	GCATC	2 cut(s)	29, 188
BmtI	GCTAGC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	337
BpuEI	CTTGAG	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	26, 62
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 49
Bse118I	RCCGGY	1 cut(s)	4
BseDI	CCNNGG	2 cut(s)	26, 62
BseGI	GGATG	1 cut(s)	333
BseLI	CCNNNNNNNGG	2 cut(s)	32, 49
BseRI	GAGGAG	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	28
Bsh1285I	CGRYCG	1 cut(s)	32
BshNI	GGYRCC	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	32
BsiHKCI	CYCGRG	2 cut(s)	19, 133
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	32, 49
BsoBI	CYCGRG	2 cut(s)	19, 133
Bsp143I	GATC	3 cut(s)	58, 226, 414
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	60, 181
BspOI	GCTAGC	1 cut(s)	18
BspPI	GGATC	3 cut(s)	53, 66, 409
BspT107I	GGYRCC	1 cut(s)	179
BsrBI	CCGCTC	3 cut(s)	98, 268, 351
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	26, 62
BssMI	GATC	3 cut(s)	58, 226, 414
Bst4CI	ACNGT	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	12, 16
BstDEI	CTNAG	1 cut(s)	203
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	333
BstFNI	CGCG	1 cut(s)	28
BstKTI	GATC	3 cut(s)	61, 229, 417
BstMBI	GATC	3 cut(s)	58, 226, 414
BstMCI	CGRYCG	1 cut(s)	32
BstUI	CGCG	1 cut(s)	28
BstX2I	RGATCY	2 cut(s)	58, 414
BstYI	RGATCY	2 cut(s)	58, 414
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	333
Cac8I	GCNNGC	2 cut(s)	12, 16
Cfr10I	RCCGGY	1 cut(s)	4
Cfr42I	CCGCGG	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	180
CviJI	RGCY	5 cut(s)	18, 104, 127, 163, 407
CviKI_1	RGCY	5 cut(s)	18, 104, 127, 163, 407
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	3 cut(s)	60, 228, 416
DpnII	GATC	3 cut(s)	58, 226, 414
EciI	GGCGGA	1 cut(s)	252
Eco88I	CYCGRG	2 cut(s)	19, 133
FauI	CCCGC	2 cut(s)	91, 356
Fnu4HI	GCNGC	2 cut(s)	266, 286
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	266, 286
FspBI	CTAG	3 cut(s)	15, 93, 146
GluI	GCNGC	2 cut(s)	266, 286
GsuI	CTGGAG	1 cut(s)	337
HapII	CCGG	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	2 cut(s)	22, 386
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	2 cut(s)	316, 385
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	3 cut(s)	63, 226, 385
Hpy188III	TCNNGA	3 cut(s)	121, 209, 412
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	1 cut(s)	162
HpyAV	CCTTC	3 cut(s)	166, 379, 418
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	359
HpyCH4V	TGCA	1 cut(s)	318
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	1 cut(s)	359
KpnI	GGTACC	1 cut(s)	183
KspI	CCGCGG	1 cut(s)	29
Kzo9I	GATC	3 cut(s)	58, 226, 414
LmnI	GCTCC	4 cut(s)	101, 273, 303, 356
LpnPI	CCDG	2 cut(s)	18, 367
LweI	GCATC	2 cut(s)	29, 188
MaeI	CTAG	3 cut(s)	15, 93, 146
MaeII	ACGT	1 cut(s)	359
MaeIII	GTNAC	2 cut(s)	209, 322
MalI	GATC	3 cut(s)	60, 228, 416
MbiI	CCGCTC	3 cut(s)	98, 268, 351
MboI	GATC	3 cut(s)	58, 226, 414
MflI	RGATCY	2 cut(s)	58, 414
MluCI	AATT	1 cut(s)	80
MlyI	GAGTC	2 cut(s)	31, 380
MseI	TTAA	2 cut(s)	83, 216
MspA1I	CMGCKG	2 cut(s)	28, 441
MspI	CCGG	1 cut(s)	5
MvnI	CGCG	1 cut(s)	28
NdeII	GATC	3 cut(s)	58, 226, 414
NheI	GCTAGC	1 cut(s)	14
NlaIV	GGNNCC	2 cut(s)	60, 181
NmuCI	GTSAC	2 cut(s)	209, 322
PaeR7I	CTCGAG	2 cut(s)	19, 133
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	267, 287
PleI	GAGTC	2 cut(s)	30, 380
PpsI	GAGTC	2 cut(s)	30, 380
PshBI	ATTAAT	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	60, 181
PspXI	VCTCGAGB	2 cut(s)	19, 133
PsuI	RGATCY	2 cut(s)	58, 414
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SacII	CCGCGG	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	83, 216
SatI	GCNGC	2 cut(s)	266, 286
Sau3AI	GATC	3 cut(s)	58, 226, 414
SchI	GAGTC	2 cut(s)	31, 380
SetI	ASST	8 cut(s)	20, 106, 129, 147, 216, 312, 362, 381
SfaNI	GCATC	2 cut(s)	29, 188
Sfr274I	CTCGAG	2 cut(s)	19, 133
Sfr303I	CCGCGG	1 cut(s)	29
SgrBI	CCGCGG	1 cut(s)	29
SlaI	CTCGAG	2 cut(s)	19, 133
SmlI	CTYRAG	3 cut(s)	19, 133, 164
SmoI	CTYRAG	3 cut(s)	19, 133, 164
Sse9I	AATT	1 cut(s)	80
SspI	AATATT	1 cut(s)	435
SspMI	CTAG	3 cut(s)	15, 93, 146
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	362
TaqI	TCGA	8 cut(s)	20, 46, 120, 134, 196, 247, 276, 411
TasI	AATT	1 cut(s)	80
TauI	GCSGC	2 cut(s)	268, 288
Tru1I	TTAA	2 cut(s)	83, 216
Tru9I	TTAA	2 cut(s)	83, 216
TseFI	GTSAC	2 cut(s)	209, 322
Tsp45I	GTSAC	2 cut(s)	209, 322
Van91I	CCANNNNNTGG	1 cut(s)	49
VspI	ATTAAT	1 cut(s)	83
XhoI	CTCGAG	2 cut(s)	19, 133
XspI	CTAG	3 cut(s)	15, 93, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.