Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Reverse (-)

26912952 .. 26920522

Gene Structure 7571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00021870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAGAGGGCAAGAGAAAGGGGAGATGAGAAAAATAAGAAAGAAGTTTGGGCACCTCTTCCGGTCTTACCATGTTCACAAGGTTTTGAGTCACTCCTCACCCCCATCAAGAAGAAGAAACAAATTGGAGGATTGCTCAAGGGAGCACTTGTTGACATGGGAGCTTTCCTTGGAAGTTCAAAGAAGTGGGGTCCGTCCCAAAGCGTACAATATCTTAAACGTGGATTGGACTCTCTCGATACTGCAAGGCCATCTCCAATTGTGAAGAGGAGTTTGACCCAACAATTAATGCGGACTGGAGCGGGAGCTGACCTGGGAACAATCGAGAAGGTTCCCTCGAGCGCTGACACGGAGTTTGACCGTCGACTCGAGGAGAAGGGGGGTACCGCGAGAAAACCCTCTCGATGCCTAAGTCGATGTAGAGGCCCATATAAGAAGATCCCCATTCCTTGTTTAGAGTCGGCATCTCATCTAGTCGACGACGCCGACGCCGACGTGCCCAAATCGGGACTCAAATCGCCTTTGTCTTGCAGCCATTCTAGTGTCAAGTCTCCGCGTCACCGACTTGTCCGCTTGTGGAGTCTCCGGTGCCTTGCCCCCGCCGCCGAAGTGTGTTCGGTGCCCCCACCGAGCTACCTTATTCCTAAGCCATGCCCCCGGGCGGTTCAAACCGTACTTCGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

24.86

Weight (kDa)

9.84

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	383
AccB1I	GGYRCC	4 cut(s)	52, 383, 588, 619
AccBSI	CCGCTC	1 cut(s)	302
AccI	GTMKAC	2 cut(s)	364, 477
AccII	CGCG	2 cut(s)	389, 556
AciI	CCGC	8 cut(s)	292, 302, 387, 554, 571, 600, 603, 662
AclWI	GGATC	1 cut(s)	433
AcyI	GRCGYC	2 cut(s)	483, 489
AfaI	GTAC	3 cut(s)	207, 385, 675
AfeI	AGCGCT	1 cut(s)	343
AfiI	CCNNNNNNNGG	2 cut(s)	506, 661
AgsI	TTSAA	2 cut(s)	180, 668
AjiI	CACGTC	1 cut(s)	496
AjnI	CCWGG	1 cut(s)	312
AluBI	AGCT	3 cut(s)	164, 308, 633
AluI	AGCT	3 cut(s)	164, 308, 633
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	555, 587
AlwI	GGATC	1 cut(s)	433
Ama87I	CYCGRG	3 cut(s)	337, 368, 657
Aor51HI	AGCGCT	1 cut(s)	343
AoxI	GGCC	2 cut(s)	248, 424
ApeKI	GCWGC	1 cut(s)	531
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AseI	ATTAAT	1 cut(s)	287
Asp718I	GGTACC	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	2 cut(s)	191, 425
AsuC2I	CCSGG	2 cut(s)	658, 659
AsuHPI	GGTGA	2 cut(s)	91, 551
AvaI	CYCGRG	3 cut(s)	337, 368, 657
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	3 cut(s)	55, 501, 624
BanI	GGYRCC	4 cut(s)	52, 383, 588, 619
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	543
BccI	CCATC	2 cut(s)	113, 259
BciT130I	CCWGG	1 cut(s)	314
BcnI	CCSGG	2 cut(s)	658, 659
BcoDI	GTCTC	2 cut(s)	555, 587
BfaI	CTAG	2 cut(s)	473, 540
BfoI	RGCGCY	1 cut(s)	345
BisI	GCNGC	2 cut(s)	532, 603
BlsI	GCNGC	2 cut(s)	533, 604
Bme1390I	CCNGG	3 cut(s)	314, 658, 659
Bme18I	GGWCC	1 cut(s)	191
BmeT110I	CYCGRG	3 cut(s)	337, 368, 657
BmgBI	CACGTC	1 cut(s)	496
BmgT120I	GGNCC	2 cut(s)	191, 425
BmiI	GGNNCC	6 cut(s)	54, 192, 333, 385, 590, 621
BmrFI	CCNGG	3 cut(s)	314, 658, 659
BmsI	GCATC	2 cut(s)	395, 473
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	2 cut(s)	658, 659
BsaHI	GRCGYC	2 cut(s)	483, 489
BsaJI	CCNNGG	4 cut(s)	169, 313, 656, 657
BsaWI	WCCGGW	2 cut(s)	61, 585
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	2 cut(s)	506, 661
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	4 cut(s)	169, 313, 656, 657
BseLI	CCNNNNNNNGG	2 cut(s)	506, 661
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	3 cut(s)	86, 283, 386
BseSI	GKGCMC	3 cut(s)	55, 501, 624
BseXI	GCAGC	1 cut(s)	543
Bsh1236I	CGCG	2 cut(s)	389, 556
BshFI	GGCC	2 cut(s)	250, 426
BshNI	GGYRCC	4 cut(s)	52, 383, 588, 619
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	3 cut(s)	337, 368, 657
BsiSI	CCGG	3 cut(s)	62, 586, 658
BslFI	GGGAC	2 cut(s)	181, 522
BslI	CCNNNNNNNGG	2 cut(s)	506, 661
BsmAI	GTCTC	2 cut(s)	555, 587
BsmFI	GGGAC	2 cut(s)	181, 522
BsnI	GGCC	2 cut(s)	250, 426
BsoBI	CYCGRG	3 cut(s)	337, 368, 657
Bsp1286I	GDGCHC	4 cut(s)	55, 148, 501, 624
Bsp143I	GATC	1 cut(s)	438
BspACI	CCGC	8 cut(s)	292, 302, 387, 554, 571, 600, 603, 662
BspANI	GGCC	2 cut(s)	250, 426
BspFNI	CGCG	2 cut(s)	389, 556
BspLI	GGNNCC	6 cut(s)	54, 192, 333, 385, 590, 621
BspPI	GGATC	1 cut(s)	433
BspT107I	GGYRCC	4 cut(s)	52, 383, 588, 619
BsrBI	CCGCTC	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	4 cut(s)	169, 313, 656, 657
BssMI	GATC	1 cut(s)	438
BssNI	GRCGYC	2 cut(s)	483, 489
BssT1I	CCWWGG	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	2 cut(s)	362, 673
Bst6I	CTCTTC	2 cut(s)	63, 260
BstACI	GRCGYC	2 cut(s)	483, 489
BstDEI	CTNAG	2 cut(s)	410, 645
BstFNI	CGCG	2 cut(s)	389, 556
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	1 cut(s)	441
BstMAI	GTCTC	2 cut(s)	555, 587
BstMBI	GATC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNI	CCWGG	1 cut(s)	314
BstSCI	CCNGG	3 cut(s)	312, 656, 657
BstSLI	GKGCMC	3 cut(s)	55, 501, 624
BstUI	CGCG	2 cut(s)	389, 556
BstV1I	GCAGC	1 cut(s)	543
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	250, 426
BtrI	CACGTC	1 cut(s)	496
CfoI	GCGC	1 cut(s)	344
Cfr13I	GGNCC	2 cut(s)	191, 425
Cfr9I	CCCGGG	1 cut(s)	657
CseI	GACGC	3 cut(s)	491, 497, 545
Csp6I	GTAC	3 cut(s)	206, 384, 674
CviAII	CATG	4 cut(s)	72, 157, 651, 684
CviJI	RGCY	7 cut(s)	164, 250, 308, 426, 534, 633, 649
CviKI_1	RGCY	7 cut(s)	164, 250, 308, 426, 534, 633, 649
CviQI	GTAC	3 cut(s)	206, 384, 674
DdeI	CTNAG	2 cut(s)	410, 645
DpnI	GATC	1 cut(s)	440
DpnII	GATC	1 cut(s)	438
Eam1104I	CTCTTC	2 cut(s)	63, 260
EarI	CTCTTC	2 cut(s)	63, 260
Eco130I	CCWWGG	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	191
Eco47III	AGCGCT	1 cut(s)	343
Eco88I	CYCGRG	3 cut(s)	337, 368, 657
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	4 cut(s)	75, 160, 654, 687
FaiI	YATR	6 cut(s)	73, 158, 430, 432, 652, 685
FaqI	GGGAC	2 cut(s)	181, 522
FatI	CATG	4 cut(s)	71, 156, 650, 683
FauI	CCCGC	2 cut(s)	295, 607
FblI	GTMKAC	2 cut(s)	364, 477
Fnu4HI	GCNGC	2 cut(s)	532, 603
Fsp4HI	GCNGC	2 cut(s)	532, 603
FspBI	CTAG	2 cut(s)	473, 540
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	2 cut(s)	532, 603
GsuI	CTGGAG	1 cut(s)	318
HaeII	RGCGCY	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	250, 426
HapII	CCGG	3 cut(s)	62, 586, 658
HgaI	GACGC	3 cut(s)	491, 497, 545
HhaI	GCGC	1 cut(s)	344
Hin1I	GRCGYC	2 cut(s)	483, 489
Hin1II	CATG	4 cut(s)	75, 160, 654, 687
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HincII	GTYRAC	3 cut(s)	154, 365, 478
HindII	GTYRAC	3 cut(s)	154, 365, 478
HinfI	GANTC	6 cut(s)	89, 230, 366, 458, 510, 580
HpaII	CCGG	3 cut(s)	62, 586, 658
HphI	GGTGA	2 cut(s)	91, 551
Hpy166II	GTNNAC	4 cut(s)	77, 154, 365, 478
Hpy188III	TCNNGA	5 cut(s)	109, 236, 325, 402, 507
Hpy8I	GTNNAC	4 cut(s)	77, 154, 365, 478
Hpy99I	CGWCG	5 cut(s)	366, 482, 485, 491, 497
HpyAV	CCTTC	2 cut(s)	322, 370
HpyCH4III	ACNGT	2 cut(s)	362, 673
HpyCH4IV	ACGT	2 cut(s)	220, 495
HpyCH4V	TGCA	2 cut(s)	245, 531
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	2 cut(s)	410, 645
HpySE526I	ACGT	2 cut(s)	220, 495
Hsp92I	GRCGYC	2 cut(s)	483, 489
Hsp92II	CATG	4 cut(s)	75, 160, 654, 687
HspAI	GCGC	1 cut(s)	342
KpnI	GGTACC	1 cut(s)	387
Kzo9I	GATC	1 cut(s)	438
LmnI	GCTCC	4 cut(s)	143, 161, 299, 305
LpnPI	CCDG	6 cut(s)	75, 282, 299, 326, 599, 671
Lsp1109I	GCAGC	1 cut(s)	543
LweI	GCATC	2 cut(s)	395, 473
MaeI	CTAG	2 cut(s)	473, 540
MaeII	ACGT	2 cut(s)	220, 495
MaeIII	GTNAC	2 cut(s)	90, 557
MalI	GATC	1 cut(s)	440
MbiI	CCGCTC	1 cut(s)	302
MboI	GATC	1 cut(s)	438
MboII	GAAGA	5 cut(s)	50, 124, 127, 277, 448
MfeI	CAATTG	1 cut(s)	258
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	4 cut(s)	55, 148, 501, 624
MluCI	AATT	3 cut(s)	123, 258, 284
MlyI	GAGTC	6 cut(s)	98, 224, 360, 467, 504, 589
MnlI	CCTC	8 cut(s)	66, 107, 122, 261, 346, 364, 409, 416
MseI	TTAA	2 cut(s)	216, 287
MslI	CAYNNNNRTG	1 cut(s)	540
MspI	CCGG	3 cut(s)	62, 586, 658
MspR9I	CCNGG	3 cut(s)	314, 658, 659
MunI	CAATTG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	314
MvnI	CGCG	2 cut(s)	389, 556
MwoI	GCNNNNNNNGC	1 cut(s)	602
NciI	CCSGG	2 cut(s)	658, 659
NdeII	GATC	1 cut(s)	438
NlaIII	CATG	4 cut(s)	75, 160, 654, 687
NlaIV	GGNNCC	6 cut(s)	54, 192, 333, 385, 590, 621
NmuCI	GTSAC	2 cut(s)	90, 557
PaeR7I	CTCGAG	2 cut(s)	337, 368
PcsI	WCGNNNNNNNCGW	2 cut(s)	483, 489
PkrI	GCNGC	2 cut(s)	533, 604
PleI	GAGTC	6 cut(s)	97, 224, 360, 466, 504, 588
PpsI	GAGTC	6 cut(s)	97, 224, 360, 466, 504, 588
PshBI	ATTAAT	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	6 cut(s)	54, 192, 333, 385, 590, 621
PspPI	GGNCC	2 cut(s)	191, 425
PspXI	VCTCGAGB	2 cut(s)	337, 368
PsuI	RGATCY	1 cut(s)	438
RsaI	GTAC	3 cut(s)	207, 385, 675
RsaNI	GTAC	3 cut(s)	206, 384, 674
RseI	CAYNNNNRTG	1 cut(s)	540
SalI	GTCGAC	2 cut(s)	363, 476
SaqAI	TTAA	2 cut(s)	216, 287
SatI	GCNGC	2 cut(s)	532, 603
Sau3AI	GATC	1 cut(s)	438
Sau96I	GGNCC	2 cut(s)	191, 425
SchI	GAGTC	6 cut(s)	98, 224, 360, 467, 504, 589
ScrFI	CCNGG	3 cut(s)	314, 658, 659
SduI	GDGCHC	4 cut(s)	55, 148, 501, 624
SfaNI	GCATC	2 cut(s)	395, 473
Sfr274I	CTCGAG	2 cut(s)	337, 368
SinI	GGWCC	1 cut(s)	191
SlaI	CTCGAG	2 cut(s)	337, 368
SmaI	CCCGGG	1 cut(s)	659
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	3 cut(s)	137, 337, 368
SmoI	CTYRAG	3 cut(s)	137, 337, 368
Sse9I	AATT	3 cut(s)	123, 258, 284
SsiI	CCGC	8 cut(s)	292, 302, 387, 554, 571, 600, 603, 662
SspMI	CTAG	2 cut(s)	473, 540
StyD4I	CCNGG	3 cut(s)	312, 656, 657
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	2 cut(s)	362, 673
TaiI	ACGT	2 cut(s)	223, 498
TaqI	TCGA	9 cut(s)	237, 324, 338, 364, 369, 403, 415, 477, 679
TasI	AATT	3 cut(s)	123, 258, 284
TauI	GCSGC	1 cut(s)	605
Tru1I	TTAA	2 cut(s)	216, 287
Tru9I	TTAA	2 cut(s)	216, 287
TseFI	GTSAC	2 cut(s)	90, 557
TseI	GCWGC	1 cut(s)	531
Tsp45I	GTSAC	2 cut(s)	90, 557
TspGWI	ACGGA	2 cut(s)	183, 365
TspMI	CCCGGG	1 cut(s)	657
VpaK11BI	GGWCC	1 cut(s)	191
VspI	ATTAAT	1 cut(s)	287
XhoI	CTCGAG	2 cut(s)	337, 368
XmaI	CCCGGG	1 cut(s)	657
XmiI	GTMKAC	2 cut(s)	364, 477
XspI	CTAG	2 cut(s)	473, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.