Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Forward (+)

30115225 .. 30124594

Gene Structure 9370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033642

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGTGTTGGTTATTCATGGGGCAGTAAATCATGTTTTGAGGGGAATAAAACAAGCCCTGAATCTGCATCTGAGGATCACCAGAGTTGGGATCATCAGTGTTATAATAGGAATCAGTGAGTGGGATGAAGAAAAGAAACTGGAATTTCTAACAAGAGAGCTCAAAGGAAAAATACCGCTAGTCCCACCTAGCATGGAGGTTGCTTCTGATGTTAAAGAAGTACTGGATACCTTCCGCATTGCTGCTGAGCTAGGGAGTGATTCGCTTGGAGCATATGTGATTTCTATGGCTTCTAACGAAAGCCGTGTCCTGGTGGAACATAAGCTGCGTGTGGTTCCTTTGTTTGAAACTGTAAAGGACTTGAGAGGAGCTGGCTCAATGATCAGGAAATTATTGTCCATTGATTGGTACTGGGAGCACATCATCAAGAACCGTAATGGGCATCAAGAGATGCAGGGCGTTTTACAGTTTTACTGCTGCCTGGGAACTTTACAAAGCTCATGCAATGAGTATGATATCAAAGTTACCCTGTTTCATGGGAGAGGAGGGAAGTATTGGTCGTGGAGGGGGCCCTACACATCTTGCCATTCAGTCCCAGCCGCCTGGCTCTGCTATGGGTACTCTATGATCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

212

Amino Acids

23.9

Weight (kDa)

8.56

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	39 - 183	5.3e-27	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	405
AciI	CCGC	3 cut(s)	176, 235, 600
AclWI	GGATC	2 cut(s)	83, 98
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	3 cut(s)	222, 410, 620
AfiI	CCNNNNNNNGG	3 cut(s)	87, 310, 405
AgsI	TTSAA	1 cut(s)	347
AjnI	CCWGG	3 cut(s)	309, 480, 602
AluBI	AGCT	5 cut(s)	160, 250, 325, 371, 498
AluI	AGCT	5 cut(s)	160, 250, 325, 371, 498
Alw21I	GWGCWC	2 cut(s)	162, 420
AlwI	GGATC	2 cut(s)	83, 98
AoxI	GGCC	1 cut(s)	569
ApaI	GGGCCC	1 cut(s)	573
ApeKI	GCWGC	3 cut(s)	242, 325, 477
ApoI	RAATTY	1 cut(s)	143
ArsI	GACNNNNNNTTYG	2 cut(s)	291, 323
AspS9I	GGNCC	2 cut(s)	569, 570
AsuHPI	GGTGA	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	573
BanII	GRGCYC	2 cut(s)	162, 573
Bbv12I	GWGCWC	2 cut(s)	162, 420
BbvI	GCAGC	3 cut(s)	229, 312, 464
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	3 cut(s)	311, 482, 604
BciVI	GTATCC	1 cut(s)	220
BclI	TGATCA	2 cut(s)	381, 627
BfaI	CTAG	3 cut(s)	179, 189, 251
BfuI	GTATCC	1 cut(s)	220
BisI	GCNGC	4 cut(s)	243, 326, 478, 600
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	4 cut(s)	244, 327, 479, 601
BmcAI	AGTACT	1 cut(s)	222
Bme1390I	CCNGG	3 cut(s)	311, 482, 604
BmgT120I	GGNCC	2 cut(s)	569, 570
BmiI	GGNNCC	3 cut(s)	336, 570, 571
BmrFI	CCNGG	3 cut(s)	311, 482, 604
BmrI	ACTGGG	1 cut(s)	421
BmsI	GCATC	3 cut(s)	76, 441, 451
BmuI	ACTGGG	1 cut(s)	421
Bpu1102I	GCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	481
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 310, 405
Bse1I	ACTGG	3 cut(s)	144, 228, 416
Bse3DI	GCAATG	2 cut(s)	237, 511
BseBI	CCWGG	3 cut(s)	311, 482, 604
BseDI	CCNNGG	1 cut(s)	481
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	3 cut(s)	87, 310, 405
BseMI	GCAATG	2 cut(s)	237, 511
BseMII	CTCAG	2 cut(s)	62, 237
BseNI	ACTGG	3 cut(s)	144, 228, 416
BseRI	GAGGAG	2 cut(s)	381, 558
BseSI	GKGCMC	1 cut(s)	573
BseXI	GCAGC	3 cut(s)	229, 312, 464
BseYI	CCCAGC	1 cut(s)	595
BshFI	GGCC	1 cut(s)	571
BsiHKAI	GWGCWC	2 cut(s)	162, 420
BslFI	GGGAC	2 cut(s)	167, 578
BslI	CCNNNNNNNGG	3 cut(s)	87, 310, 405
BsmFI	GGGAC	2 cut(s)	167, 578
BsnI	GGCC	1 cut(s)	571
Bsp120I	GGGCCC	1 cut(s)	569
Bsp1286I	GDGCHC	3 cut(s)	162, 420, 573
Bsp143I	GATC	4 cut(s)	75, 90, 381, 627
Bsp1720I	GCTNAGC	1 cut(s)	246
BspACI	CCGC	3 cut(s)	176, 235, 600
BspANI	GGCC	1 cut(s)	571
BspCNI	CTCAG	2 cut(s)	63, 238
BspLI	GGNNCC	3 cut(s)	336, 570, 571
BspPI	GGATC	2 cut(s)	83, 98
BsrDI	GCAATG	2 cut(s)	237, 511
BsrI	ACTGG	3 cut(s)	144, 228, 416
BssECI	CCNNGG	1 cut(s)	481
BssMI	GATC	4 cut(s)	75, 90, 381, 627
Bst2UI	CCWGG	3 cut(s)	311, 482, 604
Bst4CI	ACNGT	3 cut(s)	352, 434, 468
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	2 cut(s)	71, 246
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	4 cut(s)	78, 93, 384, 630
BstMBI	GATC	4 cut(s)	75, 90, 381, 627
BstNI	CCWGG	3 cut(s)	311, 482, 604
BstSCI	CCNGG	3 cut(s)	309, 480, 602
BstSLI	GKGCMC	1 cut(s)	573
BstV1I	GCAGC	3 cut(s)	229, 312, 464
BstXI	CCANNNNNNTGG	1 cut(s)	603
BsuI	GTATCC	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	571
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	2 cut(s)	103, 121
Cac8I	GCNNGC	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	569, 570
Csp6I	GTAC	3 cut(s)	221, 409, 619
CviAII	CATG	5 cut(s)	17, 32, 193, 501, 536
CviQI	GTAC	3 cut(s)	221, 409, 619
DdeI	CTNAG	2 cut(s)	71, 246
DpnI	GATC	4 cut(s)	77, 92, 383, 629
DpnII	GATC	4 cut(s)	75, 90, 381, 627
Ecl136II	GAGCTC	1 cut(s)	160
Eco24I	GRGCYC	2 cut(s)	162, 573
Eco32I	GATATC	1 cut(s)	517
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	2 cut(s)	569, 570
EcoRII	CCWGG	3 cut(s)	309, 480, 602
EcoRV	GATATC	1 cut(s)	517
EcoT38I	GRGCYC	2 cut(s)	162, 573
FaeI	CATG	5 cut(s)	20, 35, 196, 504, 539
FaqI	GGGAC	2 cut(s)	167, 578
FatI	CATG	5 cut(s)	16, 31, 192, 500, 535
FauNDI	CATATG	1 cut(s)	274
FbaI	TGATCA	2 cut(s)	381, 627
Fnu4HI	GCNGC	4 cut(s)	243, 326, 478, 600
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	2 cut(s)	162, 573
Fsp4HI	GCNGC	4 cut(s)	243, 326, 478, 600
FspBI	CTAG	3 cut(s)	179, 189, 251
GluI	GCNGC	4 cut(s)	243, 326, 478, 600
GsaI	CCCAGC	1 cut(s)	599
HaeIII	GGCC	1 cut(s)	571
Hin1II	CATG	5 cut(s)	20, 35, 196, 504, 539
HinfI	GANTC	3 cut(s)	61, 111, 260
HphI	GGTGA	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	72, 208
Hpy188III	TCNNGA	3 cut(s)	385, 427, 446
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	3 cut(s)	352, 434, 468
HpyCH4V	TGCA	3 cut(s)	67, 454, 504
HpyF3I	CTNAG	2 cut(s)	71, 246
Hsp92II	CATG	5 cut(s)	20, 35, 196, 504, 539
Ksp22I	TGATCA	2 cut(s)	381, 627
Kzo9I	GATC	4 cut(s)	75, 90, 381, 627
LmnI	GCTCC	3 cut(s)	269, 368, 415
Lsp1109I	GCAGC	3 cut(s)	229, 312, 464
LweI	GCATC	3 cut(s)	76, 441, 451
MaeI	CTAG	3 cut(s)	179, 189, 251
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	4 cut(s)	77, 92, 383, 629
MboI	GATC	4 cut(s)	75, 90, 381, 627
MboII	GAAGA	1 cut(s)	140
MhlI	GDGCHC	3 cut(s)	162, 420, 573
MluCI	AATT	2 cut(s)	143, 389
MnlI	CCTC	7 cut(s)	33, 66, 190, 359, 536, 539, 558
MseI	TTAA	1 cut(s)	213
MspR9I	CCNGG	3 cut(s)	311, 482, 604
MvaI	CCWGG	3 cut(s)	311, 482, 604
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	4 cut(s)	75, 90, 381, 627
NlaIII	CATG	5 cut(s)	20, 35, 196, 504, 539
NlaIV	GGNNCC	3 cut(s)	336, 570, 571
PfeI	GAWTC	3 cut(s)	61, 111, 260
PflMI	CCANNNNNTGG	1 cut(s)	405
PkrI	GCNGC	4 cut(s)	244, 327, 479, 601
PsiI	TTATAA	1 cut(s)	104
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	3 cut(s)	309, 480, 602
PspFI	CCCAGC	1 cut(s)	595
PspGI	CCWGG	3 cut(s)	309, 480, 602
PspN4I	GGNNCC	3 cut(s)	336, 570, 571
PspOMI	GGGCCC	1 cut(s)	569
PspPI	GGNCC	2 cut(s)	569, 570
RsaI	GTAC	3 cut(s)	222, 410, 620
RsaNI	GTAC	3 cut(s)	221, 409, 619
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	4 cut(s)	243, 326, 478, 600
Sau3AI	GATC	4 cut(s)	75, 90, 381, 627
Sau96I	GGNCC	2 cut(s)	569, 570
ScaI	AGTACT	1 cut(s)	222
ScrFI	CCNGG	3 cut(s)	311, 482, 604
SduI	GDGCHC	3 cut(s)	162, 420, 573
SetI	ASST	8 cut(s)	162, 190, 201, 233, 252, 327, 373, 500
SfaNI	GCATC	3 cut(s)	76, 441, 451
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
Sse9I	AATT	2 cut(s)	143, 389
SsiI	CCGC	3 cut(s)	176, 235, 600
SspMI	CTAG	3 cut(s)	179, 189, 251
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	309, 480, 602
TaaI	ACNGT	3 cut(s)	352, 434, 468
TasI	AATT	2 cut(s)	143, 389
TatI	WGTACW	1 cut(s)	220
TauI	GCSGC	1 cut(s)	602
TfiI	GAWTC	3 cut(s)	61, 111, 260
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	2 cut(s)	103, 121
TseI	GCWGC	3 cut(s)	242, 325, 477
TspDTI	ATGAA	3 cut(s)	5, 141, 524
TspRI	CASTG	2 cut(s)	103, 121
Van91I	CCANNNNNTGG	1 cut(s)	405
XapI	RAATTY	1 cut(s)	143
XspI	CTAG	3 cut(s)	179, 189, 251
ZrmI	AGTACT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.