Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Forward (+)

30239669 .. 30241007

Gene Structure 1339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033654

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGGTTTGTATTAAAAGGGCGTTTTACTGCTGCCTGGGAACTTTACAAAGCTCAAGAGGATGTTGTAGCTGCATGCAATGAGTATGATATCAAAGTTACCCTATTTCATGGGAGAGGAGGAAGTATTGGTCGTGGAGGGGGCCCTACATATCTTGCCATTCAGTCCCAGCCGCCTGGCTCTGTGATGCTGTGCTGCTTGCAATGTTGCGTCCACCACACCCTGCTTGAGAACAAAAGTGGCGTAACCTCATGGAGGAGATCTCAAAGATCAGTTGTCAGAATTACAGGTGTGGTCTACGAAAATCCAGAATTTCTTACTTGTAGGGGACTACCCCATGTTGAGCTTGGCTTCCTCAATATAGGAAGCCACCCCTCAAGAAGAAAGAGCTCTACTGGAATTGGACGTCTTCGGCAATTCCATGGGTGTTTGCGTAGACTCAAACCAGATTTGTTCTTCCAGCTTGGCTTGGAGTTGAACCAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

163

Amino Acids

18.03

Weight (kDa)

9.53

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	7 - 62	1.5e-24	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	409
AccI	GTMKAC	2 cut(s)	297, 436
AciI	CCGC	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	406
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	1 cut(s)	478
AjnI	CCWGG	3 cut(s)	35, 175, 480
AluBI	AGCT	5 cut(s)	53, 71, 346, 390, 463
AluI	AGCT	5 cut(s)	53, 71, 346, 390, 463
Alw21I	GWGCWC	1 cut(s)	392
AoxI	GGCC	1 cut(s)	142
ApaI	GGGCCC	1 cut(s)	146
ApeKI	GCWGC	3 cut(s)	32, 71, 195
ApoI	RAATTY	1 cut(s)	311
AspS9I	GGNCC	2 cut(s)	142, 143
BaeGI	GKGCMC	1 cut(s)	146
BanII	GRGCYC	2 cut(s)	146, 392
BbsI	GAAGAC	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	3 cut(s)	19, 58, 182
BciT130I	CCWGG	3 cut(s)	37, 177, 482
BglII	AGATCT	1 cut(s)	260
BisI	GCNGC	4 cut(s)	33, 72, 173, 196
BlsI	GCNGC	4 cut(s)	34, 73, 174, 197
Bme1390I	CCNGG	3 cut(s)	37, 177, 482
BmgT120I	GGNCC	2 cut(s)	142, 143
BmiI	GGNNCC	2 cut(s)	143, 144
BmrFI	CCNGG	3 cut(s)	37, 177, 482
BmsI	GCATC	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	401
BplI	GAGNNNNNCTC	2 cut(s)	247, 279
BpuEI	CTTGAG	3 cut(s)	39, 248, 361
BsaHI	GRCGYC	1 cut(s)	406
BsaJI	CCNNGG	2 cut(s)	36, 421
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	400
Bse3DI	GCAATG	2 cut(s)	85, 209
BseBI	CCWGG	3 cut(s)	37, 177, 482
BseDI	CCNNGG	2 cut(s)	36, 421
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMI	GCAATG	2 cut(s)	85, 209
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	2 cut(s)	132, 271
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	3 cut(s)	19, 58, 182
BseYI	CCCAGC	1 cut(s)	168
BshFI	GGCC	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	392
BslFI	GGGAC	2 cut(s)	151, 342
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmFI	GGGAC	2 cut(s)	151, 342
BsnI	GGCC	1 cut(s)	144
Bsp120I	GGGCCC	1 cut(s)	142
Bsp1286I	GDGCHC	2 cut(s)	146, 392
Bsp143I	GATC	2 cut(s)	260, 269
Bsp19I	CCATGG	1 cut(s)	421
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	143, 144
BsrDI	GCAATG	2 cut(s)	85, 209
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	2 cut(s)	36, 421
BssMI	GATC	2 cut(s)	260, 269
BssNI	GRCGYC	1 cut(s)	406
BssT1I	CCWWGG	1 cut(s)	421
Bst2UI	CCWGG	3 cut(s)	37, 177, 482
BstACI	GRCGYC	1 cut(s)	406
BstC8I	GCNNGC	2 cut(s)	76, 200
BstDSI	CCRYGG	1 cut(s)	421
BstENI	CCTNNNNNAGG	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	2 cut(s)	263, 272
BstMBI	GATC	2 cut(s)	260, 269
BstNI	CCWGG	3 cut(s)	37, 177, 482
BstNSI	RCATGY	1 cut(s)	78
BstSCI	CCNGG	3 cut(s)	35, 175, 480
BstSLI	GKGCMC	1 cut(s)	146
BstV1I	GCAGC	3 cut(s)	19, 58, 182
BstV2I	GAAGAC	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	260
BstXI	CCANNNNNNTGG	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	67
Cac8I	GCNNGC	2 cut(s)	76, 200
Cfr13I	GGNCC	2 cut(s)	142, 143
CseI	GACGC	1 cut(s)	199
CsiI	ACCWGGT	1 cut(s)	480
CviAII	CATG	5 cut(s)	75, 110, 252, 338, 422
DpnI	GATC	2 cut(s)	262, 271
DpnII	GATC	2 cut(s)	260, 269
Ecl136II	GAGCTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	421
Eco24I	GRGCYC	2 cut(s)	146, 392
Eco32I	GATATC	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	390
EcoICRI	GAGCTC	1 cut(s)	390
EcoNI	CCTNNNNNAGG	1 cut(s)	253
EcoO109I	RGGNCCY	2 cut(s)	142, 143
EcoRII	CCWGG	3 cut(s)	35, 175, 480
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	421
EcoT38I	GRGCYC	2 cut(s)	146, 392
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	5 cut(s)	78, 113, 255, 341, 425
FaiI	YATR	8 cut(s)	76, 87, 111, 151, 253, 339, 362, 423
FaqI	GGGAC	2 cut(s)	151, 342
FatI	CATG	5 cut(s)	74, 109, 251, 337, 421
FblI	GTMKAC	2 cut(s)	297, 436
Fnu4HI	GCNGC	4 cut(s)	33, 72, 173, 196
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	2 cut(s)	146, 392
Fsp4HI	GCNGC	4 cut(s)	33, 72, 173, 196
GluI	GCNGC	4 cut(s)	33, 72, 173, 196
GsaI	CCCAGC	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	144
HgaI	GACGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	406
Hin1II	CATG	5 cut(s)	78, 113, 255, 341, 425
HinfI	GANTC	1 cut(s)	438
Hpy166II	GTNNAC	3 cut(s)	214, 298, 437
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	3 cut(s)	56, 308, 378
Hpy8I	GTNNAC	3 cut(s)	214, 298, 437
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	3 cut(s)	74, 78, 202
HpySE526I	ACGT	1 cut(s)	406
Hsp92I	GRCGYC	1 cut(s)	406
Hsp92II	CATG	5 cut(s)	78, 113, 255, 341, 425
Kzo9I	GATC	2 cut(s)	260, 269
Lsp1109I	GCAGC	3 cut(s)	19, 58, 182
LweI	GCATC	1 cut(s)	177
MabI	ACCWGGT	1 cut(s)	480
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	2 cut(s)	97, 244
MalI	GATC	2 cut(s)	262, 271
MboI	GATC	2 cut(s)	260, 269
MboII	GAAGA	3 cut(s)	393, 401, 448
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	2 cut(s)	146, 392
MluCI	AATT	4 cut(s)	282, 311, 399, 416
MlyI	GAGTC	1 cut(s)	432
MnlI	CCTC	8 cut(s)	52, 110, 113, 131, 249, 259, 365, 385
MseI	TTAA	1 cut(s)	14
MspR9I	CCNGG	3 cut(s)	37, 177, 482
MvaI	CCWGG	3 cut(s)	37, 177, 482
NcoI	CCATGG	1 cut(s)	421
NdeII	GATC	2 cut(s)	260, 269
NlaIII	CATG	5 cut(s)	78, 113, 255, 341, 425
NlaIV	GGNNCC	2 cut(s)	143, 144
NspI	RCATGY	1 cut(s)	78
PaeI	GCATGC	1 cut(s)	78
PkrI	GCNGC	4 cut(s)	34, 73, 174, 197
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	392
Psp6I	CCWGG	3 cut(s)	35, 175, 480
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	3 cut(s)	35, 175, 480
PspN4I	GGNNCC	2 cut(s)	143, 144
PspOMI	GGGCCC	1 cut(s)	142
PspPI	GGNCC	2 cut(s)	142, 143
PsuI	RGATCY	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	4 cut(s)	33, 72, 173, 196
Sau3AI	GATC	2 cut(s)	260, 269
Sau96I	GGNCC	2 cut(s)	142, 143
SchI	GAGTC	1 cut(s)	432
ScrFI	CCNGG	3 cut(s)	37, 177, 482
SduI	GDGCHC	2 cut(s)	146, 392
SetI	ASST	9 cut(s)	55, 73, 251, 292, 348, 392, 409, 465, 486
SexAI	ACCWGGT	1 cut(s)	480
SfaNI	GCATC	1 cut(s)	177
SmlI	CTYRAG	3 cut(s)	54, 227, 376
SmoI	CTYRAG	3 cut(s)	54, 227, 376
SphI	GCATGC	1 cut(s)	78
Sse9I	AATT	4 cut(s)	282, 311, 399, 416
SsiI	CCGC	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	392
StyD4I	CCNGG	3 cut(s)	35, 175, 480
StyI	CCWWGG	1 cut(s)	421
TaiI	ACGT	1 cut(s)	409
TasI	AATT	4 cut(s)	282, 311, 399, 416
TauI	GCSGC	1 cut(s)	175
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TseI	GCWGC	3 cut(s)	32, 71, 195
TspDTI	ATGAA	1 cut(s)	98
XagI	CCTNNNNNAGG	1 cut(s)	253
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	1 cut(s)	78
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344
XmiI	GTMKAC	2 cut(s)	297, 436
ZraI	GACGTC	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.