Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Forward (+)

48231106 .. 48233110

Gene Structure 2005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58104

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTATTCTATGATCAATGGTACTCATGGTTTCTCAGTTCTTTTAAACTTGCCTCTTCATGCAGTATGCAATATTGCATTGGGGCAGGAATCTGGTAGACATGCTGAAACACTTGATGCAATTACCAAATATTTGGATATGGGCACATACAGTGAGTGGGATGAAGAAAAGAAACTGGAATTTCTAACAAGAGAGCTCAAAGGAAAAAGGACCGCTAGTCCCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

75

Amino Acids

8.44

Weight (kDa)

5.84

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	25 - 71	8.4e-10	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	97
AciI	CCGC	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	179
AfaI	GTAC	1 cut(s)	22
AhdI	GACNNNNNGTC	1 cut(s)	216
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
Alw21I	GWGCWC	1 cut(s)	198
ApoI	RAATTY	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	210
BaeGI	GKGCMC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	198
BclI	TGATCA	1 cut(s)	12
BfaI	CTAG	2 cut(s)	216, 226
Bme18I	GGWCC	1 cut(s)	210
BmeRI	GACNNNNNGTC	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	210
BmsI	GCATC	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	180
BseSI	GKGCMC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	204
Bsp1286I	GDGCHC	2 cut(s)	146, 198
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	104
BstSLI	GKGCMC	1 cut(s)	146
BstXI	CCANNNNNNTGG	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	3 cut(s)	26, 59, 101
CviJI	RGCY	1 cut(s)	196
CviKI_1	RGCY	1 cut(s)	196
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
DraI	TTTAAA	1 cut(s)	45
DriI	GACNNNNNGTC	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	60
Eam1105I	GACNNNNNGTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	60
Ecl136II	GAGCTC	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	198
FaeI	CATG	3 cut(s)	29, 62, 104
FaiI	YATR	7 cut(s)	11, 27, 60, 67, 102, 140, 148
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	3 cut(s)	25, 58, 100
FbaI	TGATCA	1 cut(s)	12
FblI	GTMKAC	1 cut(s)	97
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	198
FspBI	CTAG	2 cut(s)	216, 226
Hin1II	CATG	3 cut(s)	29, 62, 104
HinfI	GANTC	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	98
Hpy8I	GTNNAC	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	4 cut(s)	62, 69, 77, 119
HpyF3I	CTNAG	1 cut(s)	34
Hsp92II	CATG	3 cut(s)	29, 62, 104
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	3 cut(s)	71, 78, 161
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	2 cut(s)	216, 226
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	2 cut(s)	47, 176
MhlI	GDGCHC	2 cut(s)	146, 198
MluCI	AATT	2 cut(s)	120, 179
MnlI	CCTC	1 cut(s)	63
MseI	TTAA	1 cut(s)	44
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	3 cut(s)	29, 62, 104
NspI	RCATGY	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	210
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SacI	GAGCTC	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	1 cut(s)	210
SduI	GDGCHC	2 cut(s)	146, 198
SetI	ASST	1 cut(s)	198
SfaNI	GCATC	1 cut(s)	106
SgeI	CNNG	9 cut(s)	38, 61, 71, 98, 105, 113, 125, 188, 201
SinI	GGWCC	1 cut(s)	210
Sse9I	AATT	2 cut(s)	120, 179
SsiI	CCGC	1 cut(s)	213
SspI	AATATT	2 cut(s)	73, 131
SspMI	CTAG	2 cut(s)	216, 226
SstI	GAGCTC	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	152
TasI	AATT	2 cut(s)	120, 179
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	47, 177
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	210
XapI	RAATTY	1 cut(s)	179
XceI	RCATGY	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	97
XspI	CTAG	2 cut(s)	216, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.