Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Forward (+)

31173578 .. 31174579

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G022500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCGTATTCCAGCTCTCCATTACAAAGCTAAGGAACTTGATTTTCCAACTGCAAAGTTTCTATACATGGATTGTTTGTTAAAATTGATAAAATACTACCATCTACATTGTAATTGGCAGGCAAGTGACATCCTTGCTGTGGAGCTTTTGCAAAAAGATGCACGACTTGCCGTTAGTGGACAGATAGGAAAGCCATGTCCTGGTGGAACGCTGCGTGTGGTTCCTTTGTTTGAAACTGTAAAGGACTTGAGAGGAGCTGGCTCAATGATCAGGAAATTATTGTCCATTGATTGGTACAGGGAGCACATCATCAAGAACCATAATGGGCATCAAGAGGGCGTTTTACTGCTGCCTGGGAACTTTACAAAGCTCAAGAGGATGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

128

Amino Acids

14.68

Weight (kDa)

9.57

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	29 - 112	9.4e-16	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	200, 291
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	3 cut(s)	139, 200, 291
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	2 cut(s)	199, 352
AluBI	AGCT	5 cut(s)	14, 29, 145, 257, 370
AluI	AGCT	5 cut(s)	14, 29, 145, 257, 370
Alw21I	GWGCWC	1 cut(s)	306
ApeKI	GCWGC	2 cut(s)	211, 349
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	198, 336
BccI	CCATC	1 cut(s)	108
BceAI	ACGGC	1 cut(s)	155
BciT130I	CCWGG	2 cut(s)	201, 354
BclI	TGATCA	1 cut(s)	267
BisI	GCNGC	2 cut(s)	212, 350
BlsI	GCNGC	2 cut(s)	213, 351
Bme1390I	CCNGG	2 cut(s)	201, 354
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	2 cut(s)	201, 354
BmsI	GCATC	2 cut(s)	148, 337
Bpu10I	CCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	2 cut(s)	268, 356
BsaJI	CCNNGG	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 200, 291
BseBI	CCWGG	2 cut(s)	201, 354
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	2 cut(s)	129, 384
BseLI	CCNNNNNNNGG	3 cut(s)	139, 200, 291
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	198, 336
BsiHKAI	GWGCWC	1 cut(s)	306
BslI	CCNNNNNNNGG	3 cut(s)	139, 200, 291
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	201, 354
Bst4CI	ACNGT	1 cut(s)	238
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	120, 259
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	129, 384
BstKTI	GATC	1 cut(s)	270
BstMBI	GATC	1 cut(s)	267
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	2 cut(s)	201, 354
BstSCI	CCNGG	2 cut(s)	199, 352
BstV1I	GCAGC	2 cut(s)	198, 336
BtsCI	GGATG	2 cut(s)	129, 384
Cac8I	GCNNGC	2 cut(s)	120, 259
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	2 cut(s)	67, 195
CviJI	RGCY	7 cut(s)	14, 29, 145, 193, 257, 261, 370
CviKI_1	RGCY	7 cut(s)	14, 29, 145, 193, 257, 261, 370
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
EcoRII	CCWGG	2 cut(s)	199, 352
FaeI	CATG	2 cut(s)	70, 198
FaiI	YATR	4 cut(s)	64, 68, 196, 321
FatI	CATG	2 cut(s)	66, 194
FbaI	TGATCA	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	212, 350
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	212, 350
GluI	GCNGC	2 cut(s)	212, 350
Hin1II	CATG	2 cut(s)	70, 198
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188III	TCNNGA	4 cut(s)	271, 313, 332, 373
Hpy8I	GTNNAC	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	53, 151, 161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	70, 198
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	3 cut(s)	142, 254, 301
LpnPI	CCDG	9 cut(s)	24, 104, 186, 213, 243, 256, 283, 339, 366
Lsp1109I	GCAGC	2 cut(s)	198, 336
LweI	GCATC	2 cut(s)	148, 337
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	3 cut(s)	83, 112, 275
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	3 cut(s)	245, 328, 369
MseI	TTAA	1 cut(s)	80
MspR9I	CCNGG	2 cut(s)	201, 354
MvaI	CCWGG	2 cut(s)	201, 354
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	2 cut(s)	70, 198
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	125
PflMI	CCANNNNNTGG	2 cut(s)	200, 291
PkrI	GCNGC	2 cut(s)	213, 351
Psp6I	CCWGG	2 cut(s)	199, 352
PspGI	CCWGG	2 cut(s)	199, 352
PspN4I	GGNNCC	1 cut(s)	222
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	2 cut(s)	212, 350
Sau3AI	GATC	1 cut(s)	267
ScrFI	CCNGG	2 cut(s)	201, 354
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	5 cut(s)	16, 31, 147, 259, 372
SfaNI	GCATC	2 cut(s)	148, 337
SmlI	CTYRAG	2 cut(s)	247, 371
SmoI	CTYRAG	2 cut(s)	247, 371
Sse9I	AATT	3 cut(s)	83, 112, 275
StyD4I	CCNGG	2 cut(s)	199, 352
TaaI	ACNGT	1 cut(s)	238
TasI	AATT	3 cut(s)	83, 112, 275
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	2 cut(s)	211, 349
Tsp45I	GTSAC	1 cut(s)	125
Van91I	CCANNNNNTGG	2 cut(s)	200, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.