Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014259.1

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Reverse (-)

60811 .. 61071

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014259.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atggaggagatctcaaagatcagttgtcagaattactggagcgtagtctacgaaaatccagaattccttacttactttcaggaggctacacgccaggctgagcttggcttcctcaacataggaagccgcccctcaagaagaaagagctctattggaattggacatcttcgggcaattacatgggtgtttgcatggactcgaaccagatttgttcttccagcttggattggagttgaaccagctttaaggtggggtttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

86

Amino Acids

10.03

Weight (kDa)

9.51

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	62
AgsI	TTSAA	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	4 cut(s)	103, 147, 221, 242
AluI	AGCT	4 cut(s)	103, 147, 221, 242
Alw21I	GWGCWC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	95
BglII	AGATCT	1 cut(s)	9
BisI	GCNGC	1 cut(s)	127
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	95
BmrFI	CCNGG	1 cut(s)	95
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	58
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	9, 18
Bsp1720I	GCTNAGC	1 cut(s)	99
BspACI	CCGC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	41
BssMI	GATC	2 cut(s)	9, 18
Bst2UI	CCWGG	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	99
BstKTI	GATC	2 cut(s)	12, 21
BstMBI	GATC	2 cut(s)	9, 18
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
CviAII	CATG	2 cut(s)	180, 192
CviJI	RGCY	8 cut(s)	86, 98, 103, 108, 126, 147, 221, 242
CviKI_1	RGCY	8 cut(s)	86, 98, 103, 108, 126, 147, 221, 242
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	2 cut(s)	11, 20
DpnII	GATC	2 cut(s)	9, 18
Ecl136II	GAGCTC	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	147
EcoRI	GAATTC	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	149
FaeI	CATG	2 cut(s)	183, 195
FaiI	YATR	3 cut(s)	119, 181, 193
FatI	CATG	2 cut(s)	179, 191
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	127
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	127
GluI	GCNGC	1 cut(s)	127
GsuI	CTGGAG	1 cut(s)	58
Hin1II	CATG	2 cut(s)	183, 195
HinfI	GANTC	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	3 cut(s)	59, 80, 135
Hpy8I	GTNNAC	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	191
HpyF3I	CTNAG	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	183, 195
Kzo9I	GATC	2 cut(s)	9, 18
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	8 cut(s)	22, 65, 72, 80, 107, 217, 231, 252
MalI	GATC	2 cut(s)	11, 20
MboI	GATC	2 cut(s)	9, 18
MboII	GAAGA	3 cut(s)	150, 158, 206
MflI	RGATCY	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	4 cut(s)	31, 62, 156, 174
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	3 cut(s)	76, 122, 142
MseI	TTAA	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
NdeII	GATC	2 cut(s)	9, 18
NlaIII	CATG	2 cut(s)	183, 195
PkrI	GCNGC	1 cut(s)	128
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp124BI	GAGCTC	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	9
SacI	GAGCTC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	2 cut(s)	9, 18
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	5 cut(s)	105, 149, 223, 244, 251
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	4 cut(s)	31, 62, 156, 174
SsiI	CCGC	1 cut(s)	127
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	93
TaqI	TCGA	1 cut(s)	199
TasI	AATT	4 cut(s)	31, 62, 156, 174
TauI	GCSGC	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
XapI	RAATTY	1 cut(s)	62
XcmI	CCANNNNNNNNNTGG	2 cut(s)	101, 246
XmiI	GTMKAC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.