Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000999

Physical Location & Seq

Genomic Coordinates Reverse (-)

65767441 .. 65769318

Gene Structure 1878 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60322

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGCACATACAGTGAGTGGGATGAAGAAAAGAAACTGGAATCTCTAACAAGAGAGCTCAAAGGAAAAAGACCACTAGTCCCACCTACACCTAGCATGGAGGGTACTCTACGATTAACTGAGCAAGGAGAAATGGTACAGTCAGAATTTGGGCTGCCACAGATTGCACTCAGACAGCTAGAGGTGTATTGCTTGCAACGTTGCGTCCACCACACCCTCCTCGAGAACAAAAGTAGTGTAACCTCATGGAGCAGATCTCAAAGATCAGTTGTCAGAATTACTGGAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

96

Amino Acids

10.97

Weight (kDa)

7.81

Isoelectric Point (pI)

59.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	29 - 85	2.8e-09	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68750
fragaria_vesca	FvH4_3g20961 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350 FvH4_4g28350
malus_domestica	MD13G1049200.v1.1 MD16G1050300.v1.1
prunus_persica	Prupe.1G302700_v2.0.a1 Prupe.1G302700_v2.0.a1
pyrus_communis	pycom16g04410
rosa_chinensis	RchiOBHm_Chr1g0330331 RchiOBHm_Chr1g0355581 RchiOBHm_Chr1g0379911 RchiOBHm_Chr4g0407141 RchiOBHm_Chr4g0436201 RchiOBHm_Chr5g0035501 RchiOBHm_Chr5g0035601 RchiOBHm_Chr5g0035681 RchiOBHm_Chr5g0035861 RchiOBHm_Chr5g0063691 RchiOBHm_Chr6g0312331
rosa_laevigata	RLG00000006529 RLG00000033624 RLG00000033642 RLG00000033654
rosa_multiflora	Rmu_sc0000084.1_g000022 Rmu_sc0006173.1_g000008 Rmu_sc0007205.1_g000021 Rmu_sc0014259.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021870 Rroxscaffold_1G00044830 Rroxscaffold_1G00044890 Rroxscaffold_1G00044970 Rroxscaffold_3G00231670 Rroxscaffold_5G00377400 Rroxscaffold_7G00185100
rosa_rugosa	Rorug03G0294000 Rorug04G0292500 Rorug04G0292600 Rorug04G0292600
rosa_samantha	Rh4AG346800 Rh4BG355700 Rh4CG370400 Rh4DG349400 Rh5AG245000 Rh5BG244800 Rh5CG276300 Rh5CG276800 Rh5DG253900 Rh5DG464900 Rh6BG126500
rosa_wichuraiana	Rw1G008440 Rw4G030310 Rw5G022500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	146
AfaI	GTAC	2 cut(s)	106, 138
AhdI	GACNNNNNGTC	1 cut(s)	77
AhlI	ACTAGT	1 cut(s)	76
AluBI	AGCT	2 cut(s)	58, 178
AluI	AGCT	2 cut(s)	58, 178
Alw21I	GWGCWC	1 cut(s)	60
Ama87I	CYCGRG	1 cut(s)	221
ApeKI	GCWGC	1 cut(s)	154
ApoI	RAATTY	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	141
BcuI	ACTAGT	1 cut(s)	76
BfaI	CTAG	3 cut(s)	77, 93, 179
BglII	AGATCT	1 cut(s)	254
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
BmeRI	GACNNNNNGTC	1 cut(s)	77
BmeT110I	CYCGRG	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	241, 273
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bse1I	ACTGG	2 cut(s)	42, 286
BseGI	GGATG	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	111, 184
BseNI	ACTGG	2 cut(s)	42, 286
BseRI	GAGGAG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	8, 60
Bsp143I	GATC	2 cut(s)	254, 263
BspCNI	CTCAG	2 cut(s)	112, 183
BsrI	ACTGG	2 cut(s)	42, 286
BssMI	GATC	2 cut(s)	254, 263
Bst4CI	ACNGT	2 cut(s)	14, 141
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	120, 170
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	257, 266
BstMBI	GATC	2 cut(s)	254, 263
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	194
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	2 cut(s)	105, 137
CviAII	CATG	2 cut(s)	97, 246
CviJI	RGCY	3 cut(s)	58, 154, 178
CviKI_1	RGCY	3 cut(s)	58, 154, 178
CviQI	GTAC	2 cut(s)	105, 137
DdeI	CTNAG	2 cut(s)	120, 170
DpnI	GATC	2 cut(s)	256, 265
DpnII	GATC	2 cut(s)	254, 263
DriI	GACNNNNNGTC	1 cut(s)	77
Eam1105I	GACNNNNNGTC	1 cut(s)	77
Ecl136II	GAGCTC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	60
FaeI	CATG	2 cut(s)	100, 249
FaiI	YATR	3 cut(s)	10, 98, 247
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	96, 245
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	3 cut(s)	77, 93, 179
GluI	GCNGC	1 cut(s)	155
HgaI	GACGC	1 cut(s)	193
Hin1II	CATG	2 cut(s)	100, 249
HinfI	GANTC	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	145, 173, 275
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	14, 141
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	167, 196
HpyF3I	CTNAG	2 cut(s)	120, 170
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	2 cut(s)	100, 249
Kzo9I	GATC	2 cut(s)	254, 263
LmnI	GCTCC	2 cut(s)	249, 284
LpnPI	CCDG	2 cut(s)	23, 267
Lsp1109I	GCAGC	1 cut(s)	141
MaeI	CTAG	3 cut(s)	77, 93, 179
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	2 cut(s)	256, 265
MboI	GATC	2 cut(s)	254, 263
MboII	GAAGA	1 cut(s)	38
MflI	RGATCY	1 cut(s)	254
MhlI	GDGCHC	2 cut(s)	8, 60
MluCI	AATT	2 cut(s)	146, 276
MnlI	CCTC	5 cut(s)	94, 175, 227, 230, 253
MseI	TTAA	1 cut(s)	116
NdeII	GATC	2 cut(s)	254, 263
NlaIII	CATG	2 cut(s)	100, 249
PaeR7I	CTCGAG	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	60
Psp1406I	AACGTT	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	254
RsaI	GTAC	2 cut(s)	106, 138
RsaNI	GTAC	2 cut(s)	105, 137
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	2 cut(s)	254, 263
SduI	GDGCHC	2 cut(s)	8, 60
SetI	ASST	7 cut(s)	60, 88, 94, 180, 186, 202, 245
Sfr274I	CTCGAG	1 cut(s)	221
SlaI	CTCGAG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SpeI	ACTAGT	1 cut(s)	76
Sse9I	AATT	2 cut(s)	146, 276
SspMI	CTAG	3 cut(s)	77, 93, 179
SstI	GAGCTC	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	14, 141
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	222
TasI	AATT	2 cut(s)	146, 276
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	1 cut(s)	146
XhoI	CTCGAG	1 cut(s)	221
XspI	CTAG	3 cut(s)	77, 93, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.